genome.fa.s14131.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014131.1 Kokia drynarioides strain JFW-HI SEQ_129164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  295312

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--62	24	2.6	23	82	7	70	35	0	1	62	1.05
81--121	18	2.4	16	80	11	55	39	2	0	58	1.11
6563--6672	54	2.0	55	91	1	177	48	15	19	17	1.82
8043--8180	23	6.0	22	77	10	118	44	19	21	14	1.86
8089--8211	23	5.3	23	83	5	140	44	21	22	11	1.84
8039--8188	69	2.1	70	86	9	209	46	19	21	13	1.84
11691--11793	36	2.9	36	86	0	125	34	24	13	27	1.93
11888--11994	23	4.7	23	82	0	133	48	12	3	35	1.58
11888--11996	46	2.4	46	85	3	148	48	12	3	34	1.59
15090--15449	79	4.6	78	86	4	481	22	18	26	33	1.97
17540--17593	20	2.7	20	85	2	63	64	1	5	27	1.26
17532--17653	9	12.7	9	70	16	59	61	3	3	31	1.28
17556--17597	20	2.1	20	90	0	66	61	0	4	33	1.17
21046--21099	20	2.7	20	80	5	56	37	5	9	48	1.59
24192--24254	31	2.0	32	87	3	92	33	6	9	50	1.60
24958--24986	13	2.2	13	100	0	58	0	6	0	93	0.36
24971--25253	99	2.9	96	90	6	444	29	19	11	39	1.87
35400--35595	98	2.0	98	97	0	374	36	12	19	31	1.89
40933--41158	30	7.8	29	77	12	164	40	21	4	33	1.74
40959--41158	30	6.9	29	79	10	196	40	21	5	33	1.75
40969--41158	57	3.3	58	86	6	235	41	20	4	33	1.73
40948--41161	87	2.5	86	85	6	270	41	20	5	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41200--41300	27	3.7	26	75	17	96	24	1	8	64	1.33
41217--41326	31	3.5	31	80	12	145	22	0	8	68	1.22
44574--44618	19	2.3	20	78	17	51	37	2	4	55	1.32
45426--45472	22	2.2	21	96	3	85	21	6	0	72	1.07
45668--45720	21	2.5	21	84	6	63	35	24	9	30	1.87
53754--53806	8	6.4	8	77	14	54	83	0	15	1	0.74
53760--53811	27	1.9	27	88	0	77	80	0	15	3	0.85
54696--54917	49	4.5	48	74	4	176	34	17	29	19	1.94
54696--54926	98	2.4	99	82	2	270	34	16	28	20	1.95
55206--55457	80	3.2	79	79	7	287	31	21	17	29	1.96
55206--55457	40	6.3	40	78	9	246	31	21	17	29	1.96
55363--55542	100	1.8	100	86	4	265	34	20	15	30	1.93
55510--55797	39	7.3	38	73	8	245	32	27	15	24	1.95
55464--55797	79	4.2	79	85	3	431	33	26	14	25	1.94
55464--55797	40	8.4	40	74	5	277	33	26	14	25	1.94
55291--55621	179	1.8	179	83	2	441	33	20	16	29	1.94
55207--55679	258	1.8	259	86	1	680	32	22	15	28	1.95
57153--57209	30	1.9	30	85	7	80	19	17	8	54	1.68
57285--57348	28	2.2	29	88	5	94	42	20	1	35	1.62
57330--57480	30	5.0	30	82	4	171	38	25	4	31	1.76
57301--57480	60	3.0	61	82	9	196	38	25	4	31	1.75
57508--57632	27	4.4	28	77	14	123	23	1	8	66	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57523--57632	33	3.6	33	74	20	130	24	0	9	65	1.27
57530--57627	31	3.3	31	75	16	125	23	1	9	66	1.27
57523--57636	58	2.0	58	98	0	219	24	0	9	64	1.29
57548--57638	16	6.0	16	66	22	54	24	1	9	64	1.30
57530--57638	31	3.7	30	75	17	120	23	0	9	66	1.27
61009--61065	18	3.1	18	79	2	60	29	35	15	19	1.93
61098--61138	21	2.0	21	95	0	73	21	17	24	36	1.94
68471--68501	15	2.1	15	100	0	62	25	6	6	61	1.45
77227--77365	50	2.7	51	84	6	167	48	6	4	40	1.48
79806--79844	19	2.0	20	95	5	71	46	20	7	25	1.77
81256--81453	107	1.8	108	84	4	274	38	19	11	30	1.87
81754--81804	14	3.6	14	76	7	50	74	0	5	19	1.02
82226--82285	22	2.8	21	80	10	59	16	11	6	65	1.46
82522--82551	3	10.0	3	100	0	60	33	0	0	66	0.92
94885--95095	113	1.8	113	87	5	316	40	18	12	28	1.87
96193--96222	3	10.0	3	100	0	60	33	0	0	66	0.92
99942--100018	25	3.1	25	100	0	154	53	23	3	19	1.62
100728--100896	48	3.5	48	79	2	144	28	12	26	33	1.92
102466--102509	18	2.4	19	81	11	56	54	0	0	45	0.99
124353--124388	18	2.0	18	94	0	63	30	16	16	36	1.91
136203--136238	18	1.9	19	94	5	65	50	16	0	33	1.46
141359--141455	51	1.9	51	91	0	158	47	12	9	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143886--143941	22	2.6	23	81	13	66	42	3	7	46	1.48
143889--143942	23	2.3	24	81	15	69	40	3	7	48	1.49
144977--145072	41	2.3	41	92	0	156	36	26	6	31	1.81
149405--149518	41	2.8	41	93	0	201	38	26	4	30	1.76
159951--159979	14	2.0	15	93	6	51	6	24	0	68	1.13
160455--160568	41	2.8	41	93	0	201	38	26	4	30	1.76
171001--171029	14	2.0	15	93	6	51	6	24	0	68	1.13
171670--171762	22	4.2	22	71	13	73	6	4	21	67	1.31
171781--171851	24	3.0	24	73	8	72	9	4	15	70	1.30
171734--171851	48	2.5	46	86	4	148	8	5	17	68	1.34
179081--179721	246	2.6	249	84	3	850	33	12	12	41	1.80
179991--180024	3	11.3	3	100	0	68	32	0	32	35	1.58
190555--190642	24	3.7	24	82	0	113	29	25	20	25	1.99
193147--193186	14	2.9	14	88	0	62	62	7	22	7	1.47
193794--193843	21	2.4	21	86	0	64	26	12	24	38	1.90
198131--198185	28	2.0	28	88	0	83	25	29	14	30	1.95
198159--198329	36	4.8	36	94	0	297	23	26	15	34	1.95
204495--204519	13	1.9	13	100	0	50	40	8	16	36	1.77
206471--206504	17	2.0	17	94	0	59	26	29	14	29	1.95
207612--207855	124	2.0	124	89	1	373	36	21	19	22	1.95
229564--229617	23	2.3	23	90	0	81	35	11	20	33	1.88
230980--231031	21	2.4	22	81	12	63	40	11	0	48	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233405--233478	37	2.0	37	81	0	85	27	12	28	32	1.92
233528--233556	14	2.1	14	93	6	51	55	6	13	24	1.63
233707--233759	27	2.0	27	84	0	70	30	11	26	32	1.91
236176--236214	18	2.2	18	85	0	51	51	2	12	33	1.54
240155--240208	20	2.5	22	79	11	67	25	3	9	61	1.43
250391--250838	62	7.2	62	92	1	727	31	13	21	33	1.92
259454--259541	30	2.9	30	91	0	149	60	0	26	13	1.34
259485--259536	12	4.8	12	71	26	53	61	0	26	11	1.30
259477--259526	16	3.2	16	75	11	59	60	0	26	14	1.34
259546--259592	18	2.6	18	89	0	67	34	17	4	44	1.68
265834--265902	27	2.6	27	79	6	77	65	2	2	28	1.22
265865--265902	19	2.0	19	89	0	58	68	0	0	31	0.90
265831--265919	10	9.7	9	74	11	74	62	3	2	31	1.23
267145--267273	60	2.2	59	80	1	141	41	5	13	39	1.67
268682--268712	2	15.0	2	93	6	53	48	0	3	48	1.17
270617--270669	27	2.0	27	81	7	63	11	43	7	37	1.69
272570--272628	29	2.0	29	83	9	75	47	15	6	30	1.71
277674--277824	62	2.4	62	85	0	212	33	23	12	29	1.92
277796--278136	52	6.6	52	89	3	501	36	23	12	26	1.91
283397--283425	3	9.7	3	100	0	58	68	0	0	31	0.89
286347--286396	24	2.1	24	96	0	91	26	12	6	56	1.58
286355--286409	24	2.3	24	84	6	67	30	14	7	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288871--288950	40	2.0	40	100	0	160	27	7	27	37	1.84

Tables:   1

The End!