Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001413.1 Kokia drynarioides strain JFW-HI SEQ_112908, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1106
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.37


Found at i:966 original size:16 final size:17

Alignment explanation


    Indices: 936--970  Score: 54
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        926 TTCGACTGTG

                             
        936 AAGAAGAAGAAGAAGAA
          1 AAGAAGAAGAAGAAGAA

                      *      
        953 AAGAA-AAGATGAAGAA
          1 AAGAAGAAGAAGAAGAA

              
        969 AA
          1 AA

        971 ATGTCATCCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  16   12  0.71
  17    5  0.29

ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03


Consensus pattern (17 bp):   
AAGAAGAAGAAGAAGAA
Done.