Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014132.1 Kokia drynarioides strain JFW-HI SEQ_129165, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 300408
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Warning! 10 characters in sequence are not A, C, G, or T
Found at i:10742 original size:24 final size:24
Alignment explanation
Indices: 10710--10792 Score: 123
Period size: 24 Copynumber: 3.5 Consensus size: 24
10700 TTAAACTCTA
10710 TCTGGGCTCGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
10734 TCTGGGCTCGTAAGAGCTAATCAT
1 TCTGGGCTCGTAAGAGCTAATCAT
* *
10758 TTTGGGCTCAG-AAGAGCTAATTAT
1 TCTGGGCTC-GTAAGAGCTAATCAT
*
10782 TCTAGGCTCGT
1 TCTGGGCTCGT
10793 GTTGGCTAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
23 1 0.02
24 51 0.96
25 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (24 bp):
TCTGGGCTCGTAAGAGCTAATCAT
Found at i:12504 original size:13 final size:13
Alignment explanation
Indices: 12486--12514 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
12476 GGATGAACTC
12486 CTTGCATTGAATT
1 CTTGCATTGAATT
12499 CTTGCATTGAATT
1 CTTGCATTGAATT
12512 CTT
1 CTT
12515 CCAGAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (13 bp):
CTTGCATTGAATT
Found at i:20492 original size:18 final size:18
Alignment explanation
Indices: 20471--20528 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 18
20461 CATAATATTA
*
20471 ATACAATTCCAAATACAG
1 ATACAATTACAAATACAG
*
20489 ATACAATTACAAATGCAG
1 ATACAATTACAAATACAG
* *
20507 ATATAA-TACAGATACAG
1 ATACAATTACAAATACAG
*
20524 TTACA
1 ATACA
20529 GATGCAGACA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
17 12 0.36
18 21 0.64
ACGTcount: A:0.50, C:0.17, G:0.09, T:0.24
Consensus pattern (18 bp):
ATACAATTACAAATACAG
Found at i:20515 original size:29 final size:29
Alignment explanation
Indices: 20482--20573 Score: 105
Period size: 29 Copynumber: 3.2 Consensus size: 29
20472 TACAATTCCA
*
20482 AATACAGATACAATTACAAATGCAGATAT
1 AATACAGATACAGTTACAAATGCAGATAT
* *
20511 AATACAGATACAGTTACAGATGCAGACAT
1 AATACAGATACAGTTACAAATGCAGATAT
* * * *
20540 GATACAAATGTC-GTAACAAATGCAGATAT
1 AATACAGAT-ACAGTTACAAATGCAGATAT
20569 AATAC
1 AATAC
20574 CCCCATCCAC
Statistics
Matches: 52, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
29 51 0.98
30 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.14, T:0.23
Consensus pattern (29 bp):
AATACAGATACAGTTACAAATGCAGATAT
Found at i:23500 original size:29 final size:30
Alignment explanation
Indices: 23438--23503 Score: 89
Period size: 29 Copynumber: 2.2 Consensus size: 30
23428 AATTTACAAG
* * *
23438 AATTGAATCAAATCAAAATTTCATGTATAA
1 AATTGCATAAAATCAAAATTTCATATATAA
*
23468 AATTGCATAAAATCAAAA-TTCATATATAC
1 AATTGCATAAAATCAAAATTTCATATATAA
23497 AATTGCA
1 AATTGCA
23504 CAACAAACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 16 0.50
30 16 0.50
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (30 bp):
AATTGCATAAAATCAAAATTTCATATATAA
Found at i:26720 original size:10 final size:8
Alignment explanation
Indices: 26694--26731 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
26684 ATATTAAAAA
26694 ATATTTTT
1 ATATTTTT
26702 ATATTTTT
1 ATATTTTT
26710 ATACTTTTT
1 ATA-TTTTT
26719 -TAATTTTT
1 AT-ATTTTT
26727 ATATT
1 ATATT
26732 AAAAAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
8 20 0.74
9 7 0.26
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (8 bp):
ATATTTTT
Found at i:32540 original size:26 final size:25
Alignment explanation
Indices: 32511--32565 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 25
32501 TTTAATTTTT
32511 ATTAAATTGATAATAACTA-ATATATA
1 ATTAAATTGATAATAA-TATATAT-TA
* * *
32537 ATTATATTTATTATAATATATATTA
1 ATTAAATTGATAATAATATATATTA
32562 ATTA
1 ATTA
32566 TTATCAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (25 bp):
ATTAAATTGATAATAATATATATTA
Found at i:32553 original size:22 final size:19
Alignment explanation
Indices: 32528--32569 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
32518 TGATAATAAC
32528 TAATATATAATTATATTTATTA
1 TAATATAT-ATTA-A-TTATTA
32550 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
32569 T
1 T
32570 CAAAATTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 1 0.05
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:32560 original size:16 final size:15
Alignment explanation
Indices: 32528--32566 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
32518 TGATAATAAC
32528 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
32544 TTATTATAATATATAT
1 TAATTATAAT-TATAT
32560 TAATTAT
1 TAATTAT
32567 TATCAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:33316 original size:27 final size:26
Alignment explanation
Indices: 33286--33337 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
33276 TCGTGCCACG
33286 TTCCA-AATTGAAGAAGCACAAAACAAA
1 TTCCACAA-TGAAGAAGC-CAAAACAAA
33313 TTCCACAATGAAGAAGCCAAAACAA
1 TTCCACAATGAAGAAGCCAAAACAA
33338 GATATGACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 8 0.33
27 14 0.58
28 2 0.08
ACGTcount: A:0.54, C:0.21, G:0.12, T:0.13
Consensus pattern (26 bp):
TTCCACAATGAAGAAGCCAAAACAAA
Found at i:36842 original size:3 final size:3
Alignment explanation
Indices: 36834--36873 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
36824 GCTTCTTTGG
*
36834 TCT TCT TCT TCT TCT TCT TCT TCT TCT ACT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
36874 GTGGTGCTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:48448 original size:15 final size:14
Alignment explanation
Indices: 48423--48475 Score: 61
Period size: 15 Copynumber: 3.6 Consensus size: 14
48413 ACAGTATGAT
*
48423 GAAAAAAAAAAAAA
1 GAAAAAGAAAAAAA
48437 GAAAAACGAAAAAAA
1 GAAAAA-GAAAAAAA
*
48452 TGAAAAAGAAAAAGA
1 -GAAAAAGAAAAAAA
48467 GAAAGAAGA
1 GAAA-AAGA
48476 GAGCATATGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
14 10 0.29
15 18 0.53
16 6 0.18
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (14 bp):
GAAAAAGAAAAAAA
Found at i:48450 original size:16 final size:15
Alignment explanation
Indices: 48423--48464 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
48413 ACAGTATGAT
48423 GAAAAA-AAAAAAAA
1 GAAAAAGAAAAAAAA
*
48437 GAAAAACGAAAAAAAT
1 GAAAAA-GAAAAAAAA
48453 GAAAAAGAAAAA
1 GAAAAAGAAAAA
48465 GAGAAAGAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 6 0.24
15 6 0.24
16 13 0.52
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (15 bp):
GAAAAAGAAAAAAAA
Found at i:48457 original size:22 final size:21
Alignment explanation
Indices: 48423--48464 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
48413 ACAGTATGAT
48423 GAAAAAAAAAAAAAGAAAAAC
1 GAAAAAAAAAAAAAGAAAAAC
*
48444 GAAAAAAATGAAAAAGAAAAA
1 GAAAAAAA-AAAAAAGAAAAA
48465 GAGAAAGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (21 bp):
GAAAAAAAAAAAAAGAAAAAC
Found at i:57095 original size:20 final size:20
Alignment explanation
Indices: 57070--57120 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
57060 ATCATCTGTT
* * *
57070 TATGAATATGATGTTTATGG
1 TATGAATATGATATGTATGA
57090 TATGAATATGATATGTATGA
1 TATGAATATGATATGTATGA
*
57110 TATGCATATGA
1 TATGAATATGA
57121 AATGCATGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.35, C:0.02, G:0.22, T:0.41
Consensus pattern (20 bp):
TATGAATATGATATGTATGA
Found at i:64408 original size:61 final size:61
Alignment explanation
Indices: 64333--64455 Score: 246
Period size: 61 Copynumber: 2.0 Consensus size: 61
64323 TGTGAAATTC
64333 GTATGAAGTAAAATGTGAATTTTTTTTACCATGAGTACTTATGTGATTGCATGATAAACAT
1 GTATGAAGTAAAATGTGAATTTTTTTTACCATGAGTACTTATGTGATTGCATGATAAACAT
64394 GTATGAAGTAAAATGTGAATTTTTTTTACCATGAGTACTTATGTGATTGCATGATAAACAT
1 GTATGAAGTAAAATGTGAATTTTTTTTACCATGAGTACTTATGTGATTGCATGATAAACAT
64455 G
1 G
64456 CCTATATGAT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 62 1.00
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (61 bp):
GTATGAAGTAAAATGTGAATTTTTTTTACCATGAGTACTTATGTGATTGCATGATAAACAT
Found at i:67500 original size:31 final size:31
Alignment explanation
Indices: 67463--67524 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
67453 TCAACTTTCC
67463 AATAATCTACAAGATAGAGGAAACGATTATG
1 AATAATCTACAAGATAGAGGAAACGATTATG
67494 AATAATCTACAAGATAGAGGAAACGATTATG
1 AATAATCTACAAGATAGAGGAAACGATTATG
67525 TAAGCATTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.48, C:0.10, G:0.19, T:0.23
Consensus pattern (31 bp):
AATAATCTACAAGATAGAGGAAACGATTATG
Found at i:69085 original size:40 final size:41
Alignment explanation
Indices: 69041--69120 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
69031 GGCTCTTATG
*
69041 TGGAGGTA-TTTTGTCTCATTCAAGAAAAAGTGCTTCCACA
1 TGGAGGCATTTTTGTCTCATTCAAGAAAAAGTGCTTCCACA
* *
69081 TGGAGGCATTTTTGTCTCATTCAAGGAAAAGTGTTTCCAC
1 TGGAGGCATTTTTGTCTCATTCAAGAAAAAGTGCTTCCAC
69121 GTGAAAGCAC
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
40 7 0.19
41 29 0.81
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (41 bp):
TGGAGGCATTTTTGTCTCATTCAAGAAAAAGTGCTTCCACA
Found at i:74050 original size:12 final size:12
Alignment explanation
Indices: 74028--74075 Score: 55
Period size: 12 Copynumber: 3.9 Consensus size: 12
74018 ATTCTTCCTC
74028 TTTCTTGTCTTCT
1 TTTCTT-TCTTCT
74041 TTTCTTTCTTCT
1 TTTCTTTCTTCT
74053 TATT-TTTCTTC-
1 T-TTCTTTCTTCT
74064 TTTCTCTTCTTC
1 TTTCT-TTCTTC
74076 CTTCTCCTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
10 2 0.06
11 2 0.06
12 20 0.62
13 8 0.25
ACGTcount: A:0.02, C:0.25, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTCTTTCTTCT
Found at i:91334 original size:21 final size:21
Alignment explanation
Indices: 91304--91356 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
91294 GGAGTTTTTG
* *
91304 GTATCAGTAGATA-CATGACTT
1 GTATCGGTAGAAATCAT-ACTT
91325 GTATCGGTAGAAATCATACTT
1 GTATCGGTAGAAATCATACTT
91346 GTATCGGTAGA
1 GTATCGGTAGA
91357 GCTAGCACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (21 bp):
GTATCGGTAGAAATCATACTT
Found at i:98173 original size:21 final size:20
Alignment explanation
Indices: 98149--98200 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 20
98139 AGAGTTTTTG
98149 GTATCGGTAG-ATGCATGACTT
1 GTATCGGTAGAAT-CAT-ACTT
98170 GTATCGGTAGAAATCATACTT
1 GTATCGGTAG-AATCATACTT
98191 GTATCGGTAG
1 GTATCGGTAG
98201 GGCTAGCACA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 24 0.83
22 3 0.10
23 2 0.07
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (20 bp):
GTATCGGTAGAATCATACTT
Found at i:98979 original size:56 final size:56
Alignment explanation
Indices: 98908--99059 Score: 173
Period size: 56 Copynumber: 2.7 Consensus size: 56
98898 CTTCAGGGGA
* * * * * *
98908 CACACGGGCTTGTGTCAAACCATGTGTGTATAC-AGTTTTAGG-GCGCATGGGCTAGC
1 CACACGAGCATGTGTCAGACCATGTGTGTATACTA-TTTT-GGTGCACACGAGCTAGC
* * * *
98964 CACACGAGCGTGTGTCAGACCGTGTGCGTATACTATTTTGGTGCACACGAGCTGGC
1 CACACGAGCATGTGTCAGACCATGTGTGTATACTATTTTGGTGCACACGAGCTAGC
*
99020 CACACGAGCATGTGTCAGACCATGTGTGCATACTATTTTG
1 CACACGAGCATGTGTCAGACCATGTGTGTATACTATTTTG
99060 TGATTCAAGG
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
55 2 0.02
56 78 0.96
57 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (56 bp):
CACACGAGCATGTGTCAGACCATGTGTGTATACTATTTTGGTGCACACGAGCTAGC
Found at i:99538 original size:40 final size:40
Alignment explanation
Indices: 99494--99602 Score: 128
Period size: 40 Copynumber: 2.7 Consensus size: 40
99484 GAGAATATTT
* *
99494 ACTAAATTGGTAGTGACACTGTAAACACTGCAGGATTATA
1 ACTAAATTGGTAGTGACACTGTAAACACTGCAAGATTACA
* * **
99534 ACTAAACTGATAGTGACACTGTAAATGCTGCAAGATTACA
1 ACTAAATTGGTAGTGACACTGTAAACACTGCAAGATTACA
* * * *
99574 ATTGAATTGGCAGTGACATTGTAAACACT
1 ACTAAATTGGTAGTGACACTGTAAACACT
99603 CCAATGTGTC
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (40 bp):
ACTAAATTGGTAGTGACACTGTAAACACTGCAAGATTACA
Found at i:101279 original size:16 final size:16
Alignment explanation
Indices: 101258--101288 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
101248 TTGTGGATCC
101258 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
101274 CATTTTATCTTTATT
1 CATTTTACCTTTATT
101289 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:104817 original size:37 final size:37
Alignment explanation
Indices: 104724--104821 Score: 117
Period size: 38 Copynumber: 2.6 Consensus size: 37
104714 ATTTCCAGAA
*
104724 TGCACCCAAGATTGTCGTTGCATAAATATTCTTCAAAT
1 TGCACCC-AGAATGTCGTTGCATAAATATTCTTCAAAT
* * * *
104762 TGCATCCAAAACTATCGTTGCATAAGTATTCTTC-AAT
1 TGCACCCAGAA-TGTCGTTGCATAAATATTCTTCAAAT
104799 TGCACCCAGGAATGTCGTTGCAT
1 TGCACCCA-GAATGTCGTTGCAT
104822 GAACATGTCC
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
37 22 0.44
38 28 0.56
ACGTcount: A:0.30, C:0.22, G:0.15, T:0.33
Consensus pattern (37 bp):
TGCACCCAGAATGTCGTTGCATAAATATTCTTCAAAT
Found at i:105666 original size:16 final size:16
Alignment explanation
Indices: 105645--105675 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
105635 TTGTGGATCC
105645 CATTTTACCTTTATTA
1 CATTTTACCTTTATTA
*
105661 CATTTTATCTTTATT
1 CATTTTACCTTTATT
105676 TTCACATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.16, G:0.00, T:0.61
Consensus pattern (16 bp):
CATTTTACCTTTATTA
Found at i:107961 original size:216 final size:215
Alignment explanation
Indices: 107519--109001 Score: 1351
Period size: 216 Copynumber: 6.9 Consensus size: 215
107509 AAAATTACTC
* * * * *
107519 TATTTGAATTAAAAACTTACTTACGTGAGAATTGTTTCTCT-TCTGGTTCTTTGTCAAACTTTCA
1 TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCCGAACTTTCG
* *
107583 AACTTGTCAATA-TTTTATGAGTTCTTTTAT-AATTTTGTTTCATTAAAGTATTCAAGGCGATCC
65 AACTTGTCAA-ACTTTTATGAGTTCTTTTATAAATTTTG-TTCCTTAAAGTATTCAAGACGATCC
* ** * * * *
107646 ATTCCTTCAAGCAATTTACCAAACATTCAATACTCGGGAAATCGCATCATTTGCACCAAATAGTT
128 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGTT
**
107711 TGTCATTTTGTAAACAGCATTTGG
193 TGTCATTTTGTAAA-AAAATTTGG
** * ** * *
107735 TATTTGAATTAAAAACTTGCTCACACGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAATTTTTGA
1 TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGA
* * * * * *
107800 ACTTTTCAAACTTTTACT-AGTTTTTTTTATAAATTTGGTTGCTTAAAGTATTAAAGCCGATCCA
66 ACTTGTCAAACTTTTA-TGAG-TTCTTTTATAAATTTTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
107864 TGCCTTCGAGTAATTTTTCGAACATTTCATGCTCGAGAAATTGCATCATTTACTCCAAATAGTTT
129 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGTTT
* **
107929 TTCAAATTGTAAAAAAAATTT-G
194 GTCATTTTGT-AAAAAAATTTGG
* * * *
107951 TATTTGAATTAAAAAGTTATTTACGTGAGACTTGTTTTTCTATTGGTTCTTGGCCGAACTTTCGA
1 TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGA
* * * * * *
108016 ACTTCTCATACTTTTATGAGTTCTTTTATAATTTTTGTTCCTAAAAGTATTCAAGATGATTCATT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAAATTTTGTTCCTTAAAGTATTCAAGACGATCCATT
* * * * * *
108081 TCTTCGAGCAA-TTTTCCAACATTCCATGCTCGGGAAATTGCATTATTTGGTCTAAATAGTTTGT
131 CCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGTTTGT
* * *
108145 CATTTTGTAAACAACTTT-T
196 CATTTTGTAAAAAAATTTGG
* * * * * * * *
108164 TGACTTTCAGTTAAAAACTTATTTAAGTAAGAGTTGTTTCTCTCGTGGTTCTTGCCCAAACTTTC
1 T-A-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * * *
108229 AAACTTGTCAAACTTTTATTAGTTCTTTTATAACTTTTGTTCCTTAAAGTATTCAAGATGATTCA
64 GAACTTGTCAAACTTTTATGAGTTCTTTTATAAATTTTGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
108294 TTCCTTCGAGCAAATTTTCGAACATTCCATGCTTGGGGAATCACATCTTTTGGTCCAAATAGTTT
129 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGTTT
* *
108359 GTCATTTTGTAAACAACTTATGG
194 GTCATTTTGTAAAAAAATT-TGG
* * * * *
108382 TCTTTGAATTACAAACTTATTTACGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCGAACTTCCGT
1 TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGA
** ** * *
108447 ACTTGTCAAACTTTTATGAGTT-TTTTATATCTTAGGTTCCTTAATGTATTCAAGACGATCCAAA
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAAATTTTGTTCCTTAAAGTATTCAAGACGATCC-AT
* * *** * ** * * * * * *
108511 TCTTTTGAGCAATTTTAAAAAAATTCCATATTCGAGAAATCGCATTATCTGATCCAAAAAGGTTG
130 TCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGTTTG
* * * *
108576 TTATTTTGTAAACATATTTTTG
195 TCATTTTGTAAA-AAAATTTGG
* * * * * * *
108598 TCTTTGAATTAAAACCTTATTTACGTGGGAATTGTTTCTCGCTTGGGTCTTGGTCGAAC-TTCCA
1 TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGA
* * * * ** * * *
108662 AATTAGTCAAACTTTGACGAGTTCTTTTATAACTTCAGTTCCTTATAGTATTCAAGATGATACAT
66 ACTT-GTCAAACTTTTATGAGTTCTTTTATAAATTTTGTTCCTTAAAGTATTCAAGACGATCCAT
* * * * *
108727 TCCTAT-GACCAATTTTTCAAACATTCCATGCTCGGGAAATCGCATAATTTGGTCAAAATAGTTT
130 TCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGTTT
** *
108791 GTCAATTTTGTAAACAATTTTTTG
194 GTC-ATTTTGTAAA-AAAATTTGG
* * * * * * *
108815 TACTTGAATTAAAAACTTATTTAAGTGAGAGTTCTTTCACTGTTGATTCTTGGCCGAACTTTCGA
1 TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGA
* * * *
108880 GCTTGTCAAACTTTTATGAGCTCTTTTAT-AATTTTGTTTCCTTAAAGT-TT--TGAAGA-CCAT
66 ACTTGTCAAACTTTTATGAGTTCTTTTATAAATTTTG-TTCCTTAAAGTATTCAAGACGATCCAT
* * * * * * *
108940 TCCTTGGAGTAA-TTTTCAAAACATTTCATGCTCGAGAAATCACATCATTTGGTCCAAATAGT
130 TCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGT
109002 GGTGGAACCC
Statistics
Matches: 1028, Mismatches: 217, Indels: 47
0.80 0.17 0.04
Matches are distributed among these distances:
212 6 0.01
213 59 0.06
214 56 0.05
215 205 0.20
216 457 0.44
217 229 0.22
218 16 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.41
Consensus pattern (215 bp):
TATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGA
ACTTGTCAAACTTTTATGAGTTCTTTTATAAATTTTGTTCCTTAAAGTATTCAAGACGATCCATT
CCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGCTCCAAATAGTTTGT
CATTTTGTAAAAAAATTTGG
Found at i:109713 original size:43 final size:43
Alignment explanation
Indices: 109647--110423 Score: 678
Period size: 43 Copynumber: 18.4 Consensus size: 43
109637 TTTTTTAGCT
* *
109647 CGATGCTCTCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* *
109690 CGATGCTCCCGCACATTCGAGGCACCAAGGTGCCGATGGTGTT
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * * *
109733 CGA-GATTGCCGCACATCTGAGGTACCAAGGTGCCGATGGTGTC
1 CGATG-CTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * * *
109776 CGATGCTCCTGCACATCCGAGGCACCAAGGTACCGACNNNNNNNNNNCCGACGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGA------------TGG---TGTC
* * *
109834 CGAGGCTCCCGTACATCCGAGGCACCAAGGTACCGACT-GTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGA-TGGTGTC
* **
109877 CGATGCTCCCACA-ATCCGAGGCACCAAGGTGCCGGCGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
109919 CGATGCTCCCGCACATCCGAGGCACCAAGGTG-C--------C
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* *
109953 CGAGGCTCCTGCACATCCGAGGCACC-A-------A-GGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * * *
109987 CGAGGCTCCTGCACATCTGAGGCACCAAGGTGCCGACGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * * * * *
110030 CGAGGCTCCCGTACATCCGTGGCACCAAGGTGTCGACGATGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * * * ** *
110073 CAAGGCTCCTGAACATCTAAGGCACCAAGGTGCCGACGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
110116 CGATGCTCCCGCACATCCGAGGCACC-A-------A-GGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * * *
110150 CGAGGCTCCCACACATCCGGGGCACCAAGGTGTCGATGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
110193 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * *
110236 CGATGCTCCCCCACATCCGAGGCACCAAGGTGCCGGTGGTGTT
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * *
110279 CGAGGCTCCCGCACATCTGAGGCACCAAGGTGCCGGTGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* * * * ** *
110322 TGAGGCTCGCACACATTTGAGGCACCAAGGTGCCGGTGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
* *
110365 CAATGCTCCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTC
1 CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
*
110408 CGATGCTCTCGCACAT
1 CGATGCTCCCGCACAT
110424 GTCTGAAATA
Statistics
Matches: 609, Mismatches: 82, Indels: 86
0.78 0.11 0.11
Matches are distributed among these distances:
33 1 0.00
34 80 0.13
35 3 0.00
42 42 0.07
43 443 0.73
44 1 0.00
47 1 0.00
55 1 0.00
58 37 0.06
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.17
Consensus pattern (43 bp):
CGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTC
Found at i:109967 original size:34 final size:34
Alignment explanation
Indices: 109913--110020 Score: 171
Period size: 34 Copynumber: 3.2 Consensus size: 34
109903 AGGTGCCGGC
* * *
109913 GGTGTCCGATGCTCCCGCACATCCGAGGCACCAA
1 GGTGCCCGAGGCTCCTGCACATCCGAGGCACCAA
109947 GGTGCCCGAGGCTCCTGCACATCCGAGGCACCAA
1 GGTGCCCGAGGCTCCTGCACATCCGAGGCACCAA
* *
109981 GGTGTCCGAGGCTCCTGCACATCTGAGGCACCAA
1 GGTGCCCGAGGCTCCTGCACATCCGAGGCACCAA
110015 GGTGCC
1 GGTGCC
110021 GACGGTGTCC
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 68 1.00
ACGTcount: A:0.19, C:0.36, G:0.30, T:0.15
Consensus pattern (34 bp):
GGTGCCCGAGGCTCCTGCACATCCGAGGCACCAA
Found at i:110158 original size:34 final size:34
Alignment explanation
Indices: 110110--110183 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
110100 AGGTGCCGAC
* *
110110 GGTGTCCGATGCTCCCGCACATCCGAGGCACCAA
1 GGTGTCCGAGGCTCCCACACATCCGAGGCACCAA
*
110144 GGTGTCCGAGGCTCCCACACATCCGGGGCACCAA
1 GGTGTCCGAGGCTCCCACACATCCGAGGCACCAA
110178 GGTGTC
1 GGTGTC
110184 GATGGTGTCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.19, C:0.36, G:0.30, T:0.15
Consensus pattern (34 bp):
GGTGTCCGAGGCTCCCACACATCCGAGGCACCAA
Found at i:110168 original size:120 final size:119
Alignment explanation
Indices: 110024--110400 Score: 425
Period size: 120 Copynumber: 3.1 Consensus size: 119
110014 AGGTGCCGAC
* * * * *
110024 GGTGTCCGAGGCTCCCGTACATCCGTGGCACCAAGGTGTCGACGATGTCCAAGGCTCCTGAACAT
1 GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGTCGATGGTGTCCGAGGCTCC-GAACAT
* *
110089 CTAAGGCACCAAGGTGCCGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAA
65 CTGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCGAGGCACCAA
* * * *
110144 GGTGTCCGAGGCTCCCACACATCCGGGGCACCAAGGTGTCGATGGTGTCCGATGCTCCCGCACAT
1 GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGTCGATGGTGTCCGAGGCT-CCGAACAT
* *
110209 CCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCCCACATCCGAGGCACCAA
65 CTGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCGAGGCACCAA
* * * * *
110264 GGTGCCGGTGGTGTTCGAGGCTCCCGCACATCTGAGGCACCAAGGTGCCGGTGGTGTCTGAGGCT
1 ---------GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGTCGATGGTGTCCGAGGCT
* * * *
110329 -CGCACACATTTGAGGCACCAAGGTGCCGGTGGTGTCCAATGCTCCCGCACATCCAAGGCACCAA
57 CCG-A-ACATCTGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCGAGGCACCAA
110393 GGTG-CCGA
1 GGTGTCCGA
110401 TGGTGTCCGA
Statistics
Matches: 217, Mismatches: 28, Indels: 25
0.80 0.10 0.09
Matches are distributed among these distances:
119 3 0.01
120 109 0.50
121 2 0.01
127 2 0.01
129 101 0.47
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.17
Consensus pattern (119 bp):
GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGTCGATGGTGTCCGAGGCTCCGAACATC
TGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGCACATCCGAGGCACCAA
Found at i:110194 original size:163 final size:161
Alignment explanation
Indices: 109828--110423 Score: 654
Period size: 163 Copynumber: 3.7 Consensus size: 161
109818 NNNNNCCGAC
* *
109828 GGTGTCCGAGGCTCCCGTACATCCGAGGCACCAAGGTACCGACT-GTGTCCGATGCTCCC-ACAA
1 GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGA-TGGTGTCCGATGCTCCCGAC-A
*
109891 TCCGAGGCACCAAGGTGCCGGCGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGT---GC-
64 TCCGAGGCACCAAGGTGCCGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGCG
*
109952 ----CCGAGGCTCCTGCACATCCGAGGCACCAA
129 GTGTCCGAGGCTCCCGCACATCCGAGGCACCAA
* * * *
109981 GGTGTCCGAGGCTCCTGCACATCTGAGGCACCAAGGTGCCGACGGTGTCCGAGGCTCCCGTACAT
1 GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCG-ACAT
* * * * * * * **
110046 CCGTGGCACCAAGGTGTCGACGATGTCCAAGGCTCCTGAACATCTAAGGCACCAAGGTGCCGACG
65 CCGAGGCACCAAGGTGCCGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCG-CG
*
110111 GTGTCCGATGCTCCCGCACATCCGAGGCACCAA
129 GTGTCCGAGGCTCCCGCACATCCGAGGCACCAA
* * *
110144 GGTGTCCGAGGCTCCCACACATCCGGGGCACCAAGGTGTCGATGGTGTCCGATGCTCCCGCACAT
1 GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCG-ACAT
* * *
110209 CCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCCCACATCCGAGGCACCAAGGTGCCGGTG
65 CCGAGGCACCAAGGTGCCGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGCC-GCG
* *
110274 GTGTTCGAGGCTCCCGCACATCTGAGGCACCAA
129 GTGTCCGAGGCTCCCGCACATCCGAGGCACCAA
* * * ** * *
110307 GGTGCCGGTGGTGTCTGAGGCTCGCACACATTTGAGGCACCAAGGTGCCGGTGGTGTCCAATGCT
1 ---------GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCT
* * *
110372 CCCGCACATCCAAGGCACCAAGGTGCCGATGGTGTCCGATGCTCTCGCACAT
57 CCCG-ACATCCGAGGCACCAAGGTGCCGACGGTGTCCGATGCTCCCGCACAT
110424 GTCTGAAATA
Statistics
Matches: 369, Mismatches: 52, Indels: 25
0.83 0.12 0.06
Matches are distributed among these distances:
153 52 0.14
154 50 0.14
155 2 0.01
157 1 0.00
158 1 0.00
163 165 0.45
164 1 0.00
172 97 0.26
ACGTcount: A:0.19, C:0.34, G:0.30, T:0.17
Consensus pattern (161 bp):
GGTGTCCGAGGCTCCCGCACATCCGAGGCACCAAGGTGCCGATGGTGTCCGATGCTCCCGACATC
CGAGGCACCAAGGTGCCGACGGTGTCCGATGCTCCCGCACATCCGAGGCACCAAGGTGCCGCGGT
GTCCGAGGCTCCCGCACATCCGAGGCACCAA
Found at i:111238 original size:86 final size:87
Alignment explanation
Indices: 111061--111251 Score: 246
Period size: 86 Copynumber: 2.2 Consensus size: 87
111051 TTTTTTGGGC
* *
111061 CGATGGTGTCCCG-TGCTCCTGCACATGCAAGACACCAAGGTGCCGATGCTTCCCCCGATGGTCC
1 CGATGGTGT-CCGATGCTCCTGCACATGCAAGACACCAAGGTGCCGATACTT-CCCCGATCGTCC
* * *
111125 CGCACCACCATCGGCCTTAGTTTT
64 CGCACCACCATCGACCTTACTTGT
* * *
111149 CGATGGTGTCCGATGCT-CTCGCACAT-CGAAGGCACCATGGTGTCGATACTT-CCCGATCGTCC
1 CGATGGTGTCCGATGCTCCT-GCACATGC-AAGACACCAAGGTGCCGATACTTCCCCGATCGTCC
111211 CGCACCACCATCGACCTTACTTGT
64 CGCACCACCATCGACCTTACTTGT
111235 CGATGGTGTCCGATGCT
1 CGATGGTGTCCGATGCT
111252 TCCCGATGGT
Statistics
Matches: 92, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
86 48 0.52
87 6 0.07
88 38 0.41
ACGTcount: A:0.17, C:0.35, G:0.24, T:0.24
Consensus pattern (87 bp):
CGATGGTGTCCGATGCTCCTGCACATGCAAGACACCAAGGTGCCGATACTTCCCCGATCGTCCCG
CACCACCATCGACCTTACTTGT
Found at i:111297 original size:53 final size:53
Alignment explanation
Indices: 111188--111300 Score: 129
Period size: 53 Copynumber: 2.2 Consensus size: 53
111178 AGGCACCATG
* ** *
111188 GTGT-CGATACTTCCCGATCGTCCCGCACCACCATCGACCTTACTTGTCGATG
1 GTGTCCGATACTTCCCGATCGTCCCGCACCACCATCGACCTAACTTACCGATA
* * * * * *
111240 GTGTCCGATGCTTCCCGATGGTCCCGTACCACCATTGGCCTAAGTTACCGATA
1 GTGTCCGATACTTCCCGATCGTCCCGCACCACCATCGACCTAACTTACCGATA
111293 GTGTCCGA
1 GTGTCCGA
111301 AGAAAACACT
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
52 4 0.08
53 46 0.92
ACGTcount: A:0.18, C:0.34, G:0.22, T:0.27
Consensus pattern (53 bp):
GTGTCCGATACTTCCCGATCGTCCCGCACCACCATCGACCTAACTTACCGATA
Found at i:112230 original size:29 final size:27
Alignment explanation
Indices: 112147--112483 Score: 133
Period size: 29 Copynumber: 11.6 Consensus size: 27
112137 CCCTAGAGGT
*
112147 CCCTAAACTATCCAAAAAT-CATATTTTAA
1 CCCTAAACT-TCCAAAATTCCAT-TTTT-A
*
112176 CCCTTGAACTTTTCCAAAATTCCATTTTTGA
1 CCC-TAAAC--TTCCAAAATTCCATTTTT-A
*
112207 CCCT-AACATTCCAAAAATTTCATTTTTA
1 CCCTAAAC-TTCC-AAAATTCCATTTTTA
* * *
112235 CCCCTGAACTTTCTAAAATTACATTTTTA
1 -CCCTAAAC-TTCCAAAATTCCATTTTTA
112264 CCCTAAACTTTCCAAAATTCCATTTTTAA
1 CCCTAAAC-TTCCAAAATTCCATTTTT-A
* * *
112293 CCCTAAATTTTCTAAAAATTACA-TTTTA
1 CCCTAAA-CTTC-CAAAATTCCATTTTTA
* * *
112321 CCCCTAAATTTTCCCAAAATTCTATTTTAA
1 -CCCTAAA-CTT-CCAAAATTCCATTTTTA
* ** * **
112351 CCTTGAATTTTCTGAAAATTATATTTTTA
1 CCCT-AAACTTC-CAAAATTCCATTTTTA
** * *
112380 CCCCGAACTTTACAAAAGTTACATTTTTA
1 CCCTAAAC-TTCCAAAA-TTCCATTTTTA
* * *
112409 TCCTCAAACTTCCAAAATTACTATTTTTC
1 CCCT-AAACTTCCAAAATT-CCATTTTTA
**
112438 CCCCGAA-TATCCAAAAATTCCATTTTTGA
1 CCCTAAACT-TCC-AAAATTCCATTTTT-A
* *
112467 CCTCAAAACTGCCAAAA
1 CC-CTAAACTTCCAAAA
112484 AATACCATTT
Statistics
Matches: 238, Mismatches: 46, Indels: 48
0.72 0.14 0.14
Matches are distributed among these distances:
27 1 0.00
28 50 0.21
29 132 0.55
30 34 0.14
31 17 0.07
32 4 0.02
ACGTcount: A:0.35, C:0.24, G:0.03, T:0.38
Consensus pattern (27 bp):
CCCTAAACTTCCAAAATTCCATTTTTA
Found at i:112232 original size:28 final size:28
Alignment explanation
Indices: 112187--112436 Score: 148
Period size: 29 Copynumber: 8.6 Consensus size: 28
112177 CCTTGAACTT
*
112187 TTCCAAAATTCCATTTTTGACCCT-AACA
1 TTCCAAAATTACATTTTT-ACCCTAAACA
* * *
112215 TTCCAAAAATTTCATTTTTACCCCTGAACT
1 TTCC-AAAATTACATTTTTA-CCCTAAACA
* *
112245 TTCTAAAATTACATTTTTACCCTAAACT
1 TTCCAAAATTACATTTTTACCCTAAACA
* **
112273 TTCCAAAATTCCATTTTTAACCCTAAATT
1 TTCCAAAATTACATTTTT-ACCCTAAACA
* **
112302 TTCTAAAAATTACA-TTTTACCCCTAAATT
1 TTC-CAAAATTACATTTTTA-CCCTAAACA
* * * **
112331 TTCCCAAAATT-CTATTTTAACCTTGAATT
1 TT-CCAAAATTAC-ATTTTTACCCTAAACA
* * ** *
112360 TTCTGAAAATTATATTTTTACCCCGAACT
1 TTC-CAAAATTACATTTTTACCCTAAACA
* *
112389 TTACAAAAGTTACATTTTTATCCTCAAAC-
1 TTCCAAAA-TTACATTTTTACCCT-AAACA
112418 TTCCAAAATTACTATTTTT
1 TTCCAAAATTAC-ATTTTT
112437 CCCCCGAATA
Statistics
Matches: 181, Mismatches: 27, Indels: 27
0.77 0.11 0.11
Matches are distributed among these distances:
28 40 0.22
29 119 0.66
30 22 0.12
ACGTcount: A:0.34, C:0.22, G:0.02, T:0.42
Consensus pattern (28 bp):
TTCCAAAATTACATTTTTACCCTAAACA
Found at i:112311 original size:58 final size:57
Alignment explanation
Indices: 112147--112464 Score: 236
Period size: 58 Copynumber: 5.5 Consensus size: 57
112137 CCCTAGAGGT
* * * * *
112147 CCCTAAACTATCCAAAAAT-CATATTTTAACCCTTGAACTTTTCCAAAATTCCATTTTTGA
1 CCCTAAACTTTCCAAAATTCCAT-TTTTAACCC-T-AAATTTTCTAAAATTACATTTTT-A
* * * * *
112207 CCCT-AACATTCCAAAAATTTCATTTTTACCCCTGAACTTTCTAAAATTACATTTTTA
1 CCCTAAACTTTCC-AAAATTCCATTTTTAACCCTAAATTTTCTAAAATTACATTTTTA
112264 CCCTAAACTTTCCAAAATTCCATTTTTAACCCTAAATTTTCTAAAAATTACA-TTTTA
1 CCCTAAACTTTCCAAAATTCCATTTTTAACCCTAAATTTTCT-AAAATTACATTTTTA
* * * * *
112321 CCCCTAAATTTTCCCAAAATTCTA-TTTTAACCTTGAATTTTCTGAAAATTATATTTTTA
1 -CCCTAAACTTT-CCAAAATTCCATTTTTAACCCTAAATTTTCT-AAAATTACATTTTTA
** * * * * * *
112380 CCCCGAACTTTACAAAAGTTACATTTTT-ATCCTCAAA-CTTCCAAAATTACTATTTTTC
1 CCCTAAACTTTCCAAAA-TTCCATTTTTAACCCT-AAATTTTCTAAAATTAC-ATTTTTA
** *
112438 CCCCGAA-TATCCAAAAATTCCATTTTT
1 CCCTAAACTTTCC-AAAATTCCATTTTT
112465 GACCTCAAAA
Statistics
Matches: 210, Mismatches: 36, Indels: 27
0.77 0.13 0.10
Matches are distributed among these distances:
57 59 0.28
58 103 0.49
59 28 0.13
60 17 0.08
61 3 0.01
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.40
Consensus pattern (57 bp):
CCCTAAACTTTCCAAAATTCCATTTTTAACCCTAAATTTTCTAAAATTACATTTTTA
Found at i:112471 original size:57 final size:58
Alignment explanation
Indices: 112365--112483 Score: 145
Period size: 57 Copynumber: 2.1 Consensus size: 58
112355 GAATTTTCTG
* * *
112365 AAAATTATATTTTTACCCCGAACTTTACAAAAGTTACATTTTTATCCTC-AAACTTCC
1 AAAATTATATTTTTACCCCGAACTATACAAAAATTACATTTTTATCCTCAAAACTGCC
* * *
112422 AAAATTACTATTTTTCCCCCGAA-TATCCAAAAATTCCATTTTTGA-CCTCAAAACTGCC
1 AAAATTA-TATTTTTACCCCGAACTATACAAAAATTACATTTTT-ATCCTCAAAACTGCC
112480 AAAA
1 AAAA
112484 AATACCATTT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
57 27 0.51
58 26 0.49
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.34
Consensus pattern (58 bp):
AAAATTATATTTTTACCCCGAACTATACAAAAATTACATTTTTATCCTCAAAACTGCC
Found at i:114045 original size:216 final size:216
Alignment explanation
Indices: 113658--118344 Score: 4919
Period size: 216 Copynumber: 21.8 Consensus size: 216
113648 CATTGGTTGT
* * ** * * *
113658 TTAAAGTATTAAAGACGATCGATTCCTTCGAGCAATTCTTTAAAACATTCCACGCTCAGAAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTTCGAACATTCCATGCTCGGGAAATC
** ** ** **** * * *
113723 TTATCATTTAATCCAAATAGTTTGTCAAATTGTAAA-AAAAAATTGTATTTGAATTCAAAAGTAA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* * * *
113787 TTTACGTGAGAATTGTTTCTCTCTTGATTCTTGG-TCGAACTTTTGAACTTGTCAGATTTTTACG
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTTTTACG
* *
113851 TGTTCTTTTATAATTTTGGTTCC
194 AGTTCTTTTATAACTTTGGTTCC
** * * * *
113874 TTAAAGTATTCAAGATAATCCATTCTTTCAAGCAATTTTTTGAACATTCCATGCTCGGAAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* *
113939 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAATCAATTTTTTGTATTTGAATTAAAAACTTAT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTAT
* * * * *
114004 TTACGTGAGAATTATTTCACTCTTAGG-TCTTGGCTGAACTTTAGAACTTGTCAAGCTTTTATGA
131 TTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGA
* *
114068 GTTCTTTTAAAACTTCGGTTCC
195 GTTCTTTTATAACTTTGGTTCC
* * * *
114090 TTAAAGTATTCAAGACAATACATTCCTAT-GAGCAGTTTTTCGAACATTCCATTCTCGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * ***
114154 GCATAATTTGGTCCAAATATTTTGTCATTTTGTAAA-AAAAATTTGTATTTGAATTAAAAACTTA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* * * * * *
114218 CTTAAGTGAGAATTCTTTCTCTGTTGGTTCTTGACCGAACTTTCGAACTTGTCAAACTTTTACGA
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
114283 CTTATTTTATAACTTCGGTTGC
195 GTTCTTTTATAACTTTGGTTCC
* * * * ** * * *
114305 TTAAAGTATTCAAGTCAATCAATTCCTTCAAGCAATTTACCAAACATTCAATACTCGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
*** * * *
114370 CATCATTTCCACGAAATAGTTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTAC
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTAT
* * * * * *
114435 TCACATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-TTTCTAAACTTTTCAAACTTTTACTA
131 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTC-GAACTTGTCAAACTTTTACGA
* * *
114499 GTTTTTTTTATAAATTTGGTTGC
195 G-TTCTTTTATAACTTTGGTTCC
* * * * * * *
114522 TTAAAGTATTAAAG-CTACCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTTGAGAAATTG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
** * ** ** * ** *
114586 CATCATTTACTTCCAAATAGTTTTTCAAATTAAAAAGAA--AATTGTATTTGAATTAAAAAGTTA
66 CATCATTT-GGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* * * * * * * *
114649 TTTACATGAGAATTGTTTCTTTATTGGTTCTTGGCCGAACTTTCGAACTTGTTAGATTTTTATGA
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGA
*
114714 GTTCTTTTATAATTTTGGTTCC
195 GTTCTTTTATAACTTTGGTTCC
* * *
114736 TTAAAGTATTCAAGATGATCCATTTCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATTG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * *
114801 CATTATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTG-ACTTTCAATTATAAATTTA
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTA-TTTGAATTAAAAACTTA
* * * * * ** * * * *
114865 TTTAAGTAAGAACTGTGTCTCT-TGTGGTTCTTGCCCAAACTTCCAAACTTGTTAAACTTTTATG
130 TTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
* *
114929 AGTTTTTTTATAACTTTTGTTCC
194 AGTTCTTTTATAACTTTGGTTCC
*
114952 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCAGGG-AATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC-GGGAAATC
* * * * * * * *
115016 ACATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACCTCTGGTCTTTGAATTACAAACTTA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* * * *
115081 TTTACGAGAGAATTGTTTCTCTCTTAGTTCTTGGCTGAACTTCCGAACTTGTCAAACTTTTATGA
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGA
* * * *
115146 GTTCTTTTATATCATAGGCTCC
195 GTTCTTTTATAACTTTGGTTCC
* * * * * * * * *
115168 TTAAAGTATTGAAGACGATCCAATCCTTTGAGCATTTTTTAGAAAATTCCATACTCGAGAAATTG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
** * * * * * * *
115233 CATTGTCTGATCCAAAATGGTTT-TTATTTTGTAAACATA-TATTTTTTCTTTGAATAAAAAACT
66 CATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACA-ACT-TTTTGTATTTGAATTAAAAACT
* * * * * *
115296 TATTTACGTGGGAATTGTTTCTCTCTTGGGTCTTGGCCGAACTTCCGAACTAGTCAAACTTTGAC
128 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTAC
*
115361 GAGTTCTTTTATAACGTCT-GTTCC
193 GAGTTCTTTTATAAC-TTTGGTTCC
* * *
115385 TTAAAGTATTCAAGATGATACATTCCTGT-GAGCAATTTTTCGAACATTCCATGCTTGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * *
115449 GCATAATTTGGTCCAAATAGGTTGTCAATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTT
65 GCATCATTTGGTCCAAATAGTTTGTC-ATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTT
* * * * ** * *
115514 ATTTAAGTGAGAATTCTTTCACTGTTTATTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATG
129 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
**
115579 AGTTCTTTTATAA-TTTCATTTCC
194 AGTTCTTTTATAACTTT-GGTTCC
* * * * *
115602 TTAAAGTATTCAAGACGGTCCATTCCTTGGAGTAA-TTTTCAAAACATTCCATGCTCGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
* * * * *
115666 ACATCATTTGGTCCAATTAGTGTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* *
115731 TTTACGTAAGAATTGTTTCTCTCTT-GTTCTTGGCTGAACTTTCGAACTTTTCAAA-TTTTACGA
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGA
*
115794 GTTCTTTTATAA-TTTCCGTTCC
195 GTTCTTTTATAACTTT-GGTTCC
* * * * * * * *
115816 GTAAAGTATTTAAGACGATCCATTCCATCTAACAATTTTTTGAACATTCCATGGTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * * *
115881 CATCATTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAATAACTTCT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTAT
* * * * * * * *
115946 TTCCGAGAGAATTGTTTGTCTCAT-GTTCTTGGCTGAACTTTCGAGCTTTTCAAAATTTTACAAG
131 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGAG
* *
116010 TTCTTTTACAA-TTTCGATTCC
196 TTCTTTTATAACTTT-GGTTCC
* * ** * * * *
116031 TTAAAGTATCCAAGATGATCCATTCCAACTAGCAATTTCTCGAACTTTCCATGGTCGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * *
116096 CATCATTTGGTCCAAATAGTTTGTCATTTTG-AAAGCAACTTTTGGTATTTGAATTTAAAACTTC
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA-CAACTTTTTGTATTTGAATTAAAAACTTA
* * * * * ** * * * *
116160 TTTCCGGGAGGATTGTTTCCCTCGTGGTTCTT-GCCCAAATTCCGAAATTGTC-AACTTTTATGA
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGA
*
116223 GTTCTTTTATAACTTTGGCTCC
195 GTTCTTTTATAACTTTGGTTCC
* * * * * * * *
116245 ATGAAGTATTCAAAACGATCTATTCCTCCAAGCAATTTTTTGAACATTCCATGCTCGGGGAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * * * * *
116310 CATCTTTTGGTCCAAGTAGTTTGTCATTTTGTAAACAAATTTTGGTCTTAGAATTACAAACTTAT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTAT
* * * * * * * *
116375 TTACATGATAATGGTTTCTCTCTTGGTTTTTGGATGAACTTCCTAACTTGTCAAACTTTTATGAG
131 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGAG
116440 TTCTTTTATAACTTTGGTTCC
196 TTCTTTTATAACTTTGGTTCC
* * * * ** * * * *
116461 TTAAAGTATTTAAGATGATCCAATCCATATAGCAATTGTTCGGAA-ATTTCATGCTCGAGAAATT
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
* * * * *
116525 GCATTATTTGATCCAAATAGTTTGTCATTTTGTAAACAAATTTTTTTCATTCG-ATTAAAAACTT
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGT-ATTTGAATTAAAAACTT
* * * * *
116589 ATTTACATGAGAATTGTTTCTCTCTTGGGTCTTGGCCGAACTTCCGAACTTGTCAAACTTTATTC
129 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTT-TAC
* ***
116654 -AATTCTTTTATAACTTCAATTCC
193 GAGTTCTTTTATAACTTTGGTTCC
* * * *
116677 TTAAAGTATTCAAGATGATACATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* *
116742 CATCATTTGGTCCAAATAGTTTGTCATTTTATAAACAA-TTTTTTTATTTGAATTAAAAACTTAT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTAT
* * * * * *
116806 TTAAGTGAGAATTCTTTCTCTGTTGGTTCTTGGCCGAACTTTTGAACTTGTCAAACTTTTATGAG
131 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGAG
**
116871 TTCTTTTATAA-TTTCATTTCC
196 TTCTTTTATAACTTT-GGTTCC
* * * * * *
116892 TTAAAGTGTTCAAGACGATCCACTCTTTGGAGCAA-TTTTCTGAACATTCTATGCTCGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
* * * * *
116956 GCATCATTTGGTCCAATTAGTTTGTAATTTTGTAACCAACTTTTGGT-TTCTGAATTAAAAACAT
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATT-TGAATTAAAAACTT
* * * *
117020 ATTTACGTGAGAATTATTTCTCTC-TGGTTTTTGGCTGAACTTTCGAACTTTTCAAAATTTTACG
129 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACG
*
117084 AGTTCTTTTATAACTTCGGTTCC
194 AGTTCTTTTATAACTTTGGTTCC
* * * *
117107 TTAAAGTATTCAAGACGATCCATTTCATTC-AGTAATTTTTCGAACATTCCATGGTCGGGATATC
1 TTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * **
117171 GCATCATTGGGTCTAAATTGTTTGTCTTTTTGTATGCAACTTTTTGTATTTGAATTAAAAACTTA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* * * * * *
117236 TTTCCAG-GAGAATTGTTTCTCTCTTGGTTTTTGG-TCGTAC-TTCCATACTCGTAAAACTTTTA
130 TTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGCT-GAACTTTCGA-ACTTGTCAAACTTTTA
* *
117298 TGAGTTCTTTTATAACTTAGGTTCC
192 CGAGTTCTTTTATAACTTTGGTTCC
* * *
117323 TTAAAGTATACAAGACAATTCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
*
117388 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA-TTTTTGGTCTTTGAATTAAAAACTTA
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTT-GTATTTGAATTAAAAACTTA
* * * *
117452 TTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGG-TCGAACTTCCGAAATGGTCAAACTTTTATG
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTTTTACG
*
117514 AGTTCATTTATAACTTTGGTTCC
194 AGTTCTTTTATAACTTTGGTTCC
* * * * * * * ** *
117537 TTAAAGTATTCAAGAAGATTCATTCTTTCGAGCAATTTATC-AAAAATCCTTGCTATGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * *
117601 CATTATTTGATCCAAATAGTTTGTCATTTTGTTAACAAC-TTTTGTTCTTTGAATT-AAAACTTA
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTG-TATTTGAATTAAAAACTTA
* * *
117664 TTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGA
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGA
*
117729 GTTCTTTTATAACTTCGGTTCC
195 GTTCTTTTATAACTTTGGTTCC
* * * *
117751 TTAATGTATTCAAGATGCTCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCGAGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATC
* * *
117815 ACATCATTTGCTCCAAATAGTTTGTCATTTTGTAAACAA-TTTTTGTATTTGAATTAAAAACTCA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* * * * * * *
117879 TTTTCGTGAGAATTGTTTCTCTCTTGGTTTTTTG-TCAAACTTCCAAACTCGT-AATACTTTTAC
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCT-GAACTTTCGAACTTGTCAA-ACTTTTAC
*
117942 GAGTTCTTTTATAACTTTAG-TCC
193 GAGTTCTTTTATAACTTTGGTTCC
* * *
117965 TTAAAGTATTCTAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGGTTGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * *
118030 CATCAATTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTTTATTTGAATTAAAAACTTAT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTAT
* * * * * * *
118095 TTAAGTGAGAATTCTTTCTATGTTAGTTCTT-GCTCGAAC-TTCTGAACTT-TTAAAATTATTAC
131 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCT-GAACTTTC-GAACTTGTCAAACTT-TTAC
** *
118157 GAGTTCTTTTATAACTTTTATTGC
193 GAGTTCTTTTATAACTTTGGTTCC
** * *
118181 TTAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGTAA-ATTCCAAGCTCGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG-AACATTCCATGCTCGGGAAATC
* * * *
118245 GCATCATTTGGTCCAAATAGTTTGTGATTTTGTGAACAACTTTTTATCTTTGAATTAAAAACTTA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTA
* **
118310 TTTACGTGAGAATTGTTTCTGTCTTATTTCTTGGC
130 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
118345 CAAACTTTTT
Statistics
Matches: 3750, Mismatches: 639, Indels: 163
0.82 0.14 0.04
Matches are distributed among these distances:
212 23 0.01
213 72 0.02
214 693 0.18
215 1167 0.31
216 1387 0.37
217 394 0.11
218 14 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTAT
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTTGGTTCC
Found at i:114547 original size:431 final size:433
Alignment explanation
Indices: 113658--118351 Score: 4874
Period size: 431 Copynumber: 10.9 Consensus size: 433
113648 CATTGGTTGT
* * ** * * *
113658 TTAAAGTATTAAAGACGATCGATTCCTTCGAGCAATTCTTTAAAACATTCCACGCTCAGAAAATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATT-TTTCGAACATTCCATGCTCGGGAAATC
** ** ** ** * * *
113723 TTATCATTTAATCCAAATAGTTTGTCAAATTGTAAAAAAAAATTGTATTTGAATTCAAAAGTAAT
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAAATTTTGTATTTGAATTAAAAACTTAT
* * * * * * * *
113788 TTACGTGAGAATTGTTTCTCTCTTGATTCTTGGTCGAACTTTTGAACTTGTCAGATTTTTACGTG
130 TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGAG
* * * * * **
113853 TTCTTTTATAATTTTGGTTCCTTAAAGTATTCAAGAT-AATCCATTCTTTCAAGCAATTTTTTGA
195 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCCGA
* * *
113917 ACATTCCATGCTCGGAAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAATCAATTTTT
260 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
113982 TGTATTTGAATTAAAAACTTATTTACGTGAGAATTATTTCACTCTTAGG-TCTTGGCTGAACTT-
325 TGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT-GGTTCTTGGCCGAACTTC
* * * *
114045 TAGAACTTGTCAAGCTTTTA-TGAGTTCTTTTAAAACTTCGGTTCC
389 CA-AACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
* * * *
114090 TTAAAGTATTCAAGACAATACATTCCTAT-GAGCAGTTTTTCGAACATTCCATTCTCGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * *
114154 GCATAATTTGGTCCAAATATTTTGTCATTTTGTAAAAAAAATTTGTATTTGAATTAAAAACTTAC
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAAATTTTGTATTTGAATTAAAAACTTAT
* * * * *
114219 TTAAGTGAGAATTCTTTCTCTGTTGGTTCTTGACCGAACTTTCGAACTTGTCAAACTTTTACGAC
130 TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGAG
* * * * * * *
114284 TTATTTTATAACTTCGGTTGCTTAAAGTATTCAAG-TCAATCAATTCCTTCAAGCAATTTACCAA
195 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCCGA
* * *** *
114348 ACATTCAATACTCGGGAAATCGCATCATTTCCACGAAATAGTTTGTCATTTTGTAAACAACTTTT
260 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
114413 GGTATTTGAATTAAAAACTTACTCACATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAATTTCT
325 TGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCC
* * * *
114478 AAACTTTTCAAACTTTTACT-AGTTTTTTTTATAAATTTGGTTGC
390 AAACTTGTCAAACTTTTACTGAG-TTCTTTTATAACTTTGGTTCC
* * * * * * *
114522 TTAAAGTATTAAAG-CTACCCATTCCTTCGAGCAATTTTTCGAACATTTCATGCTTGAGAAATTG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
** * ** ** *
114586 CATCATTTACTTCCAAATAGTTTTTCA-AAT-TAAAAAGAAAATTGTATTTGAATTAAAAAGTTA
66 CATCATTT-GGTCCAAATAGTTTGTCATTTTGTAAAAA-AATTTTGTATTTGAATTAAAAACTTA
* * * * *
114649 TTTACA-TGAGAATTGTTTCTTTATTGGTTCTTGGCCGAACTTTCGAACTTGTTAGATTTTTATG
129 TTTA-AGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATG
* * * *
114713 AGTTCTTTTATAATTTTGGTTCCTTAAAGTATTCAAGAT-GATCCATTTCTTCGAGCAATTTTTC
193 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCC
* *
114777 GAACATTCCATGCTCGGGAAATTGCATTATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTT
258 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTT
* * * * * * * * *
114842 TTTG-ACTTTCAATTATAAATTTATTTAAGTAAGAACTGTGTCTCT-TGTGGTTCTTGCCCAAAC
323 TTTGTA-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCCGAAC
* * *
114905 TTCCAAACTTGTTAAACTTTTA-TGAGTTTTTTTATAACTTTTGTTCC
386 TTCCAAACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
*
114952 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCAGGG-AATC
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTC-GGGAAATC
* * * ** * * * *
115016 ACATCATTTGGTCTAAATAGTTTGTCATTTTTTAAACAACCTCTGGTCTTTGAATTACAAACTTA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA-AAAATTTTGTATTTGAATTAAAAACTTA
* * * * *
115081 TTTACGAGAGAATTGTTTCTCTCTTAGTTCTTGGCTGAACTTCCGAACTTGTCAAACTTTTATGA
129 TTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGA
* * * * * * * * **
115146 GTTCTTTTATATCATAGGCTCCTTAAAGTATTGAAGA-CGATCCAATCCTTTGAGCATTTTTTAG
194 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCCG
* * * * ** * * * *
115210 AAAATTCCATACTCGAGAAATTGCATTGTCTGATCCAAAATGGTTT-TTATTTTGTAAACATA-T
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACA-ACT
* * * * *
115273 ATTTTTTCTTTGAATAAAAAACTTATTTACGTGGGAATTGTTTCTCTCTTGGGTCTTGGCCGAAC
322 -TTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC
* * * *
115338 TTCCGAACTAGTCAAACTTTGAC-GAGTTCTTTTATAACGTCT-GTTCC
386 TTCCAAACTTGTCAAACTTTTACTGAGTTCTTTTATAAC-TTTGGTTCC
* * *
115385 TTAAAGTATTCAAGATGATACATTCCTGT-GAGCAATTTTTCGAACATTCCATGCTTGGGAAATC
1 TTAAAGTATTCAAGACGATCCATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * **
115449 GCATAATTTGGTCCAAATAGGTTGTCAATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTT
65 GCATCATTTGGTCCAAATAGTTTGTC-ATTTTGTAAA-AAAATTTTGTATTTGAATTAAAAACTT
* * * **
115514 ATTTAAGTGAGAATTCTTTCACTGTTTATTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATG
128 ATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATG
* ** * * * *
115579 AGTTCTTTTATAATTTCATTTCCTTAAAGTATTCAAGA-CGGTCCATTCCTTGGAGTAATTTTCA
193 AGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCC
* * * * *
115643 AAACATTCCATGCTCGAGAAATCACATCATTTGGTCCAATTAGTGTGTCATTTTGTAAACAACTT
258 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
115708 TTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCTT-GTTCTTGGCTGAACTT
323 TTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * * *
115772 TCGAACTTTTCAAA-TTTTAC-GAGTTCTTTTATAA-TTTCCGTTCC
388 CCAAACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTT-GGTTCC
* * * * * * * *
115816 GTAAAGTATTTAAGACGATCCATTCCATCTAACAATTTTTTGAACATTCCATGGTCGGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * * * *
115881 CATCATTTGGTCCAAATAGTTTATCATTTTGTAAACAACTTTTGGTCTTTGAATTAATAACTTCT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAAATTTT-GTATTTGAATTAAAAACTTAT
** * * * * * * * **
115946 TTCCGAGAGAATTGTTTGTCTCAT-GTTCTTGGCTGAACTTTCGAGCTTTTCAAAATTTTACAAG
130 TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGAG
* * * * ** *
116010 TTCTTTTACAATTTCGATTCCTTAAAGTATCCAAGAT-GATCCATTCCAACTAGCAA-TTTCTCG
195 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTC-CG
* *
116073 AACTTTCCATGGTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTG-AAAGCAACTT
259 AACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA-CAACTT
* * * * * * * * * *
116137 TTGGTATTTGAATTTAAAACTTCTTTCCGGGAGGATTGTTTCCCTCGTGGTTCTT-GCCCAAATT
323 TTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
*
116201 CCGAAA-TTGTC-AACTTTTA-TGAGTTCTTTTATAACTTTGGCTCC
388 CC-AAACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
* * * * * * * *
116245 ATGAAGTATTCAAAACGATCTATTCCTCCAAGCAATTTTTTGAACATTCCATGCTCGGGGAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * * * *
116310 CATCTTTTGGTCCAAGTAGTTTGTCATTTTGTAAACAAATTTTGGTCTTAGAATTACAAACTTAT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAAATTTT-GTATTTGAATTAAAAACTTAT
* * * ** * *
116375 TTACA-TGATAATGGTTTCTCTCTTGGTTTTTGGATGAACTTCCTAACTTGTCAAACTTTTATGA
130 TTA-AGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGA
* * * * ** *
116439 GTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGAT-GATCCAATCCATATAGCAATTGTTCG
194 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATT-TTCC
* * * * * *
116503 GAA-ATTTCATGCTCGAGAAATTGCATTATTTGATCCAAATAGTTTGTCATTTTGTAAACAAATT
258 GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTT
* * * *
116567 TTTTTCATTCG-ATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGGTCTTGGCCGAACT
323 TTTGT-ATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACT
* * * * ***
116631 TCCGAACTTGTCAAAC-TTTATTCAATTCTTTTATAACTTCAATTCC
387 TCCAAACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
* * * *
116677 TTAAAGTATTCAAGATGATACATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGAGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * *
116742 CATCATTTGGTCCAAATAGTTTGTCATTTTATAAACAATTTTTTTATTTGAATTAAAAACTTATT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAAATTTTGTATTTGAATTAAAAACTTATT
* * *
116807 TAAGTGAGAATTCTTTCTCTGTTGGTTCTTGGCCGAACTTTTGAACTTGTCAAACTTTTATGAGT
131 TAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGAGT
* ** * * * * *
116872 TCTTTTATAATTTCATTTCCTTAAAGTGTTCAAGA-CGATCCACTCTTTGGAGCAATTTTCTGAA
196 TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCCGAA
* * * * * *
116936 CATTCTATGCTCGAGAAATCGCATCATTTGGTCCAATTAGTTTGTAATTTTGTAACCAACTTTTG
261 CATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTT
* * * * *
117001 GT-TTCTGAATTAAAAACATATTTACGTGAGAATTATTTCTCTC-TGGTTTTTGGCTGAACTTTC
326 GTATT-TGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCC
* * * *
117064 GAACTTTTCAAAATTTTAC-GAGTTCTTTTATAACTTCGGTTCC
390 AAACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
* * * *
117107 TTAAAGTATTCAAGACGATCCATTTCATTC-AGTAATTTTTCGAACATTCCATGGTCGGGATATC
1 TTAAAGTATTCAAGACGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATC
* * * * ** **
117171 GCATCATTGGGTCTAAATTGTTTGTCTTTTTGTATGCAACTTTTTGTATTTGAATTAAAAACTTA
65 GCATCATTTGGTCCAAATAGTTTGTCATTTTGTA-AAAAAATTTTGTATTTGAATTAAAAACTTA
* * * * * * *
117236 TTTCCAG-GAGAATTGTTTCTCTCTTGGTTTTTGGTCGTAC-TTCCATACTCGTAAAACTTTTAT
129 TTT-AAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGA-ACTTGTCAAACTTTTAT
* * * * *
117299 GAGTTCTTTTATAACTTAGGTTCCTTAAAGTATACAAGA-CAATTCATTCCTTCGAGCAATTTTT
192 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTC
117363 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA-T
257 CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT
* *
117427 TTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTCTTGGTCGAAC
322 TTTT-GTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC
* *
117490 TTCCGAAA-TGGTCAAACTTTTA-TGAGTTCATTTATAACTTTGGTTCC
386 TTCC-AAACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
* * * * * * * ** *
117537 TTAAAGTATTCAAGAAGATTCATTCTTTCGAGCAATTTATC-AAAAATCCTTGCTATGGAAATCA
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* * * * * *
117601 CATTATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTGTTCTTTGAATT-AAAACTTAT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAAATTTTG-TATTTGAATTAAAAACTTAT
* * * *
117665 TTACGTGAGAATTATTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAG
130 TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGAG
* * *
117730 TTCTTTTATAACTTCGGTTCCTTAATGTATTCAAGAT-GCTCCATTCCTTCGAGCAATTTTCTGA
195 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCCGA
* * *
117794 ACATTCCATGCTCGAGAAATCACATCATTTGCTCCAAATAGTTTGTCATTTTGTAAACAA-TTTT
260 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
117858 TGTATTTGAATTAAAAACTCATTTTCGTGAGAATTGTTTCTCTCTTGGTTTTTTGTCAAACTTCC
325 TGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCC
* *
117923 AAACTCGT-AATACTTTTAC-GAGTTCTTTTATAACTTTAG-TCC
390 AAACTTGTCAA-ACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
* * *
117965 TTAAAGTATTCTAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGGTTGGGAAATCG
1 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
* ** *
118030 CATCAATTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTTTATTTGAATTAAAAACTTAT
66 CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAA-AAAATTTTGTATTTGAATTAAAAACTTAT
* * * * * * *
118095 TTAAGTGAGAATTCTTTCTATGTTAGTTCTT-GCTCGAAC-TTCTGAACTT-TTAAAATTATTAC
130 TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGC-CGAACTTTC-GAACTTGTCAAACTT-TTAT
*** * * * *
118157 GAGTTCTTTTATAACTTTTATTGCTTAAAGTATTCAAGAT-AATCCATTCCTTCGAGAAATTTTT
192 GAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTC
* * *
118221 CGTAA-ATTCCAAGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTGATTTTGTGAACAAC
257 CG-AACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAAC
* * * ** *
118285 TTTTTATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTGTCTTATTTCTTGGCCAAAC
321 TTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC
118350 TT
386 TT
118352 TTTTCGAACA
Statistics
Matches: 3518, Mismatches: 656, Indels: 177
0.81 0.15 0.04
Matches are distributed among these distances:
427 33 0.01
428 235 0.07
429 519 0.15
430 665 0.19
431 1259 0.36
432 401 0.11
433 223 0.06
434 183 0.05
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (433 bp):
TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCG
CATCATTTGGTCCAAATAGTTTGTCATTTTGTAAAAAAATTTTGTATTTGAATTAAAAACTTATT
TAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTATGAGT
TCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATCGATCCATTCCTTCGAGCAATTTTCCGAA
CATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTT
GTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCA
AACTTGTCAAACTTTTACTGAGTTCTTTTATAACTTTGGTTCC
Found at i:118654 original size:351 final size:349
Alignment explanation
Indices: 118000--118699 Score: 931
Period size: 351 Copynumber: 2.0 Consensus size: 349
117990 CTTCGAGCAA
*
118000 TTTTTCGAACATTCCATGGTTGGGAAATCGCATCAATTGGTCCAAATAGTTTGTCATTTTGTAAA
1 TTTTTCGAACATTCCATGGTTGGGAAATCGCATCAATTGGTCCAAATAGATTGTCATTTTGTAAA
* ** * * *
118065 CAATTTTTTTTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTATGTTAGTTCTTGCTC
66 CAACTTTTGGTATATGAATTAAAAACTTATTTAAGGGAGAATTCTTTCTATCTTAGTTCTTGCTC
* ** ** * *
118130 GAACTTCTGAACTTTTAAAATTATTACGAGTTCTTTTATAACTTTTATTGCTTAAAGTATTCAAG
131 CAACTTCCAAACTAGTAAAATTATTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAG
* *
118195 ATAATCCATTCCTTCGAGAAATTTTTCGTAAATTCCAAGCTCGGGAAATCGCATCATTTGGTCCA
196 ACAATCCATTCCTTCGAGAAATTTTTCGTAAATTCCAAGCTCGGGAAATCGCATCATTTAGTCCA
* * * * *
118260 AATAGTTTGTGATTTTGTGAACAACTTTTTATCTTTGAATTAAAAACTTATTTACGTGAGAATTG
261 AATAGTTTGTCATTTTGTAAAAAACTTTTTATCTTTAAATTAAAAACTTATTTACGTAAGAATTG
* *
118325 TTTCTGTCTTATTTCTTGGCCAAACT
326 TTACTCT-TTA-TTCTTGGCCAAACT
* * * *
118351 TTTTTCGAACATTCCATGGTTGGGATATCGCATCATTTGGTTCAAATAGATTGTCATTTTGTAAG
1 TTTTTCGAACATTCCATGGTTGGGAAATCGCATCAATTGGTCCAAATAGATTGTCATTTTGTAAA
** * * * *
118416 CAACTTTTGGTATATGAATTAAAAACTTATTTTCGGGAGAATTGTTTCTCTCTTGGTT-TTTCGT
66 CAACTTTTGGTATATGAATTAAAAACTTATTTAAGGGAGAATTCTTTCTATCTTAGTTCTTGC-T
* * *
118480 CCAACTTCCAAACTAGTACAACTT-TTACGAGTTCTTTTATAACTTTGGTTCCTTAATGTATTCA
130 CCAACTTCCAAACTAGTA-AAATTATTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCA
* * * *
118544 AGGCGATCCATTCCTTTGAGAAATTTTTCG-AACATTCCATGCTCGGGAAATCGCATCATTTAGT
194 AGACAATCCATTCCTTCGAGAAATTTTTCGTAA-ATTCCAAGCTCGGGAAATCGCATCATTTAGT
* *
118608 CCGAATAGTTTGTCATTTTGTAAAAAAC-TTTTAGTTTTTAAATTAAAAACTTATTTACGTAAGA
258 CCAAATAGTTTGTCATTTTGTAAAAAACTTTTTA-TCTTTAAATTAAAAACTTATTTACGTAAGA
*
118672 ATTGTTACTCTTTATTCTTGGTCAAACT
322 ATTGTTACTCTTTATTCTTGGCCAAACT
118700 CCTGAATTTG
Statistics
Matches: 302, Mismatches: 43, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
349 13 0.04
350 13 0.04
351 272 0.90
352 4 0.01
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.42
Consensus pattern (349 bp):
TTTTTCGAACATTCCATGGTTGGGAAATCGCATCAATTGGTCCAAATAGATTGTCATTTTGTAAA
CAACTTTTGGTATATGAATTAAAAACTTATTTAAGGGAGAATTCTTTCTATCTTAGTTCTTGCTC
CAACTTCCAAACTAGTAAAATTATTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAG
ACAATCCATTCCTTCGAGAAATTTTTCGTAAATTCCAAGCTCGGGAAATCGCATCATTTAGTCCA
AATAGTTTGTCATTTTGTAAAAAACTTTTTATCTTTAAATTAAAAACTTATTTACGTAAGAATTG
TTACTCTTTATTCTTGGCCAAACT
Found at i:118863 original size:565 final size:566
Alignment explanation
Indices: 117786--118916 Score: 1558
Period size: 565 Copynumber: 2.0 Consensus size: 566
117776 CTTCGAGCAA
*
117786 TTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGCTCCAAATAGTTTGTCATTTTGTAAA
1 TTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGCTCCAAATAGATTGTCATTTTGTAAA
* * * *
117851 CAATTTTTGTATTTGAATTAAAAACTCATTTTCGTGAGAATTGTTTCTCTCTTGGTTTTTTGTCA
66 CAATTTTGGTATATGAATTAAAAACTCATTTTCGGGAGAATTGTTTCTCTCTTGGTTTTTCGTCA
* *
117916 AACTTCCAAACTCGTAATACTTTTACGAGTTCTTTTATAACTTTAGTCCTTAAAGTATTCTAGAC
131 AACTTCCAAACTAGTAATACTTTTACGAGTTCTTTTATAACTTTAGTCCTTAAAGTATTCAAGAC
* * * *
117981 GATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGGTTGGGAAATCGCATCAATTGGTCCAAA
196 GATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAATTAGTCCAAA
* ** * *
118046 TAGTTTGTCATTTTGTAAACAATTTTTTTTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTT
261 TAGTTTGTCATTTTGTAAAAAATTTTAGTTATTTAAATTAAAAACTTATTTAAGTAAGAATTCTT
* * * *
118111 TCTATGTTAGTTCTTGCTCGAACTTCTGAACTTTTAAAATTATTACGAGTTCTTTTATAACTTTT
326 ACTATGTTAGTTCTTGCTCAAACTCCTGAACTTTTAAAATTATTACGAGTTCTTTTATAACTTTG
* * * * * ** *
118176 ATTGCTTAAAGTATTCAAGATAATCCATTCCTTCGAGAAATTTTTCGTAAATTCCAAGCTCGGGA
391 ACTCCTTAAAGTATTAAAGACAATCCATTCCTTCGAGAAATTTTCCAAAAATTCCAAGCTCAGGA
* * * *
118241 AATCGCATCATTTGGTCCAAATAGTTTGTGATTTTGTGAACAACTTTTTATCTTTGAATTAAAAA
456 AATCACATCATTTGATCCAAATAGTTTGTCATTTTGTGAACAACTTTTGATCTTTGAATTAAAAA
* * *
118306 CTTATTTACGTGAGAATTGTTTCTGTCTTATTTCTTGGCCAAACTT
521 CTTATTTAAGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCAAACTT
* * * * * * * *
118352 TTTTC-GAACATTCCATGGTTGGGATATCGCATCATTTGGTTCAAATAGATTGTCATTTTGTAAG
1 TTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGCTCCAAATAGATTGTCATTTTGTAAA
*
118416 CAACTTTTGGTATATGAATTAAAAACTTATTTTCGGGAGAATTGTTTCTCTCTTGGTTTTTCGTC
66 CAA-TTTTGGTATATGAATTAAAAACTCATTTTCGGGAGAATTGTTTCTCTCTTGGTTTTTCGTC
* * *
118481 CAACTTCCAAACTAGTACA-ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAATGTATTCAA
130 AAACTTCCAAACTAGTA-ATACTTTTACGAGTTCTTTTATAACTTTAG-TCCTTAAAGTATTCAA
* * *
118545 GGCGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTAGTCC
193 GACGATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAATTAGTCC
* *
118610 GAATAGTTTGTCATTTTGTAAAAAACTTTTAGTT-TTTAAATTAAAAACTTATTTACGTAAGAAT
258 AAATAGTTTGTCATTTTGTAAAAAA-TTTTAGTTATTTAAATTAAAAACTTATTTAAGTAAGAAT
* * * * *
118674 TGTTACTCT-TTA-TTCTTGGTCAAACTCCTGAA-TTTGTCAAACTT-TTATGAGTTCTTTTATA
322 TCTTACTATGTTAGTTCTTGCTCAAACTCCTGAACTTT-T-AAAATTATTACGAGTTCTTTTATA
* * *
118735 ACTTTGACTCCTTAAAGTATTAAAGACAATCCATTCCTTTGAGCAATTTTCCAAAAATTCCATGC
385 ACTTTGACTCCTTAAAGTATTAAAGACAATCCATTCCTTCGAGAAATTTTCCAAAAATTCCAAGC
* *
118800 TCAGGAAATCACATTATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTGGA-CTTTGAA
450 TCAGGAAATCACATCATTTGATCCAAATAGTTTGTCATTTTGTGAACAACTTTT-GATCTTTGAA
* * *
118864 TTAAAATCTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
514 TTAAAAACTTATTTAAGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCAAACTT
118917 CCAAACTTGT
Statistics
Matches: 493, Mismatches: 65, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
564 3 0.01
565 243 0.49
566 112 0.23
567 129 0.26
568 6 0.01
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (566 bp):
TTTTCTGAACATTCCATGCTCGAGAAATCACATCATTTGCTCCAAATAGATTGTCATTTTGTAAA
CAATTTTGGTATATGAATTAAAAACTCATTTTCGGGAGAATTGTTTCTCTCTTGGTTTTTCGTCA
AACTTCCAAACTAGTAATACTTTTACGAGTTCTTTTATAACTTTAGTCCTTAAAGTATTCAAGAC
GATCCATTCCTTCGAGAAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCAATTAGTCCAAA
TAGTTTGTCATTTTGTAAAAAATTTTAGTTATTTAAATTAAAAACTTATTTAAGTAAGAATTCTT
ACTATGTTAGTTCTTGCTCAAACTCCTGAACTTTTAAAATTATTACGAGTTCTTTTATAACTTTG
ACTCCTTAAAGTATTAAAGACAATCCATTCCTTCGAGAAATTTTCCAAAAATTCCAAGCTCAGGA
AATCACATCATTTGATCCAAATAGTTTGTCATTTTGTGAACAACTTTTGATCTTTGAATTAAAAA
CTTATTTAAGTGAGAATTGTTTCTCTCTTAGTTCTTGGCCAAACTT
Found at i:119015 original size:216 final size:216
Alignment explanation
Indices: 118351--120242 Score: 2051
Period size: 216 Copynumber: 8.9 Consensus size: 216
118341 TGGCCAAACT
* * * * * * *
118351 TTTTTCGAACATTCCATGGTTGGGATATCGCATCATTTGGTTCAAATAGATTGTCATTTTGTAAG
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
* * * * *
118416 CAACTTTTGGTA-TATGAATTAAAAACTTATTTTCGGGAGAATTGTTTCTCTCTTGGTTTTTCGT
66 CAACTTTTGG-ACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GG
* *
118480 CC-AACTTCCAAACTAGT-ACAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAATGTATTC
129 CCGAACTTCCAAACTTGTCA-AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
* * *
118543 AAGGCGATCCATTCCTTTGAGAAA
193 AAGACGATCCATTCCTTCGAGCAA
*
118567 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTT-AGTCCGAATAGTTTGTCATTTTGTAA
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGA-TCCAAATAGTTTGTCATTTTGTAA
* * ** * * * * *
118631 AAAACTTTTAGTTTTTAAATTAAAAACTTATTTACGTAAGAATTGTTACTCT-TT-ATTCTTGGT
65 ACAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
* * * * ** *
118694 CAAAC-TCCTGAATTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGACTCCTTAAAGTATTAA
130 CGAACTTCC-AAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCA
* *
118758 AGACAATCCATTCCTTTGAGCAA
194 AGACGATCCATTCCTTCGAGCAA
* * * * * * *
118781 TTTTCCAAAAATTCCATGCTCAGGAAATCACATTATTTGATCCAAATAGTTTGTCATTTTGTTAA
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
* *
118846 CAACTTTTGGACTTTGAATTAAAATCTTATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
66 CAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
* * *
118911 GAACTTCCAAACTTGTCAAACTTTTACGAGATCTTTTATAACTTTGGTACCTTAATGTATTCAAG
131 GAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
*
118976 ACGATCCATTCCTTCGACCAA
196 ACGATCCATTCCTTCGAGCAA
* * * * * *
118997 TTTTTCGAACCTTCCATGCTCGGGAAATCACATCGTTTGGTCCAATTGGTTTGTCATTTTGTAAA
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
* * * **
119062 CAACTTTTGGTCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTT-T-TGTTGGTTCTTGGTA
66 CAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
** * ** *
119125 GAACTTTTGAAA-TTGTCAAGCTTTTATAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATCCAA
131 GAAC-TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
*
119189 GACGATCCATTCCTTAGAGCAA
195 GACGATCCATTCCTTCGAGCAA
* * * * *
119211 TTTTTCGAAAATTCCATGCTCAGGAAATCACATTATTTGATCCAAATAGTTTGTCATTTTGTTAA
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
*** * * *
119276 CAACTTTTTTTCTTTGAATTAAAAACTTATTTACATGAGTATTGTTTCTCTCTTAGTTCTTGGCC
66 CAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
* * * *
119341 GAACTT-TAGAACTTGTCAAAATTTTACGAGTTCTTTTATTACTTTAGTTCCTTAAAGTATTCAA
131 GAACTTCCA-AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* *
119405 GATGCTCCATTCCTTCGAGCAA
195 GACGATCCATTCCTTCGAGCAA
* * * * * *
119427 TTTTCCGAACATTCCATGCTCAGAAAATCGCATCATTTGCTCAAAATAGTTTGTCATTTTCTAAA
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
* * * * *
119492 CAATTTTTTGTA-TTTGAATTAAAAACTTATTTTA-GTGAGAATTCTTTCTCTGTAGGTTCTTGG
66 CAA-CTTTTGGACTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * *
119555 CTGAACTTTCAAACTTGTCAAACTTTTACAAGCTCTTTTATAA-TTTCGTTTCCTTAAAGTATTC
129 CCGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTC
119619 AAGACGATCCATTCCTTCGAGCAA
193 AAGACGATCCATTCCTTCGAGCAA
* *
119643 TTTTCCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTCTAAA
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
* ** * * * * * * *
119708 TAGTTTTTTG-CATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTTTTTGTTGGTT-TGTAG
66 CAACTTTTGGAC-TTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCT-TGG
* * * *
119771 CCGAACATT-CAAACTTGTTAAACTTTTACGAGTTCTTTTATAATTTTGTTTTCTTAAAGTATTC
129 CCGAAC-TTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTC
*
119835 AAGACGATCCATTCCTTCGAGTAA
193 AAGACGATCCATTCCTTCGAGCAA
* * * *
119859 TTTTTTGAACATTCCATGCTCGGAAAATCGCATC----GGTCCAATTAGTTTGTCATTTTGTAAA
1 TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
* * * ** *
119920 CCAGTTTTGGTCTTTGAATTAAAAAACTTATTTACGTGAGAATTGTTTCTCT-TCAGTTTTTGGC
66 CAACTTTTGGACTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC
* * * *
119984 TG-A----C---CTT-TCGAA---TTACGAGTTTTTTTATAACTTCGGTTCCTTAAAGTATTCAA
130 CGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAA
* *
120037 GACGATCCATTTCTTCCAGCAA
195 GACGATCCATTCCTTCGAGCAA
* * * * * *
120059 TTTTCCTAACATTCCATAG-TCGGGATATCGAATCATTTGGTCCAAATAGTTTTTCATTTTGTAA
1 TTTTTCGAACATTCCAT-GCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAA
* * * *
120123 GA-AACTTTTGGTA-TTTGAATTAAAATCTTATTT-CGGGAGAATTGTTTCTCTTTTGGTTTTTG
65 -ACAACTTTTGG-ACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
120185 GTCGAACTTCCAAACTAGTAAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
128 GCCGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA
120243 TGACATTCAA
Statistics
Matches: 1410, Mismatches: 219, Indels: 95
0.82 0.13 0.06
Matches are distributed among these distances:
200 81 0.06
201 1 0.00
202 17 0.01
203 24 0.02
204 43 0.03
205 1 0.00
207 1 0.00
208 1 0.00
211 3 0.00
212 48 0.03
213 34 0.02
214 349 0.25
215 60 0.04
216 729 0.52
217 18 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
TTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAA
CAACTTTTGGACTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCC
GAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAG
ACGATCCATTCCTTCGAGCAA
Found at i:119161 original size:430 final size:430
Alignment explanation
Indices: 118381--120244 Score: 2135
Period size: 430 Copynumber: 4.4 Consensus size: 430
118371 TGGGATATCG
* * * *
118381 CATCATTTGGTTCAAATAGATTGTCATTTTG-TAAGCAACTTTTGGTA-TATGAATTAAAAACTT
1 CATCATTTGATCCAAATAGTTTGTCATTTTGTTAA-CAACTTTTGG-ACTTTGAATTAAAAACTT
** * * * *
118444 ATTTTCGGGAGAATTGTTTCTCTCTTGGTTTTTCGTCC-AACTTCCAAACTAGT-ACAACTTTTA
64 ATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTT-GGCCGAACTTCCAAACTTGTCA-AACTTTTA
* * *
118507 CGAGTTCTTTTATAACTTTGGTTCCTTAATGTATTCAAGGCGATCCATTCCTTTGAGAAATTTTT
127 CGAGTTCTTTTATAACTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTT
* * *
118572 CGAACATTCCATGCTCGGGAAATCGCATCATTTAGTCCGAA-TAGTTTGTCATTTTGTAAAAAAC
192 CGAACATTCCATGCTCGGAAAATCGCATCATTTGGTCC-AATTAGTTTGTCATTTTGTAAACAAC
* * * * * * ** *
118636 TTTTAGTTTTTAAATTAAAAACTTATTTACGTAAGAATTGTTACTCTTTATTCTTGG-TCAAACT
256 TTTTGGTCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGCT-GAACT
** * * ** * *
118700 CCTGAATTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGACTCCTTAAAGTATTAAAGACAAT
320 TTTGAAATTGTCAAACTTTTATAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* *
118765 CCATTCCTTTGAGCAATTTTCCAAAAATTCCATGCTCAGGAAATCA
385 CCATTCCTTCGAGCAATTTTCCGAAAATTCCATGCTCAGGAAATCA
* *
118811 CATTATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAATCTTAT
1 CATCATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAAACTTAT
118876 TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGAG
66 TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGAG
* * *
118941 ATCTTTTATAACTTTGGTACCTTAATGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCGAA
131 TTCTTTTATAACTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
* * * * *
119006 CCTTCCATGCTCGGGAAATCACATCGTTTGGTCCAATTGGTTTGTCATTTTGTAAACAACTTTTG
196 CATTCCATGCTCGGAAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTAAACAACTTTTG
* *
119071 GTCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTTTTGTTGGTTCTTGG-TAGAACTTTTGA
261 GTCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGCT-GAACTTTTGA
* *
119135 AATTGTCAAGCTTTTATAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATCCAAGACGATCCATT
325 AATTGTCAAACTTTTATAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATT
* *
119200 CCTTAGAGCAATTTTTCGAAAATTCCATGCTCAGGAAATCA
390 CCTTCGAGCAATTTTCCGAAAATTCCATGCTCAGGAAATCA
* ***
119241 CATTATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTTTTCTTTGAATTAAAAACTTAT
1 CATCATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAAACTTAT
* * * *
119306 TTACA-TGAGTATTGTTTCTCTCTTAGTTCTTGGCCGAACTT-TAGAACTTGTCAAAATTTTACG
66 TTA-AGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCA-AACTTGTCAAACTTTTACG
* * * * * *
119369 AGTTCTTTTATTACTTTAGTTCCTTAAAGTATTCAAGATGCTCCATTCCTTCGAGCAATTTTCCG
129 AGTTCTTTTATAACTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG
* * * * * *
119434 AACATTCCATGCTCAGAAAATCGCATCATTTGCTCAAAATAGTTTGTCATTTTCTAAACAATTTT
194 AACATTCCATGCTCGGAAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTAAACAACTTT
* * * *
119499 TTGTATTTGAATTAAAAACTTATTTTA-GTGAGAATTCTTTCTCTGTAGGTTCTTGGCTGAAC-T
259 TGGTCTTTGAATTAAAAAATTA-TTTACGTGAGAATTGTTTCTCT-T-GGTTCTTGGCTGAACTT
* * * *
119562 TTCAAACTTGTCAAACTTTTACAAGCTCTTTTATAA-TTTCGTTTCCTTAAAGTATTCAAGACGA
321 TTGAAA-TTGTCAAACTTTTATAAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGA
* * *
119626 TCCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCGGGAAATCG
384 TCCATTCCTTCGAGCAATTTTCCGAAAATTCCATGCTCAGGAAATCA
* * * ** *
119673 CATCATTTGATCCAAATAGTTTGTCATTTTCTAAATAGTTTTTTG-CATTTGAATTAAAAACTTA
1 CATCATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTGGAC-TTTGAATTAAAAACTTA
* * * * * *
119737 TTTAAGTGAGAATTCTTTTTTTGTTGGTT-TGTAGCCGAACATT-CAAACTTGTTAAACTTTTAC
65 TTTAAGTGAGAATTGTTTCTCTCTTGGTTCT-TGGCCGAAC-TTCCAAACTTGTCAAACTTTTAC
* * * * * *
119800 GAGTTCTTTTATAATTTTGTTTTCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTT
128 GAGTTCTTTTATAACTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC
* *
119865 GAACATTCCATGCTCGGAAAATCGCATC----GGTCCAATTAGTTTGTCATTTTGTAAACCAGTT
193 GAACATTCCATGCTCGGAAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTAAACAACTT
* * *
119926 TTGGTCTTTGAATTAAAAAACTTATTTACGTGAGAATTGTTTCTCTTCAGTTTTTGGCTGACCTT
258 TTGGTCTTTGAATTAAAAAA-TTATTTACGTGAGAATTGTTTCTCTT-GGTTCTTGGCTGAACTT
* * * *
119991 TCG-AA-T-T---AC------GAGTTTTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATC
321 TTGAAATTGTCAAACTTTTATAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* * * * * *
120044 CATTTCTTCCAGCAATTTTCCTAACATTCCATAG-TCGGGATATCGA
386 CATTCCTTCGAGCAATTTTCCGAAAATTCCAT-GCTCAGGAAATC-A
* * * *
120090 -ATCATTTGGTCCAAATAGTTTTTCATTTTG-TAAGAAACTTTTGGTA-TTTGAATTAAAATCTT
1 CATCATTTGATCCAAATAGTTTGTCATTTTGTTAA-CAACTTTTGG-ACTTTGAATTAAAAACTT
* * * * * * *
120152 ATTT-CGGGAGAATTGTTTCTCTTTTGGTTTTTGGTCGAACTTCCAAACTAGTAAAACTTTTACG
64 ATTTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACG
120216 AGTTCTTTTATAACTTTGGTTCCTTAATG
129 AGTTCTTTTATAACTTTGGTTCCTTAATG
120245 ACATTCAACG
Statistics
Matches: 1235, Mismatches: 171, Indels: 71
0.84 0.12 0.05
Matches are distributed among these distances:
414 2 0.00
415 72 0.06
416 127 0.10
417 3 0.00
422 2 0.00
425 1 0.00
426 1 0.00
428 63 0.05
429 28 0.02
430 625 0.51
431 22 0.02
432 285 0.23
433 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (430 bp):
CATCATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTTGGACTTTGAATTAAAAACTTAT
TTAAGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTTGTCAAACTTTTACGAG
TTCTTTTATAACTTTGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAA
CATTCCATGCTCGGAAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTTCTCTTGGTTCTTGGCTGAACTTTTGAA
ATTGTCAAACTTTTATAAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTC
CTTCGAGCAATTTTCCGAAAATTCCATGCTCAGGAAATCA
Found at i:119174 original size:781 final size:779
Alignment explanation
Indices: 117613--119108 Score: 1974
Period size: 781 Copynumber: 1.9 Consensus size: 779
117603 TTATTTGATC
* * * * *
117613 CAAATAGTTTGTCATTTTGTTAACAACTTTTGTTCTTTGAATTAAAACTTATTTACGTGAGAATT
1 CAAATAGATTGTCATTTTGTTAACAACTTTTGGTATATGAATTAAAACTTATTTACGGGAGAATT
* *
117678 ATTTCTCTCTTGGTTCTTGGCCGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
66 ATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTAGTCAAACTTTTACGAGTTCTTTTATAACT
* * *
117743 TCGGTTCCTTAATGTATTCAAGATGCTCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCG
131 TCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCG
* * *
117808 AGAAATCACATCATTTGCTCCAAATAGTTTGTCATTTTGTAAACAATTTTTGTATTTGAATTAAA
196 AGAAATCACATCATTTGCTCCAAATAGTTTGTCATTTTGTAAAAAATTTTAGTATTTAAATTAAA
* * * * * *
117873 AACTCATTTTCGTGAGAATTGTTTCTCTCTTGGTTTTTTGTCAAACTTCCAAACTCGTAATACTT
261 AACTCATTTACGTAAGAATTGTTACTCTCTTGATTCTTGGTCAAACTTCCAAACTCGTAATACTT
* ** *
117938 TTACGAGTTCTTTTATAACTTTAGTCCTTAAAGTATTCTAGACGATCCATTCCTTCGAGCAATTT
326 TTACGAGTTCTTTTATAACTTTACTCCTTAAAGTATTAAAGACAATCCATTCCTTCGAGCAATTT
* * * * ** * *
118003 TTCGAACATTCCATGGTTGGGAAATCGCATCAATTGGTCCAAATAGTTTGTCATTTTGTAAACAA
391 TCCAAAAATTCCATGCTCAGGAAATCACATCAATTGATCCAAATAGTTTGTCATTTTGTAAACAA
* ** *
118068 TTTTTTTTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTATGTTAGTTCTTGCTCGAA
456 TCTTTTGGATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTATCTTAGTTCTTGCTCGAA
** * * * ** *
118133 CTTCTGAACTTTTAAAATTATTACGAGTTCTTTTATAACTTTTATTGCTTAAAGTATTCAAGATA
521 CTTCCAAACTTTCAAAATTATTACGAGATCTTTTATAACTTTGATACCTTAAAGTATTCAAGACA
* *
118198 ATCCATTCCTTCGAGAAATTTTTCGTAAATTCCAAGCTCGGGAAATCGCATCATTTGGTCCAAAT
586 ATCCATTCCTTCGACAAATTTTTCGTAAATTCCAAGCTCGGGAAATCACATCATTTGGTCCAAAT
* * * *
118263 AGTTTGTGATTTTGTGAACAACTTTTTATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
651 AGTTTGTCATTTTGTAAACAACTTTTGATCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTT
* * * *
118328 CTGTCTTATTTCTTGGCCAAACTTTTTTCGAACATTCCATGGTTGGGATATCGCATCATTTGGTT
716 CTGTCTTAGTTCTTGGCCAAAC-TTTTTCGAACATTCCAAGCTTGGGATATCGCATAATTTGGTT
*
118393 CAAATAGATTGTCATTTTG-TAAGCAACTTTTGGTATATGAATTAAAAACTTATTTTCGGGAGAA
1 CAAATAGATTGTCATTTTGTTAA-CAACTTTTGGTATATGAATT-AAAACTTATTTACGGGAGAA
* * *
118457 TTGTTTCTCTCTTGGTTTTTCGTCC-AACTTCCAAACTAGT-ACAACTTTTACGAGTTCTTTTAT
64 TTATTTCTCTCTTGGTTCTT-GGCCGAACTTCCAAACTAGTCA-AACTTTTACGAGTTCTTTTAT
* * *
118520 AACTTTGGTTCCTTAATGTATTCAAGGCGATCCATTCCTTTGAGAAATTTT-TCGAACATTCCAT
127 AACTTCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCT-GAACATTCCAT
* * * *
118584 GCTCGGGAAATCGCATCATTTAG-TCCGAATAGTTTGTCATTTTGTAAAAAACTTTTAGTTTTTA
191 GCTCGAGAAATCACATCATTT-GCTCCAAATAGTTTGTCATTTTGTAAAAAA-TTTTAGTATTTA
* * * *
118648 AATTAAAAACTTATTTACGTAAGAATTGTTACTCT-TT-ATTCTTGGTCAAAC-TCCTGAATTTG
254 AATTAAAAACTCATTTACGTAAGAATTGTTACTCTCTTGATTCTTGGTCAAACTTCC-AAACTCG
*
118710 TCAA-ACTTTTATGAGTTCTTTTATAACTTTGACTCCTTAAAGTATTAAAGACAATCCATTCCTT
318 T-AATACTTTTACGAGTTCTTTTATAACTTT-ACTCCTTAAAGTATTAAAGACAATCCATTCCTT
* * *
118774 TGAGCAATTTTCCAAAAATTCCATGCTCAGGAAATCACATTATTTGATCCAAATAGTTTGTCATT
381 CGAGCAATTTTCCAAAAATTCCATGCTCAGGAAATCACATCAATTGATCCAAATAGTTTGTCATT
* * * * *
118839 TTGTTAACAA-CTTTTGGACTTTGAATTAAAATCTTATTTAAGTGAGAATTGTTTCTCTCTTGGT
446 TTGTAAACAATCTTTTGGA-TTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTATCTTAGT
* *
118903 TCTTGGC-CGAACTTCCAAACTTGTCAAACTT-TTACGAGATCTTTTATAACTTTGGTACCTTAA
510 TCTT-GCTCGAACTTCCAAACTT-TCAAAATTATTACGAGATCTTTTATAACTTTGATACCTTAA
* * * * *
118966 TGTATTCAAGACGATCCATTCCTTCGACCAATTTTTCG-AACCTTCCATGCTCGGGAAATCACAT
573 AGTATTCAAGACAATCCATTCCTTCGACAAATTTTTCGTAA-ATTCCAAGCTCGGGAAATCACAT
* * * *
119030 CGTTTGGTCCAATTGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAATTATTTA
637 CATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGATCTTTGAATTAAAAAATTATTTA
119095 CGTGAGAATTGTTT
702 CGTGAGAATTGTTT
119109 TTGTTGGTTC
Statistics
Matches: 618, Mismatches: 84, Indels: 27
0.85 0.12 0.04
Matches are distributed among these distances:
779 6 0.01
780 85 0.14
781 475 0.77
782 52 0.08
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (779 bp):
CAAATAGATTGTCATTTTGTTAACAACTTTTGGTATATGAATTAAAACTTATTTACGGGAGAATT
ATTTCTCTCTTGGTTCTTGGCCGAACTTCCAAACTAGTCAAACTTTTACGAGTTCTTTTATAACT
TCGGTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGAAATTTTCTGAACATTCCATGCTCG
AGAAATCACATCATTTGCTCCAAATAGTTTGTCATTTTGTAAAAAATTTTAGTATTTAAATTAAA
AACTCATTTACGTAAGAATTGTTACTCTCTTGATTCTTGGTCAAACTTCCAAACTCGTAATACTT
TTACGAGTTCTTTTATAACTTTACTCCTTAAAGTATTAAAGACAATCCATTCCTTCGAGCAATTT
TCCAAAAATTCCATGCTCAGGAAATCACATCAATTGATCCAAATAGTTTGTCATTTTGTAAACAA
TCTTTTGGATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTATCTTAGTTCTTGCTCGAA
CTTCCAAACTTTCAAAATTATTACGAGATCTTTTATAACTTTGATACCTTAAAGTATTCAAGACA
ATCCATTCCTTCGACAAATTTTTCGTAAATTCCAAGCTCGGGAAATCACATCATTTGGTCCAAAT
AGTTTGTCATTTTGTAAACAACTTTTGATCTTTGAATTAAAAAATTATTTACGTGAGAATTGTTT
CTGTCTTAGTTCTTGGCCAAACTTTTTCGAACATTCCAAGCTTGGGATATCGCATAATTTGGTT
Found at i:120412 original size:177 final size:177
Alignment explanation
Indices: 120090--120419 Score: 481
Period size: 178 Copynumber: 1.9 Consensus size: 177
120080 GGGATATCGA
* *
120090 ATCATTTGGTCCAAATAGTTTTTCATTTTGTAAGAAACTTTTGGTATTTGAATTAAAATCTTATT
1 ATCATTTGGTCCAAATAGTTTGTCATTTTGTAAGAAAATTTTGGTATTTGAATTAAAATCTTATT
*
120155 TCGGGAGAATTGTTTCTCTTTTGGTTTTTGGTCGAACTTCCAAACTAGTAAAACTTTTACGAGTT
66 TCGGGAGAATTGTTTCTC-TTTGGTTTTTGGCCGAACTTCCAAACTAGTAAAACTTTTACGAGTT
120220 CTTTTATAACTTTGGTTCCTTAATGACATTCAACGCTCGGGAAATCAC
130 CTTTTATAACTTTGGTTCCTTAATGACATTCAACGCTCGGGAAATCAC
* *
120268 ATCATTTGGTCCAAATGGTTTGTCATTTTGTAA-ACAAATTTTGGTCTTTGAATTAAGAA-CTTA
1 ATCATTTGGTCCAAATAGTTTGTCATTTTGTAAGA-AAATTTTGGTATTTGAATTAA-AATCTT-
* * * * *
120331 ATTAT-GTGAGAATTGTTTCTC-TTGGTTTTTGGCCGTACTTTCGAAA-TTGTAAAACTTTTATG
63 ATT-TCGGGAGAATTGTTTCTCTTTGGTTTTTGGCCGAAC-TTCCAAACTAGTAAAACTTTTACG
120393 AGTTCTTTTATAACTTTGGTTCCTTAA
126 AGTTCTTTTATAACTTTGGTTCCTTAA
120420 AGTATTTAAG
Statistics
Matches: 137, Mismatches: 10, Indels: 11
0.87 0.06 0.07
Matches are distributed among these distances:
177 57 0.42
178 59 0.43
179 20 0.15
180 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.16, T:0.44
Consensus pattern (177 bp):
ATCATTTGGTCCAAATAGTTTGTCATTTTGTAAGAAAATTTTGGTATTTGAATTAAAATCTTATT
TCGGGAGAATTGTTTCTCTTTGGTTTTTGGCCGAACTTCCAAACTAGTAAAACTTTTACGAGTTC
TTTTATAACTTTGGTTCCTTAATGACATTCAACGCTCGGGAAATCAC
Found at i:120703 original size:216 final size:215
Alignment explanation
Indices: 120245--129227 Score: 9366
Period size: 216 Copynumber: 41.9 Consensus size: 215
120235 TTCCTTAATG
* * * * *
120245 ACATTCAACGCTCGGGAAATCACATCATTTGGTCCAAATGGTTTGTCATTTTGTAAACAAATTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
120310 GGTCTTTGAATTAAGAACTTAATTATGTGAGAATTG-TT-TCTCTTGGTTTTTGGCCGTACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * *
120373 GAAATTGTAAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* *
120438 TTTCTTCAAGCAATTTT-TCGA
195 TTCCTTCGAGCAATTTTCT-GA
* * * * *
120459 AAATTCCATGCTCAGGAAATCACATCATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
120524 GGTCTTTGAATTTAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCA
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTC-
* * * ** * * *
120589 GAACTTGTCAAAATTTTACAAGTTCTTTTATTACTTCAGTTCCTTAAAATATTCAAGATGCTCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
120654 TTCCTTCGAGCAATTTTCTGA
195 TTCCTTCGAGCAATTTTCTGA
* * * * *
120675 ACATTCCATGCTCAGGAAATCGCATCATTTGCTCGAAATAGTTTGTCATTTTCTAAACAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
120740 TGTATTTGAGTTAAAAACTTATTTTA-GTGAGAATTCTTTCTCTGTAT-GTTATTGGCTGAACTT
66 GGTATTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCCGAAC-T
* * * * * *
120803 TCAAACTTGTCAAACTTTTACGAGCTCTTTTATAAATTCGTTTCCTTAAAGTATTCAAAACGATC
128 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* **
120868 CATTCCTTCAAGCAATTTTCCAA
193 CATTCCTTCGAGCAATTTTCTGA
* * * *
120891 ACATTCCATGCTCGGGAAATCACATCATTTGATCCAAATAGTTTGTCATTTTCTAAAC-AGTGTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT-TT
* * * * * * *
120955 TTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTTTGTTGGTTCGTAGCCGAACTTT
65 TGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TT
* * * *
121020 CAAACTTGTTAAACTTTTACGAGTTCTTTTATAA-TTTCGTTTTCTTAAAGTATTCAAGACGATC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGATC
* *
121084 CATTCCTTCGAGTAATTTTTTGA
193 CATTCCTTCGAGCAATTTTCTGA
** * * * *
121107 ACATTCCATGCTCGAAAAATTGCATC----GGTCCAATTAGTTTGTCATTTTGTAAACCAGTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
121168 GGTCTTTGAGTTAAAAAACTTATTTATGTGAGAATTGTTTCTCTC-TAGTTTTTGGCTGAACTTT
66 GGTATTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TT
* * * * * *
121232 TGAACTTTTCAAAATTTTACGAGTTTTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
*
121297 ATTCCTTCCAGCAATTTT-TCGA
194 ATTCCTTCGAGCAATTTTCT-GA
* * *
121319 ACATTCCATAG-TCGGGATATCGAATCATTTGGTCCAAATAGTTTTTCATTTTGTAAGA-AACTT
1 ACATTCCAT-GCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAA-ACAACTT
* * * ** * *
121382 TTGGTATTTGAATTAAAATCTTATTT-CGGGAGAATTGTTTCTCTTTTTATTTTTGGTCGAACTT
64 TTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * * * * *
121446 CTAAACTAGTCAAAATTTTTACGAGTTCTTTTATAACTTTGGTTTCTTAATGTATTCAAGATGAT
129 C-GAACTTGTC-AAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
* *
121511 CTATTCCTTCGAGCAATTTT-TATA
192 CCATTCCTTCGAGCAATTTTCT-GA
* * * **
121535 ACATTCCACGCTCGGGAAATCACATCATTTGGTCCAAATGGTTTGTCAAATTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
121600 GGTCTTTGAATTAAGAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTTTTGGCGGAACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * * * *
121663 GAAATTGTAAAACTTTTATGAGTTCTTTTATAACTTTGGCTCCTTAAAGAATTCAAGATGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
121728 TTCCTTCAAGCAATTTCCCGA
195 TTCCTTCGAGCAATTTTCTGA
* * * * * *
121749 AAATTTCATGCTCAGGAAATCACATCATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
** * *
121814 GGCCTTTGAA--AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGTCCAAACTTCC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-C
* * * * * * * *
121877 AAACTAGTCAAACTTTTACGAGTTCTTTTACAACATTGGTTCCTTAAATTCTTCAAGATGCTCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
121942 TTCCTTCGAGCAATTTT-TCGA
195 TTCCTTCGAGCAATTTTCT-GA
* * **
121963 ACTTTCCATGCTTGGGAAATCGCATCATTTACTCCAAATAGTTTGTCATTTTGTAAACAA-TTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
122027 -TTAATTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTAGTTTTTGGTCGAACTTT
66 GGT-ATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TT
* * *
122091 CAAACTTGTAAAAATTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
122156 ATTCCTTCGAGCAATTTT-TCGA
194 ATTCCTTCGAGCAATTTTCT-GA
* * * * *
122178 ACATTTCATGCTCGGGAAATCTCATCATTTGGTCCAAATAGTTTTTCATTTTGTAAATAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * * * * * *
122243 TGTATCTGAATTGAGAACTTATTAAAGTGAGAATTTTTTCTCTGTTGGATATTGGCTGAACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * * * * **
122308 GAACTTTTCAAACTTTTTCTAGTTTTTTTATAACTTTGGTTGCTTACAGTATTCAAGACGATTGA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
*
122373 TTCCTTCGAGCAATTTTTTGA
195 TTCCTTCGAGCAATTTTCTGA
* * ** * * * * *
122394 AAATTCCATGCT-TGGAAATTTCATTAGTTGATCGAAATAGTTTGTCATTTTGTAATCAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
122458 GGTCTTTGAATTAAAAATTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-C
* * * * * *
122523 GCACTAGTCCAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGATGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* *
122588 TTCATTTGAGCAATTTT-TCGA
195 TTCCTTCGAGCAATTTTCT-GA
* * * * *
122609 ATATTACATGCTCGGG--A--GCATCATTTGGCCCATATAGTTTGTCATTTTGTAATCAA-TTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
** * * * * * * *
122669 TTTATTTGAATTAAAAACTTATTTACATAATAATTTTTTCTCTCTTTGTTATTGGTCGAACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * * * * *
122734 GAACTTGTAAAACTTTTACTAGTTCTTTTATAATTTTGTTTCCTTAAAGTATACAACACGATCGA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
122799 TTCCTTTGAGCAATGTACTGA
195 TTCCTTCGAGCAATTTTCTGA
* * * *
122820 ACATTCCATGATCGGGAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTGAATAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * * *
122885 TGTCTTTGAATTAAAAACTTATTTACGTTAGAATTGTTTTTGTCTTAGTTCTTGGCCAAACTTTT
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* ** **
122950 GAAATTGTCAAACTTTTATAAGTTCTTTTATAACTTCAGTTCCTTAAAGTA-T--------TCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* *
123006 TTCCTTCGAGTAATTTTCCGA
195 TTCCTTCGAGCAATTTTCTGA
* * * * *
123027 ACATTCCATGCTCTGGAAATTGCATCATTTGATCCAAATAGTTTGTCATTTTCTAAACAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
123092 TGTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTCTATTGGTTCTTGCCCGAACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * *
123157 GAACTTATCAAACTTTTACGAGTTCTTTTATAA-TTTCGTTTCCTTCAAGTATTCAAGACGATCC
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGATCC
* * *
123221 ATTCCTTGGAACAATATTTC-AA
194 ATTCCTTCGAGCAAT-TTTCTGA
* *
123243 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTAAACCACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * ** * * *
123308 GGTCTTTAAATTAAAAACTTATTTAAATGAGAATTGTTTCTCT-TTGATTTTTGGCTGAACTTCC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-C
* * * * *
123372 GAACTTTTCTAAA-TTTTACGAGTT-TTTTAATAACTTCGATTTCTTAAAGTATTCATGACGATC
130 GAACTTGTC-AAACTTTTACGAGTTCTTTT-ATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* **
123435 CATTCCTTCCAATAATATTTC-GA
193 CATTCCTTCGAGCAAT-TTTCTGA
* * * * *
123458 ACATTCCATGGTCGGGATATCCCATCATTTGGTCCAAATAGTTTTTCATTTTATAAGA-AACTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAA-ACAACTTT
* * * *
123522 TGGTATTTGAATTAAAAACTTATTT-CTGAGAGAATTATTTCTCTCTTGGTTTTTGGTCGAACTT
65 TGGTATTTGAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
** * * * *
123586 ATAAACTAGTAAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAATGTATTCAAGACGATC
129 -CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* *
123651 CATTCCTTCGAGCAATTCTCCGA
193 CATTCCTTCGAGCAATTTTCTGA
* * * * * *
123674 ACATTCTC-TGCTCAGGAAATCGCATCATTTGCTCGAAATAGTTTTTCATTTTCTAAACAATTTT
1 ACATTC-CATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * *
123738 TTGTATTTGAATTAAAAACTTATTTAAGTCAGAATTCTTTCTCTGTTGGTTCTTGGCCGAACTTT
65 TGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TT
* * * * * *
123803 CGAACTTGTCAAACTTTTACGGGTTCTTTTGTAATTTTGTTTCCTAAAAGTATTCAAGACTATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
123868 ATTCCTTCGAGCAATTTTAC-GA
194 ATTCCTTCGAGCAATTTT-CTGA
* * *
123890 ACATTCCATGCTCTGGAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTAAACCACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
123955 GGTCTTTGAATTAAAAAACTTATTTACGTGAGAATTGTTTCTCTC-TAGTTTTTGGCTGAACTTC
66 GGTATTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-
* * * * * * * * *
124019 CGAACTTTTCAAAATTCTA-TAATT-TTTTATAACTTCGATCCCTTAAAGTATTCAAGATGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* **
124082 ATTCCTTCCAATAATTTT-TCGA
194 ATTCCTTCGAGCAATTTTCT-GA
** * * * * *
124104 ACATTCCATGGGCGGGATATCACATCATTTGGTACAAATAATTTTTCATTTTGTAAGA-AACTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAA-ACAACTTT
* * *
124168 TGGTATTTGAATTAAAAACTTATTTTCAG-GAGAATTGTTTCTCTCTTGGTTTTTGGTCGAACTT
65 TGGTATTTGAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * * * * *
124232 CCAAACTAGTAAAACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAATGTATTCAAGATGATC
129 -CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
*
124297 CATTCCTTCAAGCAATTTTCTGA
193 CATTCCTTCGAGCAATTTTCTGA
* * * *
124320 ACATTCCATGCTCGAGAAATTGCATCATTTGGTCCAAATAGTTTGTCATCTTGTAAACAACATTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
124385 GGTCTTTGAATTAAAAACCTATTTATGCGAGAATTG-TT-TCTCTTGGTTCTTGGCCGACCTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * * * * * * *
124448 GAAATTCTCAATCTTTTATGAGTTTTTTTATAAATTTGGTTCCTTAAAGTGTTCTAGACAATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* **
124513 CTCCTTCGAGCAATTTTCCAA
195 TTCCTTCGAGCAATTTTCTGA
* * * * * * *
124534 AAATTTCATGCTCAGGAAATCACATTATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * **
124599 TGTCTTTAAATTAAAAACTTATTTACGTGAGAATCGTTTCTCAATTGGTTCTTGGCCGAACTTCC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-C
* * ** *
124664 GAACTTGTCAAAATTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGCTCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
*
124729 CTCCTTCGAGCAATTTT-TCGA
195 TTCCTTCGAGCAATTTTCT-GA
* * *
124750 ACATTCCATGCTCAGGAAATCGCATCATTTGCTCCAAATAGTTTGTCATTTTGTAAACAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
124815 TGTATTTGAATT-AAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTT-TTTGCTCGAACTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC-CGAACTTC
* * * * * **
124878 AAAACTTGTAAAACTTTAATGAGTTATTTTATAAC-TTGGTTCCTTAAAGTATTCAAGTTGATCC
130 -GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
124942 ATTCCTTCGAGCAATTTTC-GTA
194 ATTCCTTCGAGCAATTTTCTG-A
** * *
124964 ACATTCCATGCTCAAGAAATTC-CATCATTTGGTTCAAATAGTTTGTCATTTAGTAAACAA-TTT
1 ACATTCCATGCTCGGGAAA-TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * ** *
125027 T-TTATTTGAATTAAAAACTTATTTAAGTGAGAATTATTTCTCTATTGGTTCTTATCTGAACTTC
65 TGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-
* * * * *
125091 CGAACTTTTCAAACTCTTACGAGTTCTTTTATAACTTTGGTTGCTTAAAGTATTCATGACGATCA
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
**
125156 ATTCCTTCGAGCAATTTTCCAA
194 ATTCCTTCGAGCAATTTTCTGA
* * * * * ** * * *
125178 AAATTTCATGCACAGGAAATCACATCATTTACTCCAAATAGTTTGTCATTTTGTAGATAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
125243 TGTATTTGAATTAAAAACTTATTTACGTGAGAATT-TATTCTCTTTTAGTTCTTGGACGAACTTT
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGT-TTCTCTCTTGGTTCTTGGCCGAAC-TT
* * * * **
125307 CGAACTTCTAAAACTTTTACGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGACTTTCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* * * *
125372 ATTTCTTCGAGCAATGTACCGA
194 ATTCCTTCGAGCAATTTTCTGA
* *
125394 ACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTGAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * ** * * *
125459 TGTCTTTGAATTAAAATTTTATTTACGTGAGAATTGTTTTTGTCTTAGTTCTTGGCC-AACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * *
125523 GAAATTGTCAAACTTTTATGAGTTCTTTTCTAACTTTGGTTCCTTAAAGTATTCAAGACGATTCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* *
125588 TTCCTTCTAGCAATTTTTTGA
195 TTCCTTCGAGCAATTTTCTGA
* * *
125609 ACATTCCATGCTCGGGAAATCGCATCATTTGGCCCAAATAGTTTGTCATTTTGTAATCAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * ** *
125674 TGTATTTGATTTGAAAACTTATTTA--T--G-TTTGTTTCTCTCCTT-ATTCTTGGTTGGACTTT
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGCCGAAC-TT
* * * * * *
125733 CGAACTTGTCAAGCTTTTATGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAATACAATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* **
125798 ATTCCTTCGAGCAATTTACCAA
194 ATTCCTTCGAGCAATTTTCTGA
* * **
125820 ACATTCCATGCTCGGAAAATCACATCATTTGCACCAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
125885 GGTATTTGAATTAAAAACTTA-TT-CATCAAAATTGTTTCTCTCTTGGTTATTAGCCGAATTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-CTTC
* * * * *
125948 GAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTGCTTAAGAGTATTAAAGATGATTC
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA-AGTATTCAAGACGATCC
*
126013 ATTCCTTCGAGCAATTTT-TCAA
194 ATTCCTTCGAGCAATTTTCT-GA
* * ** ****
126035 ACATTCCATGCTCGGAAAATCGCATCATTTAGTCCAAATAGTTTGTCAAATT-TAAA-AAAAAAT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
126098 --TATTTGAATTAAAAAAATTATTTACATGAGAATTGTTTCTCTATTGGTTCTTGACCGAATTTT
66 GGTATTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-CTT
* * * * * * * * ** *
126161 CGATCTTTTCAAAGTTTTTCTAGTTCTTGTATAACTTTGGCTACTTAAAGTATGAAAGACAATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
*
126226 ATTCCTTCCAGCAATTTT-TCGA
194 ATTCCTTCGAGCAATTTTCT-GA
** * * **
126248 ACATTCCATGCTCGAAAAATCGCATCATTTAGACCAAATAGTTTGTCAAATTGTAAA-AA-TATT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACT-TT
* * * * *
126311 TTGTATTTGAATTAAAAAGTTATCTACATGAGAATCGTTTCTCTCTTGGTTCTTGGCCGAACTTT
65 TGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TT
* ** * * * * *
126376 TGAGTTTGTCAGACTTTTACGAGGTCTTTTATAATTTTGGTTCCTTGAAGTGTTCAAGACGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* **
126441 ATTCTTTCGAGCAATTTTCCAA
194 ATTCCTTCGAGCAATTTTCTGA
* * * * *
126463 ACATTCCATGCTCCGGAAATTGCATTATTTGGTCCAAATAGTTTGTCATTTTCTAAACAACATTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * *
126528 GGTCTTTGAATTAAAAACTTATTTACATCAGAATTGTTTCTCTCGTGGTTCTT-GCTAGAACATC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC-CGAAC-TT
* * * * * * *
126592 CAAACTTATCAAACTTTTATC-AGTTTTTTTATGACTTTGGTTCCTTAAATTTTTAAAGACGATC
129 CGAACTTGTCAAACTTTTA-CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* *
126656 CATTCCTTCCAGTAATTTTCCTGA
193 CATTCCTTCGAGCAATTTT-CTGA
*** * *
126680 A-ATTCCATGCTCAAAAAATCGCATTATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
126744 GGTCTGTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-C
* * * * *
126809 GAACTTGTCAAACTTTTATGA-TTTTTTTATTACTTCGGTTCCTTAAAGTATTCAAGACGATTCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* **
126873 TTCTTTCGAGCAA-TTTCCAA
195 TTCCTTCGAGCAATTTTCTGA
* * *
126893 ACATTCCATTCTCAGGAAATCGCATCATTTGG-CCAAATAGTTTGTCATTTTGTAAGCAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
126957 TGTGTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-C------CTT----GAATTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-CTTC
* * **
127011 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCATTAAAGTATTCAAGATAATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
*
127076 TT-CTTCAAGCAATTTT-TCGA
195 TTCCTTCGAGCAATTTTCT-GA
* * * *
127096 AAATTCCATGCTCGGGAAATTGCATTATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
127161 GGTCTTAGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-C
* * * *
127226 GAACTAGTCCAACTTTTACGAGTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
127291 TTCATCCGAGCAATTTTCCGA
195 TTCCTTCGAGCAATTTTCTGA
* ** * * *
127312 ATATTCTGTGCTCGGGAAATCGCGTCATTTGGTCCAAATAGTTTGTCATTTTGTAATCAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
127377 TGTATTTGAATTAAAAGCTTATTTATGTGAGAATT-TTTCTCTCTTGGTTCTTGGCC-AATCTTT
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAA-C-TT
* * * * *
127440 CGAACTTGTAAAACTTTTACGAGTTCATTTATAATTTTGTTTCCTTAAAGTATTCAAGATGATCC
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* *
127505 ATTCCTTCGAGCAATGTACTGA
194 ATTCCTTCGAGCAATTTTCTGA
* * * * *
127527 ACATTCAATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTAGTCATTTTGTCAACAAATTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * ** *
127592 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTGTCTTAGTTCTTAACCAAACTTCC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT-C
* * * *
127657 GAAATTGTCAAAC-TTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAAAAGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
127721 TT-CTTCGAGCAATTTT-TCGA
195 TTCCTTCGAGCAATTTTCT-GA
** ** * *
127741 ACATTCCATGCTCGAAAAATCTTATCATTTGGTCCAAATAGTTTGTCATTTTGTAATCAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
** * *
127806 TATATTTGAATTAAAAACTTATTTACGTGCGAATTGTTTCTCT-TCTGGTTCTTGGCTGAACTTT
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCCGAAC-TT
* * * * * * * * *
127870 AGAACTTGTCAAGCTTTTAGGAGTTTTTTTAT-AGTTTCGTTTCATTAAAGTATTCAAAACGATA
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GGTTCCTTAAAGTATTCAAGACGATC
* **
127934 CATTCCTTCGAGCAATTTACCAA
193 CATTCCTTCGAGCAATTTTCTGA
* ** ** * * *
127957 ACATTCCATTCTCGGGAAATTACATCATTTGCACCAAATTGTTTGTCATTTTGTAAATAAATTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
128022 GGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAATTTCT
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTC-
* * * * * * **
128087 GATCTTTTTAAACTTTTACGAGTTCTTCTATAACTTTGGTTGCTTAAAGTATTAAAGACGATTGA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* *
128152 TTCATTCGAGCAATTTT-TAAAA
195 TTCCTTCGAGCAATTTTCT--GA
** * * * * ** * ***
128174 ACATTCCATGCTCGAAAAATAGTATCATTTAGTCTAAATAGTTTGTCAAATTGTAAAAAAAAATT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
128239 -GTATTTGAATTAAAAAGTTATTTACGTGATAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * * * *
128303 GAACTTGTCATATTTTTACGTGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGACGATCAA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
*
128368 TTCCTTCGAGCAATTTTTTGA
195 TTCCTTCGAGCAATTTTCTGA
* * *
128389 ACATTCCATGCTC-GGAAACCGCATCATTTGGTCCAAATAGTTTGTCATTTTGCAATCAATCTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA-CTTT
* *
128453 T-GTATTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGGTCTTGGCCGAACTTT
65 TGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TT
* * * * * * * *
128517 AGAACTTGTCAAGCTTTTATGAATTTTTTTATAACTTCT-ATTCCTTAAAGTATTCATGACGATA
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACGATC
* *
128581 CATTACTGT-GAGCAATTTTTTGA
193 CATTCCT-TCGAGCAATTTTCTGA
* * * * * * *
128604 ACATTCCATGCTCTGGAAATCGCGTAATTTGGTACAAATAGTTTGTCATTTTGTAGACTATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
128669 TGTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTCTGTTGGTTCTTGGTCGAACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * ** * **
128734 GAACTTGTAAAACTTTTACGAGTTCTTTTATAATTTTATTTCCTTAAAGTTTTCAAGGTGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
*
128799 TTCCTTCGAGCAATGTATC-GA
195 TTCCTTCGAGCAAT-TTTCTGA
* * * ** * *
128820 GCATTCCATGTTCGAGAAATCGCATCATTTCATCCAAATAGTTTGTCATTTTGTGAGCAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * * *
128885 TGTCTTTTAATTAAAAATTTATTTACGTGAGAATTGTTTTTGTCTTAGTTCTTGGCCAAACTTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAAC-TTC
* * * * *
128950 GAAATTGTCAAACTTTTATGTGCTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
130 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* *
129015 TTCCTTCGAGCAATTTTTTAA
195 TTCCTTCGAGCAATTTTCTGA
* * *
129036 ACATTCCATGCTCGGGAAATTGCATTATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTG
1 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
129101 GGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTCGTGGTTCTT-GCTCGAACTTC
66 GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGC-CGAACTT-
* * * * *
129165 CGAACTTGTCAAACTTCTATGAGTTCTTTTTTAACTTTGGTTGCTAAAAGTATTCAAGACGAT
129 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGAT
129228 TGATCGGCCT
Statistics
Matches: 7299, Mismatches: 1282, Indels: 374
0.82 0.14 0.04
Matches are distributed among these distances:
202 32 0.00
203 69 0.01
204 68 0.01
205 1 0.00
206 5 0.00
207 169 0.02
208 1 0.00
210 17 0.00
211 311 0.04
212 219 0.03
213 316 0.04
214 1237 0.17
215 1664 0.23
216 3055 0.42
217 135 0.02
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (215 bp):
ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTT
GGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCG
AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCAT
TCCTTCGAGCAATTTTCTGA
Found at i:122520 original size:431 final size:432
Alignment explanation
Indices: 120245--129227 Score: 9489
Period size: 431 Copynumber: 20.9 Consensus size: 432
120235 TTCCTTAATG
* * * * * *
120245 ACATTCAACGCTCGGGAAATCACATCATTTGGTCCAAATGGTTTGTCATTTTGTAAACAAATTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
120310 GGTCTTTGAATTAAGAACTTAATTATGTGAGAATTG-TT-TCTCTTGGTTTTTGGCCGTACTTTC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * *
120373 GAAATTGTAAAACTTTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTTAAGACGATCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
120438 TTTCTTCAAGCAATTTTTCGAAAATTCCATGCTCAGGAAATCACATCATTTGATCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * * * *
120503 GTCATTTTGTTAACAACTTTTGGTCTTTGAATTTAAAACTTATTTACA-TGAGAATTGTTTCTCT
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTA-AGTGAGAATTGTTTCTCT
* * * * * **
120567 CTTGGTTCTTGGCCGAAC-TTCAGAACTTGTCAAAATTTTACAAGTTCTTTTATTACTTCAGTTC
325 CTTGGTTCTTGGCTGAACTTTC-GAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * *
120631 CTTAAAATATTCAAGATGCTCCATTCCTTCGAGCAA-TTTTCTGA
389 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GA
* * * * *
120675 ACATTCCATGCTCAGGAAATCGCATCATTTGCTCGAAATAGTTTGTCATTTTCTAAACAATTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * *
120740 TGTATTTGAGTTAAAAACTTATTTTA-GTGAGAATTCTTTCTCTGTAT-GTTATTGGCTGAACTT
66 GGTCTTTGAATTAAAAACTTA-TTTACGTGAGAATTGTTTCTCTCT-TGGTTCTTGGCCGAACTT
* * * * * *
120803 TCAAACTTGTCAAACTTTTACGAGCTCTTTTATAAATTCGTTTCCTTAAAGTATTCAAAACGATC
129 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* * * * *
120868 CATTCCTTCAAGCAATTTTCCAAACATTCCATGCTCGGGAAATCACATCATTTGATCCAAATAGT
194 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGT
* * * * *
120933 TTGTCATTTTCTAAACAGTGTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTT
259 TTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
* * * * * * * *
120998 TGTTGGTTCGTAGCCGAACTTTCAAACTTGTTAAACTTTTACGAGTTCTTTTATAA-TTTCGTTT
324 TCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTT-GGTT
* * *
121062 TCTTAAAGTATTCAAGACGATCCATTCCTTCGAGTAATTTTTTGA
388 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
** * * * * *
121107 ACATTCCATGCTCGAAAAATTGCATC----GGTCCAATTAGTTTGTCATTTTGTAAACCAGTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
121168 GGTCTTTGAGTTAAAAAACTTATTTATGTGAGAATTGTTTCTCTC-TAGTTTTTGGCTGAACTTT
66 GGTCTTTGAATT-AAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * * *
121232 TGAACTTTTCAAAATTTTACGAGTTTTTTTATAACTTCGGTTTCTTAAAGTATTCAAGACGATCC
130 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* * *
121297 ATTCCTTCCAGCAATTTTTCGAACATTCCATAG-TCGGGATATCGAATCATTTGGTCCAAATAGT
195 ATTCCTTCGAGCAATTTTTCGAACATTCCAT-GCTCGGGAAATCGCATCATTTGGTCCAAATAGT
* * * * * *
121361 TTTTCATTTTGTAAGA-AACTTTTGGTATTTGAATTAAAATCTTATTT-CGGGAGAATTGTTTCT
259 TTGTCATTTTGTAA-ACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCT
* ** * * * *
121424 CTTTTTATTTTTGG-TCGAAC-TTCTAAACTAGTCAAAATTTTTACGAGTTCTTTTATAACTTTG
323 CTCTTGGTTCTTGGCT-GAACTTTC-GAACTTGTCAAACTTTTT-CGAGTTCTTTTATAACTTTG
* * * * **
121487 GTTTCTTAATGTATTCAAGATGATCTATTCCTTCGAGCAATTTTTATA
385 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * **
121535 ACATTCCACGCTCGGGAAATCACATCATTTGGTCCAAATGGTTTGTCAAATTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
121600 GGTCTTTGAATTAAGAACTTATTTACGTGAGAATTG-TT-TCTCTTGGTTTTTGGCGGAACTTTC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * * * *
121663 GAAATTGTAAAACTTTTATGAGTTCTTTTATAACTTTGGCTCCTTAAAGAATTCAAGATGATCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* ** * * * * *
121728 TTCCTTCAAGCAATTTCCCGAAAATTTCATGCTCAGGAAATCACATCATTTGATCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * * ** *
121793 GTCATTTTGTTAACAACTTTTGGCCTTTGAA--AAAAACTTATTTACGTGAGAATTGTTTCTCTC
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTC
* ** * * * * * *
121856 TTGGTTCTTGTCCAAACTTCCAAACTAGTCAAACTTTTACGAGTTCTTTTACAACATTGGTTCCT
326 TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCT
* * * *
121921 TAAATTCTTCAAGATGCTCCATTCCTTCGAGCAATTTTTCGA
391 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* *
121963 ACTTTCCATGCTTGGGAAATCGCATCATTT-ACTCCAAATAGTTTGTCATTTTGTAAACAA-TTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGA-TCCAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * *
122026 T-TTAATTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTAGTTTTTGGTCGAACTT
65 TGGT-CTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * *
122090 TCAAACTTGTAAAAATTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
129 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* *
122155 CATTCCTTCGAGCAATTTTTCGAACATTTCATGCTCGGGAAATCTCATCATTTGGTCCAAATAGT
194 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGT
* * * * * * *
122220 TTTTCATTTTGTAAATAATTTTTTGTATCTGAATTGAGAACTTATTAAAGTGAGAATTTTTTCTC
259 TTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTC
* * * * * * *
122285 TGTTGGATATTGGCTGAACTTTCGAACTTTTCAAACTTTTTCTAGTTTTTTTATAACTTTGGTTG
324 TCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* ** *
122350 CTTACAGTATTCAAGACGATTGATTCCTTCGAGCAATTTTTTGA
389 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * ** * * * *
122394 AAATTCCATGCT-TGGAAATTTCATTAGTTGATCGAAATAGTTTGTCATTTTGTAATCAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * *
122458 GGTCTTTGAATTAAAAATTTATTTAGGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTCC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * * * *
122523 GCACTAGTCCAACTTTTACAAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGATGATCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * * *
122588 TTCATTTGAGCAATTTTTCGAATATTACATGCTCGGG--A--GCATCATTTGGCCCATATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * * *
122649 GTCATTTTGTAATCAATTTTTT-TATTTGAATTAAAAACTTATTTACA-TAATAATTTTTTCTCT
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTA-AGTGAGAATTGTTTCTCT
* * * * * * *
122712 CTTTGTTATTGG-TCGAACTTTCGAACTTGTAAAACTTTTACTAGTTCTTTTATAATTTTGTTTC
325 CTTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTC
* * * * * *
122776 CTTAAAGTATACAACACGATCGATTCCTTTGAGCAA-TGTACTGA
389 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GA
* * * * *
122820 ACATTCCATGATCGGGAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTGAATAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * *
122885 TGTCTTTGAATTAAAAACTTATTTACGTTAGAATTGTTTTTGTCTTAGTTCTTGGCCAAACTTTT
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* ** **
122950 GAAATTGTCAAACTTTTATAAGTTCTTTTATAACTTCAGTTCCTTAAAGTA-T--------TCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
123006 TTCCTTCGAGTAATTTTCCGAACATTCCATGCTCTGGAAATTGCATCATTTGATCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * *
123071 GTCATTTTCTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCTCTA
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTC
* * * * *
123136 TTGGTTCTTGCCCGAACTTTCGAACTTATCAAACTTTTACGAGTTCTTTTATAA-TTTCGTTTCC
326 TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTT-GGTTCC
* * * * *
123200 TTCAAGTATTCAAGACGATCCATTCCTTGGAACAATATTTCAA
390 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * *
123243 ACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAATTAGTTTGTCATTTTGTAAACCACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* ** * * * *
123308 GGTCTTTAAATTAAAAACTTATTTAAATGAGAATTGTTTCTCT-TTGATTTTTGGCTGAACTTCC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * * *
123372 GAACTTTTCTAAA-TTTTACGAGTT-TTTTAATAACTTCGATTTCTTAAAGTATTCATGACGATC
131 GAACTTGTC-AAACTTTTACGAGTTCTTTT-ATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* ** * * * *
123435 CATTCCTTCCAATAATATTTCGAACATTCCATGGTCGGGATATCCCATCATTTGGTCCAAATAGT
194 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGT
* * * * ** * *
123500 TTTTCATTTTATAAGA-AACTTTTGGTATTTGAATTAAAAACTTATTTCTGAGAGAATTATTTCT
259 TTGTCATTTTGTAA-ACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCT
* * * *
123564 CTCTTGGTTTTTGG-TCGAACTTAT-AAACTAGTAAAACTTTTAT-GAGTTCTTTTATAACTTTG
323 CTCTTGGTTCTTGGCT-GAACTT-TCGAACTTGTCAAACTTTT-TCGAGTTCTTTTATAACTTTG
* * *
123626 GTTCCTTAATGTATTCAAGACGATCCATTCCTTCGAGCAATTCTCCGA
385 GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * * *
123674 ACATTCTC-TGCTCAGGAAATCGCATCATTTGCTCGAAATAGTTTTTCATTTTCTAAACAATTTT
1 ACATTC-CATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * *
123738 TTGTATTTGAATTAAAAACTTATTTAAGTCAGAATTCTTTCTCTGTTGGTTCTTGGCCGAACTTT
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * * *
123803 CGAACTTGTCAAACTTTTACGGGTTCTTTTGTAATTTTGTTTCCTAAAAGTATTCAAGACTATCC
130 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* * *
123868 ATTCCTTCGAGCAATTTTACGAACATTCCATGCTCTGGAAATCGCATCATTTGGTCCAATTAGTT
195 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTT
* * * * *
123933 TGTCATTTTGTAAACCACTTTTGGTCTTTGAATTAAAAAACTTATTTACGTGAGAATTGTTTCTC
260 TGTCATTTTGTAAACAATTTTTTGTATTTGAATT-AAAAACTTATTTAAGTGAGAATTGTTTCTC
* * * * * * * * * *
123998 TC-TAGTTTTTGGCTGAACTTCCGAACTTTTCAAAATTCTAT--AATT-TTTTATAACTTCGATC
324 TCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTT-TTTCGAGTTCTTTTATAACTTTGGTT
* * **
124059 CCTTAAAGTATTCAAGATGATCCATTCCTTCCAATAATTTTTCGA
388 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
** * * * * * *
124104 ACATTCCATGGGCGGGATATCACATCATTTGGTACAAATAATTTTTCATTTTGTAAGA-AACTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAA-ACAACTTT
* * * *
124168 TGGTATTTGAATTAAAAACTTATTTTCAG-GAGAATTGTTTCTCTCTTGGTTTTTGGTCGAACTT
65 TGGTCTTTGAATTAAAAACTTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* * * * * * *
124232 CCAAACTAGTAAAACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAATGTATTCAAGATGATC
129 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* * *
124297 CATTCCTTCAAGCAA-TTTTCTGAACATTCCATGCTCGAGAAATTGCATCATTTGGTCCAAATAG
194 CATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAG
* ** * * * * *
124361 TTTGTCATCTTGTAAACAACATTTGGTCTTTGAATTAAAAACCTATTTATGCGAGAATTG-TT-T
258 TTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCT
* * * * * * *
124424 CTCTTGGTTCTTGGCCGACCTTTCGAAATTCTCAATCTTTTAT-GAGTTTTTTTATAAATTTGGT
323 CTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTT-TCGAGTTCTTTTATAACTTTGGT
* * * * * *
124488 TCCTTAAAGTGTTCTAGACAATCCACTCCTTCGAGCAATTTTCCAA
387 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * * *
124534 AAATTTCATGCTCAGGAAATCACATTATTTGATCCAAATAGTTTGTCATTTTGTTAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * ** *
124599 TGTCTTTAAATTAAAAACTTATTTACGTGAGAATCGTTTCTCAATTGGTTCTTGGCCGAACTTCC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * ** *
124664 GAACTTGTCAAAATTTTATGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGCTCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
124729 CTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATCGCATCATTTGCTCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
124794 GTCATTTTGTAAACAATTTTTTGTATTTGAATT-AAAACTTATTTACA-TGAGAATTGTTTCTCT
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTA-AGTGAGAATTGTTTCTCT
* * * * *
124857 CTTGGTT-TTTGCTCGAAC-TTCAAAACTTGTAAAACTTTAAT-GAGTTATTTTATAAC-TTGGT
325 CTTGGTTCTTGGCT-GAACTTTC-GAACTTGTCAAACTTT-TTCGAGTTCTTTTATAACTTTGGT
**
124918 TCCTTAAAGTATTCAAGTTGATCCATTCCTTCGAGCAA-TTTTCGTA
387 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCG-A
** * * *
124964 ACATTCCATGCTCAAGAAATTC-CATCATTTGGTTCAAATAGTTTGTCATTTAGTAAACAA-TTT
1 ACATTCCATGCTCGGGAAA-TCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * ** * *
125027 T-TTATTTGAATTAAAAACTTATTTAAGTGAGAATTATTTCTCTATTGGTTCTTATCTGAACTTC
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * *
125091 CGAACTTTTCAAACTCTTACGAGTTCTTTTATAACTTTGGTTGCTTAAAGTATTCATGACGATCA
130 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * * **
125156 ATTCCTTCGAGCAATTTTCCAAAAATTTCATGCACAGGAAATCACATCATTTACTCCAAATAGTT
195 ATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTT
* * *
125221 TGTCATTTTGTAGATAATTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATT-TATTCTC
260 TGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGT-TTCTC
* * * * * * *
125285 TTTTAGTTCTTGGAC-GAACTTTCGAACTTCTAAAACTTTTACGAGTTCTTTTATAATTTTGTTT
324 TCTTGGTTCTTGG-CTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTT
** * * **
125349 CCTTAAAGTATTCAAGACTTTCCATTTCTTCGAGCAATGTACCGA
388 CCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * *
125394 ACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTGAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* ** * * *
125459 TGTCTTTGAATTAAAATTTTATTTACGTGAGAATTGTTTTTGTCTTAGTTCTTGGCC-AACTTTC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * *
125523 GAAATTGTCAAACTTTTATGAGTTCTTTTCTAACTTTGGTTCCTTAAAGTATTCAAGACGATTCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * *
125588 TTCCTTCTAGCAATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTTGGCCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * * *
125653 GTCATTTTGTAATCAATTTTTTGTATTTGATTTGAAAACTTATTT-A-T--G-TTTGTTTCTCTC
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCT-
* * * * * *
125713 CTT-ATTCTTGGTTGGACTTTCGAACTTGTCAAGCTTTTAT-GAGTTCTTTTATAATTTTGTTTC
325 CTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTT-TCGAGTTCTTTTATAACTTTGGTTC
* * ** *
125776 CTTAAAGTATTCAATACAATCCATTCCTTCGAGCAATTTACCAA
389 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* *
125820 ACATTCCATGCTCGGAAAATCACATCATTTGCA-CCAAATAGTTTGTCATTTTGTAAACAACTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTG-ATCCAAATAGTTTGTCATTTTGTAAACAACTTT
* * * * * * *
125884 TGGTATTTGAATTAAAAACTTA-TT-CATCAAAATTGTTTCTCTCTTGGTTATTAGCCGAATTTT
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * *
125947 CGAACTTTTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTGCTTAAGAGTATTAAAGATGATT
130 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAA-AGTATTCAAGACGATC
* * *
126012 CATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGAAAATCGCATCATTTAGTCCAAATAGT
194 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGT
** **** *
126077 TTGTCAAATT-TAAA-AA-AAAAT-TATTTGAATTAAAAAAATTATTTACA-TGAGAATTGTTTC
259 TTGTCATTTTGTAAACAATTTTTTGTATTTGAATT-AAAAACTTATTTA-AGTGAGAATTGTTTC
* * * * * * * * * *
126137 TCTATTGGTTCTTGACCGAATTTTCGATCTTTTCAAAGTTTTTCTAGTTCTTGTATAACTTTGGC
322 TCTCTTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGT
* ** * *
126202 TACTTAAAGTATGAAAGACAATCCATTCCTTCCAGCAATTTTTCGA
387 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
** **
126248 ACATTCCATGCTCGAAAAATCGCATCATTTAGA-CCAAATAGTTTGTCAAATTGTAAA-AA-TAT
1 ACATTCCATGCTCGGGAAATCGCATCATTT-GATCCAAATAGTTTGTCATTTTGTAAACAACT-T
* * * * * *
126310 TTTGTATTTGAATTAAAAAGTTATCTACATGAGAATCGTTTCTCTCTTGGTTCTTGGCCGAACTT
64 TTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTT
* ** * * * * *
126375 TTGAGTTTGTCAGACTTTTACGAGGTCTTTTATAATTTTGGTTCCTTGAAGTGTTCAAGACGATC
129 TCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* * * * * *
126440 CATTCTTTCGAGCAATTTTCCAAACATTCCATGCTCCGGAAATTGCATTATTTGGTCCAAATAGT
194 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGT
* ** * * *
126505 TTGTCATTTTCTAAACAACATTTGGTCTTTGAATTAAAAACTTATTTACA-TCAGAATTGTTTCT
259 TTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTA-AGTGAGAATTGTTTCT
* * * * * * *
126569 CTCGTGGTTCTT-GCTAGAACATCCAAACTTATCAAACTTTTATC-AGTTTTTTTATGACTTTGG
323 CTCTTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTTTT-TCGAGTTCTTTTATAACTTTGG
* * * * * *
126632 TTCCTTAAATTTTTAAAGACGATCCATTCCTTCCAGTAATTTTCCTGA
386 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GA
*** *
126680 A-ATTCCATGCTCAAAAAATCGCATTATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
126744 GGTCTGTGAATTAAAAACTTATTTACGTGAAAATTGTTTCTCTCTTGGTTCTTGGTCGAACTTCC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * * *
126809 GAACTTGTCAAACTTTTATGA-TTTTTTTATTACTTCGGTTCCTTAAAGTATTCAAGACGATTCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * *
126873 TTCTTTCGAGCAA-TTTCCAAACATTCCATTCTCAGGAAATCGCATCATTTGG-CCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * * * *
126936 GTCATTTTGTAAGCAACTTTTTGTGTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTCTC-C
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTC
* * * *
127000 ------C-T---TGAATTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTTGTTCAT
326 TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCT
** *
127055 TAAAGTATTCAAGATAATCCATT-CTTCAAGCAATTTTTCGA
391 TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * *
127096 AAATTCCATGCTCGGGAAATTGCATTATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * *
127161 GGTCTTAGAATTAAAAATTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCAAACTTCC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * *
127226 GAACTAGTCCAACTTTTACGAGTTATTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
* * * * ** *
127291 TTCATCCGAGCAATTTTCCGAATATTCTGTGCTCGGGAAATCGCGTCATTTGGTCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * *
127356 GTCATTTTGTAATCAATTTTTTGTATTTGAATTAAAAGCTTATTTATGTGAGAATT-TTTCTCTC
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTC
* * * * * *
127420 TTGGTTCTTGGC-CAATCTTTCGAACTTGTAAAACTTTTACGAGTTCATTTATAATTTTGTTTCC
326 TTGGTTCTTGGCTGAA-CTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCC
* * *
127484 TTAAAGTATTCAAGATGATCCATTCCTTCGAGCAA-TGTACTGA
390 TTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GA
* * * * * *
127527 ACATTCAATGCTCGGGAAATTGCATCATTTGGTCCAAATAGTTAGTCATTTTGTCAACAAATTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * ** * *
127592 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTGTCTTAGTTCTTAACCAAACTTCC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * *
127657 GAAATTGTCAAAC-TTTATGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAAAAGATCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
** **
127721 TT-CTTCGAGCAATTTTTCGAACATTCCATGCTCGAAAAATCTTATCATTTGGTCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* * * *
127785 GTCATTTTGTAATCAATTTTTTATATTTGAATTAAAAACTTATTTACGTGCGAATTGTTTCTCT-
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTC
* * ** * * *
127849 TCTGGTTCTTGGCTGAACTTTAGAACTTGTCAAGCTTTTAGGAGTTTTTTTAT-AGTTTCGTTTC
326 T-TGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTT-GGTTC
* * * ** *
127913 ATTAAAGTATTCAAAACGATACATTCCTTCGAGCAATTTACCAA
389 CTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* ** * * *
127957 ACATTCCATTCTCGGGAAATTACATCATTTGCA-CCAAATTGTTTGTCATTTTGTAAATAAATTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTG-ATCCAAATAGTTTGTCATTTTGTAAACAACTTT
* * *
128021 TGGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTCTTGGTTCTTGGCTGAA-TTT
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * * * *
128085 CTGATCTTTTTAAACTTTTACGAGTTCTTCTATAACTTTGGTTGCTTAAAGTATTAAAGACGATT
130 C-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATC
* * ** ** * * * *
128150 GATTCATTCGAGCAATTTTTAAAAACATTCCATGCTCGAAAAATAGTATCATTTAGTCTAAATAG
194 CATTCCTTCGAGCAATTTTT-CGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAG
** **** * * *
128215 TTTGTCAAATTGTAAA-AAAAAATTGTATTTGAATTAAAAAGTTATTTACGTGATAATTGTTTCT
258 TTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCT
* * * *
128279 CTCTTGGTTCTTGG-TCGAACTTTCGAACTTGTCATA-TTTTTACGTGTTCTTTTATAATTTTGT
323 CTCTTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTTTTT-CGAGTTCTTTTATAACTTTGG
* *
128342 TTCCTTAAAGTATTCAAGACGATCAATTCCTTCGAGCAATTTTTTGA
386 TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * *
128389 ACATTCCATGCTC-GGAAACCGCATCATTTGGTCCAAATAGTTTGTCATTTTGCAATCAATCTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAA-CTTT
* * *
128453 T-GTATTTGAATTAAAAACTTATTTATGTGAGAATTGTTTCTCTCTTGGGTCTTGGCCGAACTTT
65 TGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTT
* * * * * * * *
128517 AGAACTTGTCAAGCTTTTATGAATTTTTTTATAACTTCT-ATTCCTTAAAGTATTCATGACGATA
130 CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTT-TGGTTCCTTAAAGTATTCAAGACGATC
* * * * * *
128581 CATTACTGT-GAGCAATTTTTTGAACATTCCATGCTCTGGAAATCGCGTAATTTGGTACAAATAG
194 CATTCCT-TCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAG
* * *
128645 TTTGTCATTTTGTAGACTATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTCTTTCT
258 TTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCT
* * * * **
128710 CTGTTGGTTCTTGG-TCGAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTTATAATTTTATT
323 CTCTTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGT
* ** * *
128774 TCCTTAAAGTTTTCAAGGTGATCCATTCCTTCGAGCAATGTATCGA
387 TCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
* * * * * *
128820 GCATTCCATGTTCGAGAAATCGCATCATTTCATCCAAATAGTTTGTCATTTTGTGAGCAACTTTT
1 ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * * * *
128885 TGTCTTTTAATTAAAAATTTATTTACGTGAGAATTGTTTTTGTCTTAGTTCTTGGCCAAACTTTC
66 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
* * * * *
128950 GAAATTGTCAAACTTTTATGTGCTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCA
131 GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
** * *
129015 TTCCTTCGAGCAATTTTTTAAACATTCCATGCTCGGGAAATTGCATTATTTGGTCCAAATAGTTT
196 TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
* ** * * *
129080 GTCATTTTGTAAACAACTTTGGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTCTCTC
261 GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTC
* * * * *
129145 GTGGTTCTT-GCTCGAACTTCCGAACTTGTCAAACTTCTAT-GAGTTCTTTTTTAACTTTGGTTG
326 TTGGTTCTTGGCT-GAACTTTCGAACTTGTCAAACTT-TTTCGAGTTCTTTTATAACTTTGGTTC
*
129208 CTAAAAGTATTCAAGACGAT
389 CTTAAAGTATTCAAGACGAT
129228 TGATCGGCCT
Statistics
Matches: 7147, Mismatches: 1225, Indels: 360
0.82 0.14 0.04
Matches are distributed among these distances:
416 3 0.00
417 150 0.02
418 141 0.02
419 39 0.01
420 63 0.01
421 5 0.00
422 103 0.01
423 230 0.03
424 28 0.00
425 58 0.01
426 389 0.05
427 290 0.04
428 854 0.12
429 619 0.09
430 1451 0.20
431 1504 0.21
432 1120 0.16
433 100 0.01
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (432 bp):
ACATTCCATGCTCGGGAAATCGCATCATTTGATCCAAATAGTTTGTCATTTTGTAAACAACTTTT
GGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGCCGAACTTTC
GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGACGATCCA
TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATAGTTT
GTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTAAGTGAGAATTGTTTCTCTC
TTGGTTCTTGGCTGAACTTTCGAACTTGTCAAACTTTTTCGAGTTCTTTTATAACTTTGGTTCCT
TAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGA
Found at i:131168 original size:214 final size:214
Alignment explanation
Indices: 130723--131572 Score: 947
Period size: 216 Copynumber: 4.0 Consensus size: 214
130713 ATCAACGATT
* ** * *
130723 CATTCCTTCGAGCGATTACT-GAACATTCCATGCTTAGGG-AATCACATCATTCTGTCCAAATAG
1 CATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGGGAAATCGCATCATT-TGTCCAAATAG
* * *
130786 TTTGTCATTTTGTAAACAACTTTTGGTTTTTTACTTAAAAACTTATTTACGTGAGAATTGTTTCT
64 TTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTG-TTCT
* * *
130851 CTGTTGGTTCTTGGTCGAACTTCCAAACTTGTCAAACTTTTACGAGTTTTTTTATTACTATT-GT
128 CTTTTGGTTCTTGGTCGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACT-TTGGT
* *
130915 TCCTTAAAGTATTCAAGACGATT
192 TCCTTAAAGTATTCAAGACAATC
* * * *
130938 CATTCCTTCGAGCAATTTTTCGAACATTCCATTCTCGGGAAATCGCATCATTTGGCAAAATCGTT
1 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTCCAAATAGTT
* * * *
131003 TGTCATTTTGTAAGCAACTTTTTGTATTTGAATTAAAAAAATT-TTTAGGTGAGAATTGTTCTCT
66 TGTCATTTTGTAAACAACTTTTGGTATTTGAATT-AAAAACTTATTTACGTGAGAATTGTTCTCT
* * * * *
131067 TTTGTTTCTGGGTCGAATTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGATTCC
130 TTTGGTTCTTGGTCGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCC
*
131132 TTAAAGTATTTAAGACAATC
195 TTAAAGTATTCAAGACAATC
* * *
131152 CATTCCTTCAAGCAA-TTTTCTGAATATTCCATGCTCGGGCAATCGCATCATTTTGTCCAAATAG
1 CATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTCGGGAAATCGCATCA-TTTGTCCAAATAG
* * * * * *
131216 TTTGTCACTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACATGTGCATTATTTAT
64 TTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATT-GTTCT
* ** * * * * * * *
131281 CTCTTAATTATTGGTCGAACTTTCGAACTTGTCAGACTTTAACGTGTTCTTTTATAATTTTGGTT
128 CTTTTGGTTCTTGGTCGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTT
***
131346 CCTTAAAGTATTCAAGATGGTC
193 CCTTAAAGTATTCAAGACAATC
* * * * * *
131368 AATTCTTTCGAGCAATTTTTCGAACATTCCATTCTCGGGATATTG---CA---GT---ATTAGTT
1 CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTCCAAATAGTT
* *
131424 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTT-TCTG
66 TGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCT-
* ** *
131488 TCGTGGTTCTTGCCCGAACTTCCAAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTGGTTC
130 T-TTGGTTCTTGGTCGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTC
*
131553 CTAAAAGTATTCAAGACAAT
194 CTTAAAGTATTCAAGACAAT
131573 TGATCGACCA
Statistics
Matches: 528, Mismatches: 96, Indels: 31
0.81 0.15 0.05
Matches are distributed among these distances:
204 3 0.01
205 2 0.00
206 123 0.23
209 2 0.00
213 9 0.02
214 124 0.23
215 127 0.24
216 133 0.25
217 5 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (214 bp):
CATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGTCCAAATAGTT
TGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTCTCTT
TTGGTTCTTGGTCGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCT
TAAAGTATTCAAGACAATC
Found at i:133682 original size:215 final size:216
Alignment explanation
Indices: 133072--133920 Score: 1060
Period size: 215 Copynumber: 4.0 Consensus size: 216
133062 GCTATCAACG
* *
133072 ATCCATTCCTTCAAGCAATTTTCCGAACATTCCATGCTCGGGGAATCGCATCATTTGGTCCAAAT
1 ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAAT
* * * *
133137 AGTTTGTAATTTTGTAAATAGCTTTTGGTTTTTGAATTAAAAACTCATTTACGTGAGAATTGTTT
66 AGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * *
133202 CTCT-ATTGGTCTTGGTCGAAC-TTCAGAACTTGTCAAACTTTTACGAGTT-TTTATATTACTAT
131 CTCTCTTTGTTCTTGGTCGAACTTTC-GAACTTGTCAAACTTTTACGAGTTCTTT-TATAACT-T
*
133264 T-GTTCCTTAAA-TATTCATGACGA
193 TGGTTCCTTAAAGTATTCAAGAC-A
* * * *
133287 AT-CATTCCTTCGAGCAATATTTCGAACATTCCATTC-CTGGGAAATCGCATCATTTTGT--AAA
1 ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTC-GGGAAATCGCATCATTTGGTCCAAA
* * *
133348 TAGTTTGTCATTTTGTAAGCAACTTCTT-GTATTTGAATTAAAAACTTTTTTACGTGAGAATTGT
65 TAGTTTGTCATTTTGTAAACAACTT-TTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGT
* *
133412 TTCTCTCTTAT-TTCTTGGTCGAA-TTTCCAAACTTGCCAAACTTTTACGAGTTCTTTTATAACT
129 TTCTCTCTT-TGTTCTTGGTCGAACTTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACT
* *
133475 TTGATTCCTTAAAGTATTTAAGACA
192 TTGGTTCCTTAAAGTATTCAAGACA
* * * *
133500 ATCCATTCCTTCAAACAATTTTTCGAACATTCCATGCTCGGGGAATCGCATCATTTTGTCAAAAT
1 ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAAT
* * *
133565 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTTATTTACGTGA-AATCGTTT
66 AGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * *
133629 CTCTCTTTGTTCTTGGTCGAACTTTTGAACTTGTCAAACTTTAACGTGTTCTTTTATAATTTTGG
131 CTCTCTTTGTTCTTGGTCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
*
133694 TTCCTTAAAGTATTCAAGACG
196 TTCCTTAAAGTATTCAAGACA
* ** * * * * *
133715 GTATATTTCTTCGAGCAATTTTTCAAACATTCCATGCTCGGGAAATTGCATTATTTGGTCCAAAT
1 ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAAT
* * *
133780 AGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTATAAACTTATTTATGTAAGAATTGTTT
66 AGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * **
133845 CTCTCCTGGTTCTT-GCCAGAACATTCGAACTTGTCAAACTTTTTTGAGTTCTTTTATAACTTTG
131 CTCTCTTTGTTCTTGGTC-GAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTG
*
133909 GTTCCTAAAAGT
195 GTTCCTTAAAGT
133921 GTACAAGATG
Statistics
Matches: 547, Mismatches: 69, Indels: 35
0.84 0.11 0.05
Matches are distributed among these distances:
212 65 0.12
213 57 0.10
214 111 0.20
215 189 0.35
216 125 0.23
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
ATCCATTCCTTCAAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAAT
AGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
CTCTCTTTGTTCTTGGTCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
TTCCTTAAAGTATTCAAGACA
Found at i:135831 original size:216 final size:216
Alignment explanation
Indices: 135392--137419 Score: 2605
Period size: 216 Copynumber: 9.4 Consensus size: 216
135382 AGAAAATAGG
* *
135392 TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTC-GGAGAATCGCATCAATTGGTCCAAAT
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGA-AATCGCATCATTTGGTCCAAAT
* * * ** *
135456 AGTTTGTCATTTTGTAAACAA-ATTTTATCTTTGAACCAAAAACTTATTTACGCGAGAATTGTTT
65 AGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
*
135520 CTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTTGG
130 CTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
135585 TTCCTTAAAGTATTCAAGACGA
195 TTCCTTAAAGTATTCAAGACGA
*
135607 TCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
* * * * *
135672 GTTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACATATTTAAGTGATAATTCTTTC
66 GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * *
135737 TCTGTTAGTTCTTGGCTGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTGTTATAA-TTTCGT
131 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTT-GG
*
135801 TTCCTTAAAGTATTCAAGAAGA
195 TTCCTTAAAGTATTCAAGACGA
* * * *
135823 TTCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGAAAATTGCATCATTTGGTCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
* * * *
135888 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC
66 GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
135953 TCTC-TGGTTCTTGGCCAAACTTCCAAACTTTTCAAAATTTTACGAGTTCTTTTATAACTTTGGT
131 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
136017 TCCTTAAAGTATTCAAGACGA
196 TCCTTAAAGTATTCAAGACGA
* * ** * *
136038 CCCATTCCTTCGAGCAATTTTTCGAATATTCCATGCAT-AAGAAATCACGTCATTTGGTCCAAAT
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC-TCGGGAAATCGCATCATTTGGTCCAAAT
* * * * *
136102 AGTTTGTCATTTTGTAATCAATTTTTTGTTTTTGAATTAAAAACTAATTTACGTGA-AAATGTTT
65 AGTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTG-TT
* * * * *
136166 TCACTCTTGGTTCTTGGCCAAACTTTCGAACTTGTAAAACTTTTACGAGTTCTTTTATAATTTTA
129 TCTCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTG
* * * **
136231 TTTCCTTAAATTTTTCAAGGTGA
194 GTTCCTTAAAGTATTCAAGACGA
* * * * **
136254 TCCATTCCTTCGAGCAATATATCGAGCATTCCATGCTCGAGAAATCGCATCATTTCATCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
* * * * *
136319 GTTTGTCATTTTGTGAGCAACTTTTTGTCTTTTAATTAAAAACTTATTTACGTGAGAATTGTTTT
66 GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * * *
136384 TGTCTTAGTTCTTAGCCAAACTTTCAAAATTGTCAAACTTTTATGAGTTC-TTTATAACTTTGGT
131 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
136448 TCCTTAAAGTATTCAAGACGA
196 TCCTTAAAGTATTCAAGACGA
* * * * * * * *
136469 TCCATTCCTTTGAGAAATTTTTTGAATATTCCATGCTCAGAAAATTGCATCATTAGGTCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
* * *
136534 GTTTGTCATTTTGTAATCAATTTTTTGTAATTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
66 GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * * * *
136599 TATTTTAGTTCTTGGCCGAACTTTCGAGCTTGTCAAGCTTTTACAAGTTCTTTTATAATTTTGTT
131 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* *
136664 TCATTAAAGTATTCAAGATGA
196 TCCTTAAAGTATTCAAGACGA
* ** * * **
136685 TCCATTCCTTCAAGCAATTTACCAAACATTCCATGCTCGGGAAATCTCATCATTTGCACCAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
* *
136750 GTTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTT-
66 GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
136814 TCTCTTGATTCTTGGCCGAATTTTCGATCTTTTCAAACTTTTACGAGTTCTTCTATAACTTTGGT
131 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* *
136879 TGCTTAAAGTATTAAAGACGA
196 TCCTTAAAGTATTCAAGACGA
* ** * *
136900 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCGAAAAATCGCATCATTTAGTCTAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
** * **** *
136965 GTTTGTCAAATTGTAAAAAAAAAATTGTATTTGAATTAAAAAGTTATTTACGTGAGAATTGTTTC
66 GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * *
137030 TCTCTTCGTTCTTGGCCGAACTTTCAAACTTGTCAGACTTTTACGTGTTCTTTTATAATTTTGGT
131 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
137095 TCCTTAAAGTATTCAAGACGA
196 TCCTTAAAGTATTCAAGACGA
* * * * *
137116 TTCATTCCTTCGAGCAATTTTTCCAACATTCCATGCTCGAGAAATTGCATTATTTGGTCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
* * *
137181 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTTC
66 GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * * * *
137246 TCTCGTGGTTCTTGCCCAAACTTCCGAACTTATCAAACTTTTATGAGTTCTTTTATAACTTTGGT
131 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* *
137311 TTCTAAAAGTATTCAAGACGA
196 TCCTTAAAGTATTCAAGACGA
* * * * *
137332 TCCATTCATTTGAGCAATTTTTTGAACATTCCATTCTCGGGGAATCGCATCATTTGGTCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
*
137397 GTTTGTCATTTTGCAAACAACTT
66 GTTTGTCATTTTGTAAACAACTT
137420 CTGGTTTTTG
Statistics
Matches: 1545, Mismatches: 257, Indels: 21
0.85 0.14 0.01
Matches are distributed among these distances:
214 4 0.00
215 612 0.40
216 925 0.60
217 4 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCCAAATA
GTTTGTCATTTTGTAAACAACTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
TCCTTAAAGTATTCAAGACGA
Found at i:136200 original size:431 final size:432
Alignment explanation
Indices: 135392--137416 Score: 2699
Period size: 431 Copynumber: 4.7 Consensus size: 432
135382 AGAAAATAGG
* * *
135392 TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGAGAATCGCATCAATTGGTCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGAAAATTGCATCATTTGGTCCAAATA
* * ** *
135457 GTTTGTCATTTTGTAAACAAATTTT-ATCTTTGAACCAAAAACTTATTTACGCGAGAATTGTTTC
66 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* *
135521 TCTCTTGGTTCTTGGCCGAACTTTCGAACTTGTCAAACTTTGACGAGTTCTTTTATAACTTTGGT
131 TCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
**
135586 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCGGGAAA
196 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCAAGAAA
135651 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAAC-
261 TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACT
* * * * * *
135715 ATATTTAAGTGATAATTCTTTCTCTGTTAGTTCTTGGCTGAACTTTCAAACTTGTCAAACTTTTA
326 A-ATTTACGTGAGAATTGTTTCACTCTTAGTTCTTGGCCGAACTTTCAAACTTGTCAAACTTTTA
* * *
135780 CGAGTTCTGTTATAATTTCGTTTCCTTAAAGTATTCAAGAAGA
390 CGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGA
* **
135823 TTCATTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGAAAATTGCATCATTTGGTCCAAATA
1 TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGAAAATTGCATCATTTGGTCCAAATA
* *
135888 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTAAATTAAAAACTTATTTACATGAGAATTGTTTC
66 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
* * * *
135953 TCTC-TGGTTCTTGGCCAAACTTCCAAACTTTTCAAAATTTTACGAGTTCTTTTATAACTTTGGT
131 TCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
* * *
136017 TCCTTAAAGTATTCAAGACGACCCATTCCTTCGAGCAATTTTTCGAATATTCCATGCAT-AAGAA
196 TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGC-TCAAGAA
* * * *
136081 ATCACGTCATTTGGTCCAAATAGTTTGTCATTTTGTAATCAATTTTTTGTTTTTGAATTAAAAAC
260 ATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAAC
* * * * *
136146 TAATTTACGTGA-AAATGTTTTCACTCTTGGTTCTTGGCCAAACTTTCGAACTTGTAAAACTTTT
325 TAATTTACGTGAGAATTG-TTTCACTCTTAGTTCTTGGCCGAACTTTCAAACTTGTCAAACTTTT
* * * *
136210 ACGAGTTCTTTTATAATTTTATTTCCTTAAATTTTTCAAGGTGA
389 ACGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGA
* * * * * **
136254 TCCATTCCTTCGAGCAATATATCGAGCATTCCATGCTC-GAGAAATCGCATCATTTCATCCAAAT
1 TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGA-AAATTGCATCATTTGGTCCAAAT
* * * *
136318 AGTTTGTCATTTTGTGAGCAACTTTTTGTCTTTTAATTAAAAACTTATTTACGTGAGAATTGTTT
65 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * * *
136383 TTGTCTTAGTTCTTAGCCAAACTTTCAAAATTGTCAAACTTTTATGAGTTC-TTTATAACTTTGG
130 CTCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * *
136447 TTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGAAATTTTTTGAATATTCCATGCTC-AGAA
195 TTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCAAG-A
* * * *
136511 AATTGCATCATTAGGTCCAAATAGTTTGTCATTTTGTAATCAATTTTTTGTAATTGAATTAAAAA
259 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAA
* * * * *
136576 CTTATTTACGTGAGAATTGTTTCTA-TTTTAGTTCTTGGCCGAACTTTCGAGCTTGTCAAGCTTT
324 CTAATTTACGTGAGAATTGTTTC-ACTCTTAGTTCTTGGCCGAACTTTCAAACTTGTCAAACTTT
* *
136640 TACAAGTTCTTTTATAATTTTGTTTCATTAAAGTATTCAAGATGA
388 TACGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGA
* ** * **
136685 TCCATTCCTTCAAGCAATTTACCAAACATTCCATGCTCGGGAAATCT-CATCATTTGCACCAAAT
1 TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGAAAAT-TGCATCATTTGGTCCAAAT
* *
136749 AGTTTGTCATTTTGTAAACAACTTTTGGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTT
65 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * * *
136814 -TCTCTTGATTCTTGGCCGAATTTTCGATCTTTTCAAACTTTTACGAGTTCTTCTATAACTTTGG
130 CTCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * *
136878 TTGCTTAAAGTATTAAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATACTCGAA-A
195 TTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTC-AAGA
* * ** * ****
136942 AATCGCATCATTTAGTCTAAATAGTTTGTCAAATTGTAAAAAAAAAATTGTATTTGAATTAAAAA
259 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAA
* * * * *
137007 GTTATTTACGTGAGAATTGTTTCTCTCTTCGTTCTTGGCCGAACTTTCAAACTTGTCAGACTTTT
324 CTAATTTACGTGAGAATTGTTTCACTCTTAGTTCTTGGCCGAACTTTCAAACTTGTCAAACTTTT
* * *
137072 ACGTGTTCTTTTATAATTTTGGTTCCTTAAAGTATTCAAGACGA
389 ACGAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGA
* * *
137116 TTCATTCCTTCGAGCAATTTTTCCAACATTCCATGCTC-GAGAAATTGCATTATTTGGTCCAAAT
1 TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGA-AAATTGCATCATTTGGTCCAAAT
*
137180 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTAAGAATTGTTT
65 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTT
* * * * *
137245 CTCTCGTGGTTCTTGCCCAAACTTCCGAACTTATCAAACTTTTATGAGTTCTTTTATAACTTTGG
130 CTCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGG
* * * * * ** *
137310 TTTCTAAAAGTATTCAAGACGATCCATTCATTTGAGCAATTTTTTGAACATTCCATTCTCGGGGA
195 TTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCAAGAA
*
137375 ATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGCAAACAA
260 ATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAA
137417 CTTCTGGTTT
Statistics
Matches: 1384, Mismatches: 190, Indels: 39
0.86 0.12 0.02
Matches are distributed among these distances:
430 49 0.04
431 1107 0.80
432 227 0.16
433 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (432 bp):
TCCATTCCTTCGAGCAATTTTTCAAACATTCCATGCTCGGAAAATTGCATCATTTGGTCCAAATA
GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTC
TCTCTTGGTTCTTGGCCAAACTTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGT
TCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCAATTTTTCGAACATTCCATGCTCAAGAAA
TCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAATTTTTTGTATTTGAATTAAAAACT
AATTTACGTGAGAATTGTTTCACTCTTAGTTCTTGGCCGAACTTTCAAACTTGTCAAACTTTTAC
GAGTTCTTTTATAATTTTGTTTCCTTAAAGTATTCAAGATGA
Found at i:146585 original size:15 final size:15
Alignment explanation
Indices: 146566--146605 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
146556 TAACCAGTAG
146566 AAAGAGAAGGAAGAA
1 AAAGAGAAGGAAGAA
* *
146581 GAAGATAAGGAAGAA
1 AAAGAGAAGGAAGAA
146596 AAAGAAGAAG
1 AAAG-AGAAG
146606 AGAATGACAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.65, C:0.00, G:0.33, T:0.03
Consensus pattern (15 bp):
AAAGAGAAGGAAGAA
Found at i:147069 original size:17 final size:18
Alignment explanation
Indices: 147047--147087 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
147037 TAGTTTTTCA
147047 TGCATTTT-TATTGTCAC
1 TGCATTTTCTATTGTCAC
* *
147064 TGCATTTTCTTTTGTCAT
1 TGCATTTTCTATTGTCAC
147082 TGCATT
1 TGCATT
147088 CATTTTGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.15, C:0.17, G:0.12, T:0.56
Consensus pattern (18 bp):
TGCATTTTCTATTGTCAC
Found at i:149459 original size:22 final size:22
Alignment explanation
Indices: 149434--149479 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
149424 TTCTTTGACT
149434 TTGTTTTTTCCTTTCCTTAATC
1 TTGTTTTTTCCTTTCCTTAATC
149456 TTGTTTTTTCCTTTCCTTAATC
1 TTGTTTTTTCCTTTCCTTAATC
149478 TT
1 TT
149480 TCAGCCTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.09, C:0.22, G:0.04, T:0.65
Consensus pattern (22 bp):
TTGTTTTTTCCTTTCCTTAATC
Found at i:152802 original size:29 final size:29
Alignment explanation
Indices: 152769--153046 Score: 226
Period size: 30 Copynumber: 9.4 Consensus size: 29
152759 TTCGGGTGTA
**
152769 AAAATGTAATTTTAGAAAGTTTGGGGGTT
1 AAAATGTAATTTTAGAAAGTTTAAGGGTT
* *
152798 AAAATGTGATTTTTGGAAAGTTTAAGGG-T
1 AAAATGT-AATTTTAGAAAGTTTAAGGGTT
152827 AAAGATGTAA-TTTATGAAAGTTTAAGGGTT
1 AAA-ATGTAATTTTA-GAAAGTTTAAGGGTT
* *
152857 AAAATGTAATTTTTGAAAAGTTTAGGGGTT
1 AAAATGTAATTTTAG-AAAGTTTAAGGGTT
* * *
152887 AAAAT-TGGATTTTTGTAAAGTTTAAGGGTA
1 AAAATGT-AATTTTAG-AAAGTTTAAGGGTT
* * *
152917 AAAATGTAATTTTGGAAAGTATAA-GATT
1 AAAATGTAATTTTAGAAAGTTTAAGGGTT
* * *
152945 AAATTGTGATTTTTAGAAAGTTT-AGGGGT
1 AAAATGT-AATTTTAGAAAGTTTAAGGGTT
* ** *
152974 AAAATTATAATTTTAGAAAGTTCGAGGGTCA
1 AAAA-TGTAATTTTAGAAAGTTTAAGGGT-T
* * *
153005 AAACAT-TATTTTTGGAAAGTTTAAGGGTA
1 AAA-ATGTAATTTTAGAAAGTTTAAGGGTT
153034 AAAATGTAATTTT
1 AAAATGTAATTTT
153047 GTGAAGTTTT
Statistics
Matches: 200, Mismatches: 34, Indels: 30
0.76 0.13 0.11
Matches are distributed among these distances:
28 14 0.07
29 81 0.41
30 99 0.50
31 5 0.03
32 1 0.00
ACGTcount: A:0.38, C:0.01, G:0.23, T:0.38
Consensus pattern (29 bp):
AAAATGTAATTTTAGAAAGTTTAAGGGTT
Found at i:152835 original size:59 final size:58
Alignment explanation
Indices: 152769--153084 Score: 232
Period size: 59 Copynumber: 5.4 Consensus size: 58
152759 TTCGGGTGTA
**
152769 AAAATGT-AATTTTAGAAAGTTTGGGGGTTAAAATGTGATTTTTGGAAAGTTTAAGGGT
1 AAAATGTGAATTTTAGAAAGTTTAAGGGTTAAAATGT-ATTTTTGGAAAGTTTAAGGGT
* *
152827 AAAGATGT-AA-TTTATGAAAGTTTAAGGGTTAAAATGTAATTTTTGAAAAGTTTAGGGGTT
1 AAA-ATGTGAATTTTA-GAAAGTTTAAGGGTTAAAATGT-ATTTTTGGAAAGTTTAAGGG-T
* * * * * **
152887 AAAAT-TGGATTTTTGTAAAGTTTAAGGGTAAAAATGTAATTTTGGAAAGTATAAGATT
1 AAAATGTGAATTTTAG-AAAGTTTAAGGGTTAAAATGTATTTTTGGAAAGTTTAAGGGT
* * * * **
152945 AAATTGTGATTTTTAGAAAGTTT-AGGGGTAAAAT-TATAATTTTAGAAAGTTCGAGGGT
1 AAAATGTGAATTTTAGAAAGTTTAAGGGTTAAAATGTAT--TTTTGGAAAGTTTAAGGGT
** * * * * * *
153003 CAAAACATTATTTTTGGAAAGTTTAAGGGTAAAAATGTAATTTTGTG-AAGTTTTAGGGT
1 -AAAATGTGAATTTTAGAAAGTTTAAGGGTTAAAATGTATTTTTG-GAAAGTTTAAGGGT
* * *
153062 CAAAACGTGATTTTTAAAAAGTT
1 -AAAATGTGAATTTTAGAAAGTT
153085 CGAGGACCTT
Statistics
Matches: 203, Mismatches: 42, Indels: 25
0.75 0.16 0.09
Matches are distributed among these distances:
56 2 0.01
57 9 0.04
58 33 0.16
59 120 0.59
60 37 0.18
61 2 0.01
ACGTcount: A:0.38, C:0.02, G:0.23, T:0.38
Consensus pattern (58 bp):
AAAATGTGAATTTTAGAAAGTTTAAGGGTTAAAATGTATTTTTGGAAAGTTTAAGGGT
Found at i:153047 original size:29 final size:29
Alignment explanation
Indices: 152766--153075 Score: 250
Period size: 29 Copynumber: 10.6 Consensus size: 29
152756 ATTTTCGGGT
* **
152766 GTAAAAATGTAATTTTAGAAAGTTTGGGG
1 GTAAAAATGTAATTTTGGAAAGTTTAAGG
* *
152795 GTTAAAATGTGATTTTTGGAAAGTTTAAGG
1 GTAAAAATGT-AATTTTGGAAAGTTTAAGG
*
152825 GTAAAGATGTAATTTAT-GAAAGTTTAAGG
1 GTAAAAATGTAATTT-TGGAAAGTTTAAGG
* * *
152854 GTTAAAATGTAATTTTTGAAAAGTTTAGGG
1 GTAAAAATGTAA-TTTTGGAAAGTTTAAGG
* * * *
152884 GTTAAAATTGGATTTTTGTAAAGTTTAAGG
1 G-TAAAAATGTAATTTTGGAAAGTTTAAGG
*
152914 GTAAAAATGTAATTTTGGAAAGTATAA-G
1 GTAAAAATGTAATTTTGGAAAGTTTAAGG
* * * * * *
152942 ATTAAATTGTGATTTTTAGAAAGTTTAGGG
1 GTAAAAATGT-AATTTTGGAAAGTTTAAGG
* * * **
152972 GTAAAATTATAATTTTAGAAAGTTCGAGG
1 GTAAAAATGTAATTTTGGAAAGTTTAAGG
*
153001 GTCAAAACAT-TATTTTTGGAAAGTTTAAGG
1 GT-AAAA-ATGTAATTTTGGAAAGTTTAAGG
*
153031 GTAAAAATGTAATTTTGTG-AAGTTTTAGG
1 GTAAAAATGTAATTTTG-GAAAGTTTAAGG
* * *
153060 GTCAAAACGTGATTTT
1 GTAAAAATGTAATTTT
153076 TAAAAAGTTC
Statistics
Matches: 223, Mismatches: 47, Indels: 22
0.76 0.16 0.08
Matches are distributed among these distances:
28 10 0.04
29 120 0.54
30 85 0.38
31 8 0.04
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.38
Consensus pattern (29 bp):
GTAAAAATGTAATTTTGGAAAGTTTAAGG
Found at i:154053 original size:216 final size:217
Alignment explanation
Indices: 153680--154577 Score: 1156
Period size: 216 Copynumber: 4.2 Consensus size: 217
153670 GTCATCGTTC
* * * * * *
153680 TGTAAACAACTTTTGGTCTTTGAACTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTGGTTC
1 TGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGTTC
* * *
153745 TTGGTC-GAACTTCCGAACTTGTCAAACTTTGACGAGTTC-TTTATAACTTCGATTCCTTAAAGT
66 TTGGTCTGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
* * *
153808 ATTCAGGACGATTCATTCCTTTGAGCAATTTTCCT-AACATTCCATGCTCGAGAAATCGCATCAT
131 ATTCAAGACGATCCATTCCTTCGAGCAATTTT-CTGAACATTCCATGCTCGAGAAATCGCATCAT
153872 TTGGTCCAAATAGTTTGTCATTT
195 TTGGTCCAAATAGTTTGTCATTT
*
153895 TGTAAACAATTTTTTTGTATTTGAATTAAAAACTTATTTACGTGAGAATT-TTTCTCTATTGGTT
1 TGTAAACAA-TTTTTTGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGTT
* * *
153959 CTTGGTC-GAACTTTCGAACTTGTAAAACTTTTACGAGGTCTTTTATAACTTTGGTTCCTTAAAG
65 CTTGGTCTGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * *
154023 TATTCAAGACAATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGTTC-AGGAAATCGCATCA
130 TATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGA-GAAATCGCATCA
154087 TTTGGTCCAAATAGTTTGTCATTT
194 TTTGGTCCAAATAGTTTGTCATTT
* * * * * *
154111 TCTAATCAATCTTTTGTTTTTGAATTAAAAACTTATTTACATGAGAATTTTTTCTCTCTTGGTTC
1 TGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGTTC
* *
154176 TTGG-CTGAACTGT-CGAACTTGTATAAA-TTTTACGAGTTCTTTTATAATTTCGTTTCCTTAAA
66 TTGGTCTGAACT-TCCGAACTTGTA-AAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAA
* * * * * * *
154238 GTAGTCAAGATGATCCATTCCTTCAAGCAATGTAC-CATACATTCCATGCTCGGGAAATCGCATC
129 GTATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGA-ACATTCCATGCTCGAGAAATCGCATC
154302 ATTTGGTCCAAATAGTTTGTCATTT
193 ATTTGGTCCAAATAGTTTGTCATTT
* * * * * * **
154327 TGTGAACAACTTTTTATCTTTGAATTAAAAATTTATTTACATGAGAATTGTTTCT-AACTTATTT
1 TGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTA-TTGGTT
* * * *
154391 CTTGGCCTGAACTTCCGAAATTGTCAAACTTTTATGAGTTCTTTTATAACTTCGGTTCCTTAAAG
65 CTTGGTCTGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAG
* * * * * *
154456 TATTCAAGACGATTCATTCCTTCGAGTAATTTTTTGAACATTCCGTGCTCG-GAAAATCGTATAA
130 TATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAG-AAATCGCATCA
154520 TTTGGTCCAAATAGTTTGTCATTT
194 TTTGGTCCAAATAGTTTGTCATTT
*
154544 TGTAATCAATTTTTT-TATTTGAATTAAAAACTTA
1 TGTAAACAATTTTTTGTATTTGAATTAAAAACTTA
154578 AGGTGTGTTT
Statistics
Matches: 595, Mismatches: 72, Indels: 31
0.85 0.10 0.04
Matches are distributed among these distances:
215 100 0.17
216 358 0.60
217 136 0.23
218 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.42
Consensus pattern (217 bp):
TGTAAACAATTTTTTGTATTTGAATTAAAAACTTATTTACATGAGAATTGTTTCTCTATTGGTTC
TTGGTCTGAACTTCCGAACTTGTAAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGT
ATTCAAGACGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGAGAAATCGCATCATT
TGGTCCAAATAGTTTGTCATTT
Found at i:158314 original size:26 final size:26
Alignment explanation
Indices: 158284--158335 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
158274 AGTTTAACAT
158284 TGATTTTGAGAA-GAAGTTTGGAAAAG
1 TGATTTTGA-AATGAAGTTTGGAAAAG
* *
158310 TGATTTTGAAATGTAGTTTTGAAAAG
1 TGATTTTGAAATGAAGTTTGGAAAAG
158336 CTTGGTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATTTTGAAATGAAGTTTGGAAAAG
Found at i:160286 original size:18 final size:19
Alignment explanation
Indices: 160235--160287 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
160225 TAAATTATAC
*
160235 ATTTTATTATTTATTTCGA
1 ATTTTATAATTTATTTCGA
* *
160254 ATTTTATGATATATTT-GA
1 ATTTTATAATTTATTTCGA
160272 ATATTTA-AATTTATTT
1 AT-TTTATAATTTATTT
160288 AGGACTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 11 0.38
19 18 0.62
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (19 bp):
ATTTTATAATTTATTTCGA
Found at i:162107 original size:13 final size:13
Alignment explanation
Indices: 162072--162101 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
162062 ATAAAACAAT
162072 TAAAATAAATAAA
1 TAAAATAAATAAA
*
162085 TAAAATAAATCAA
1 TAAAATAAATAAA
162098 TAAA
1 TAAA
162102 TCAAATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.23
Consensus pattern (13 bp):
TAAAATAAATAAA
Found at i:163603 original size:19 final size:20
Alignment explanation
Indices: 163581--163618 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
163571 AGATAAACCC
163581 ATAAA-ATTAATTGAAACTG
1 ATAAAGATTAATTGAAACTG
* *
163600 ATAAAGGTTTATTGAAACT
1 ATAAAGATTAATTGAAACT
163619 TGACCAACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.34
Consensus pattern (20 bp):
ATAAAGATTAATTGAAACTG
Found at i:165776 original size:23 final size:24
Alignment explanation
Indices: 165748--165799 Score: 97
Period size: 23 Copynumber: 2.2 Consensus size: 24
165738 TATGGATAAG
165748 ATTAATTAAAGTTAAAAGAGATT-
1 ATTAATTAAAGTTAAAAGAGATTA
165771 ATTAATTAAAGTTAAAAGAGATTA
1 ATTAATTAAAGTTAAAAGAGATTA
165795 ATTAA
1 ATTAA
165800 GCTTAATTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 23 0.82
24 5 0.18
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.35
Consensus pattern (24 bp):
ATTAATTAAAGTTAAAAGAGATTA
Found at i:165969 original size:156 final size:156
Alignment explanation
Indices: 165758--166069 Score: 570
Period size: 156 Copynumber: 2.0 Consensus size: 156
165748 ATTAATTAAA
* *
165758 GTTAAAAGAGATTATTAATTAAAGTTAAAAGAGATTAATTAAGCTTAATTGTAAAAGATCTAAAA
1 GTTAAAAGAGATTATTAATTAAAGTTAAAAGAGATTAATTAAGCTTAATTATAAAAGACCTAAAA
*
165823 AAGTACAAAAATGCCTAAGTATATAAATGAAAAATAAAAGAAACAAAAGATGATATTTTCATCTT
66 AAGTACAAAAATGCCGAAGTATATAAATGAAAAATAAAAGAAACAAAAGATGATATTTTCATCTT
165888 CTTCTTCTTCTTTCTTTCTTTCTTTC
131 CTTCTTCTTCTTTCTTTCTTTCTTTC
165914 GTTAAAAGAGATTATTAATTAAAGTTAAAAGAGATTAATTAAGCTTAATTATAAAAGACCTAAAA
1 GTTAAAAGAGATTATTAATTAAAGTTAAAAGAGATTAATTAAGCTTAATTATAAAAGACCTAAAA
**
165979 TGGTACAAAAATGCCGAAGTATATAAATGAAAAATAAAAGAAACAAAAGATGATATTTTCATCTT
66 AAGTACAAAAATGCCGAAGTATATAAATGAAAAATAAAAGAAACAAAAGATGATATTTTCATCTT
*
166044 CTTCTTCTTCTTTCTTTTTTTCTTTC
131 CTTCTTCTTCTTTCTTTCTTTCTTTC
166070 ACGGTTGAAA
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
156 150 1.00
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (156 bp):
GTTAAAAGAGATTATTAATTAAAGTTAAAAGAGATTAATTAAGCTTAATTATAAAAGACCTAAAA
AAGTACAAAAATGCCGAAGTATATAAATGAAAAATAAAAGAAACAAAAGATGATATTTTCATCTT
CTTCTTCTTCTTTCTTTCTTTCTTTC
Found at i:166836 original size:28 final size:28
Alignment explanation
Indices: 166788--166876 Score: 133
Period size: 28 Copynumber: 3.2 Consensus size: 28
166778 TTGAGAACTG
* **
166788 CTCTGAATTTTGGCTTATAAGAGCACTA
1 CTCTGTATTTTGGCTCGTAAGAGCACTA
*
166816 CTTTGTATTTTGGCTCGTAAGAGCACTA
1 CTCTGTATTTTGGCTCGTAAGAGCACTA
*
166844 CTCTGTATTTTGGCTCGTAAGAGCATTA
1 CTCTGTATTTTGGCTCGTAAGAGCACTA
166872 CTCTG
1 CTCTG
166877 AACTCTGGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.38
Consensus pattern (28 bp):
CTCTGTATTTTGGCTCGTAAGAGCACTA
Found at i:166885 original size:28 final size:28
Alignment explanation
Indices: 166826--166904 Score: 86
Period size: 28 Copynumber: 2.8 Consensus size: 28
166816 CTTTGTATTT
* * * *
166826 TGGCTCGTAAGAGCACTACTCTGTATTT
1 TGGCTCGTAAGAGCATTACTCTGAACTC
166854 TGGCTCGTAAGAGCATTACTCTGAACTC
1 TGGCTCGTAAGAGCATTACTCTGAACTC
* * * *
166882 TGGCTTGAAAGAGCGTTATTCTG
1 TGGCTCGTAAGAGCATTACTCTG
166905 TATAATAGGC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (28 bp):
TGGCTCGTAAGAGCATTACTCTGAACTC
Found at i:166886 original size:56 final size:56
Alignment explanation
Indices: 166788--166895 Score: 126
Period size: 56 Copynumber: 1.9 Consensus size: 56
166778 TTGAGAACTG
* * * * * *
166788 CTCTGAATTTTGGCTTATAAGAGCACTACTTTGTATTTTGGCTCGTAAGAGCACTA
1 CTCTGAATTTTGGCTCATAAGAGCACTACTCTGAACTCTGGCTCGAAAGAGCACTA
* * * *
166844 CTCTGTATTTTGGCTCGTAAGAGCATTACTCTGAACTCTGGCTTGAAAGAGC
1 CTCTGAATTTTGGCTCATAAGAGCACTACTCTGAACTCTGGCTCGAAAGAGC
166896 GTTATTCTGT
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
56 42 1.00
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.35
Consensus pattern (56 bp):
CTCTGAATTTTGGCTCATAAGAGCACTACTCTGAACTCTGGCTCGAAAGAGCACTA
Found at i:167960 original size:14 final size:14
Alignment explanation
Indices: 167941--167983 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
167931 GAATCCAAGT
167941 AAAATAAAACAATA
1 AAAATAAAACAATA
167955 AAAATAAATA-AAT-
1 AAAATAAA-ACAATA
*
167968 AAAATAGAACAATA
1 AAAATAAAACAATA
167982 AA
1 AA
167984 TCAAAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 1 0.04
13 10 0.40
14 13 0.52
15 1 0.04
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.16
Consensus pattern (14 bp):
AAAATAAAACAATA
Found at i:167971 original size:13 final size:13
Alignment explanation
Indices: 167940--167983 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
167930 TGAATCCAAG
167940 TAAAATAAAACAA
1 TAAAATAAAACAA
167953 TAAAAATAAATA-AA
1 T-AAAATAAA-ACAA
*
167967 TAAAATAGAACAA
1 TAAAATAAAACAA
167980 TAAA
1 TAAA
167984 TCAAAAATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 1 0.04
13 14 0.52
14 11 0.41
15 1 0.04
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (13 bp):
TAAAATAAAACAA
Found at i:167997 original size:20 final size:21
Alignment explanation
Indices: 167942--168003 Score: 69
Period size: 20 Copynumber: 3.1 Consensus size: 21
167932 AATCCAAGTA
*
167942 AAATAAA-ACAATA-AA-AAT
1 AAATAAATAAAATAGAACAAT
167960 AAATAAATAAAATAGAACAAT
1 AAATAAATAAAATAGAACAAT
* *
167981 AAATCAA-AAATTAGAACAAT
1 AAATAAATAAAATAGAACAAT
168001 AAA
1 AAA
168004 GAAGAAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 7 0.18
19 5 0.13
20 17 0.45
21 9 0.24
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.18
Consensus pattern (21 bp):
AAATAAATAAAATAGAACAAT
Found at i:169174 original size:23 final size:23
Alignment explanation
Indices: 169144--169191 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
169134 TTATTATTAT
169144 TAGAGTCCGACATAAGTACCACC
1 TAGAGTCCGACATAAGTACCACC
169167 TAGAGTCCGACATAAGTACCACC
1 TAGAGTCCGACATAAGTACCACC
169190 TA
1 TA
169192 TCAACTGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.29, G:0.17, T:0.19
Consensus pattern (23 bp):
TAGAGTCCGACATAAGTACCACC
Found at i:169845 original size:20 final size:19
Alignment explanation
Indices: 169822--169862 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
169812 TAAACAAATG
169822 AACACAAATCTAATATTTAA
1 AACACAAATCTAATA-TTAA
* *
169842 AACATAAATTTAATATTAA
1 AACACAAATCTAATATTAA
169861 AA
1 AA
169863 GTTATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.32
Consensus pattern (19 bp):
AACACAAATCTAATATTAA
Found at i:177088 original size:14 final size:14
Alignment explanation
Indices: 177071--177107 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
177061 CGGTTAACGC
177071 TCAATGGTCAATGG
1 TCAATGGTCAATGG
*
177085 TCAATGGTCAATTG
1 TCAATGGTCAATGG
*
177099 TCAACGGTC
1 TCAATGGTC
177108 GATCAACGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (14 bp):
TCAATGGTCAATGG
Found at i:182433 original size:278 final size:278
Alignment explanation
Indices: 181923--182496 Score: 1096
Period size: 278 Copynumber: 2.1 Consensus size: 278
181913 ACGCATAACG
*
181923 AACCAAT-CTCAGGAACTATGTCTTACAATCATTAATGGACATATCCCCCTGTCTCAAGTTCATA
1 AACCAATACTCAGCAACTATGTCTTACAATCATTAATGGACATATCCCCCTGTCTCAAGTTCATA
*
181987 AAGTCGTCCCTACATTTGTCGAGAAATTCCTCACCTATATAACGATCCTGGAAAGACTCCCTAAA
66 AAGTCGTCCCTACATTTGTCGAGAAATTCCTCACCTATATAACAATCCTGGAAAGACTCCCTAAA
*
182052 ATAATCCCATGTAGTTTGTCTAGTAGGAGTAGACTCTTCCACAGTGTTCTACCAATTTTGGGCCT
131 ATAATCCCATGTAGTTTGTCTAGTAGGAGTAGACTATTCCACAGTGTTCTACCAATTTTGGGCCT
*
182117 CACCCCTCAGTAAAGAGATAGCAACTCTAACCTTCTATCCACCACGGTAGTTCATCTTTACAAAC
196 CACCCCTCAGTAAAGAGATAGCAACTCTAACCTTCTATCAACCACGGTAGTTCATCTTTACAAAC
182182 AATCTCTGTAAATCCTTT
261 AATCTCTGTAAATCCTTT
182200 AACCAATACTCAGCAACTATGTCTTACAATCATTAATGGACATATCCCCCTGTCTCAAGTTCATA
1 AACCAATACTCAGCAACTATGTCTTACAATCATTAATGGACATATCCCCCTGTCTCAAGTTCATA
182265 AAGTCGTCCCTACATTTGTCGAGAAATTCCTCACCTATATAACAATCCTGGAAAGACTCCCTAAA
66 AAGTCGTCCCTACATTTGTCGAGAAATTCCTCACCTATATAACAATCCTGGAAAGACTCCCTAAA
182330 ATAATCCCATGTAGTTTGTCTAGTAGGAGTAGACTATTCCACAGTGTTCTACCAATTTTGGGCCT
131 ATAATCCCATGTAGTTTGTCTAGTAGGAGTAGACTATTCCACAGTGTTCTACCAATTTTGGGCCT
*
182395 CACCCCTCAGTAAAGAGATAGCAACTCTAACCTTCTATCAACCAGGGTAGTTCATCTTTACAAAC
196 CACCCCTCAGTAAAGAGATAGCAACTCTAACCTTCTATCAACCACGGTAGTTCATCTTTACAAAC
182460 AATCTCTGTAAATCCTTT
261 AATCTCTGTAAATCCTTT
182478 AACCAATACTCAGCAACTA
1 AACCAATACTCAGCAACTA
182497 AAGGATCTAT
Statistics
Matches: 291, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
277 7 0.02
278 284 0.98
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.29
Consensus pattern (278 bp):
AACCAATACTCAGCAACTATGTCTTACAATCATTAATGGACATATCCCCCTGTCTCAAGTTCATA
AAGTCGTCCCTACATTTGTCGAGAAATTCCTCACCTATATAACAATCCTGGAAAGACTCCCTAAA
ATAATCCCATGTAGTTTGTCTAGTAGGAGTAGACTATTCCACAGTGTTCTACCAATTTTGGGCCT
CACCCCTCAGTAAAGAGATAGCAACTCTAACCTTCTATCAACCACGGTAGTTCATCTTTACAAAC
AATCTCTGTAAATCCTTT
Found at i:186538 original size:89 final size:89
Alignment explanation
Indices: 186387--186570 Score: 314
Period size: 89 Copynumber: 2.1 Consensus size: 89
186377 AGAATTAAGT
*
186387 AAGAATTAAAGTAATCTAACATTGAAAGATACTTCCATATACAATCAATTGTCAATAAAATTCAT
1 AAGAATCAAAGTAATCTAACATTGAAAGATACTTCCATATACAATCAATTGTCAATAAAATTCAT
* **
186452 TAACATTAAAAGAGGGATTAACAA
66 CAACATTAAAAGAGAAATTAACAA
186476 AAGAATCAAAGTAATCTAACATTGAAAGATACTTCCATATACAATCAATTGTCAATAAAATTCAT
1 AAGAATCAAAGTAATCTAACATTGAAAGATACTTCCATATACAATCAATTGTCAATAAAATTCAT
*
186541 CAGCATTAAAAGAGAAATTAACAA
66 CAACATTAAAAGAGAAATTAACAA
*
186565 ATGAAT
1 AAGAAT
186571 TGAAGCATGC
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (89 bp):
AAGAATCAAAGTAATCTAACATTGAAAGATACTTCCATATACAATCAATTGTCAATAAAATTCAT
CAACATTAAAAGAGAAATTAACAA
Found at i:194042 original size:26 final size:26
Alignment explanation
Indices: 194012--194062 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
194002 GCTATGAGTG
194012 TGTTTCTTGGATTATTATGTAACAGA
1 TGTTTCTTGGATTATTATGTAACAGA
194038 TGTTTCTTGGATTATTATGTAACAG
1 TGTTTCTTGGATTATTATGTAACAG
194063 TCAACATTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.08, G:0.20, T:0.47
Consensus pattern (26 bp):
TGTTTCTTGGATTATTATGTAACAGA
Found at i:210228 original size:21 final size:22
Alignment explanation
Indices: 210204--210245 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
210194 GGAAAAATCA
210204 AAAAGAAAAATGAGT-AGAAAC
1 AAAAGAAAAATGAGTAAGAAAC
**
210225 AAAAGAATCATGAGTAAGAAA
1 AAAAGAAAAATGAGTAAGAAA
210246 ACATGTGAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.64, C:0.05, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAGAAAAATGAGTAAGAAAC
Found at i:215657 original size:21 final size:21
Alignment explanation
Indices: 215633--215679 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
215623 CAACAAAAGC
215633 AAAAACAAAA-ACAAAATAATG
1 AAAAACAAAACA-AAAATAATG
*
215654 AAAAACAAAGCAAAAATAATG
1 AAAAACAAAACAAAAATAATG
215675 AAAAA
1 AAAAA
215680 TTCCTATGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 23 0.96
22 1 0.04
ACGTcount: A:0.77, C:0.09, G:0.06, T:0.09
Consensus pattern (21 bp):
AAAAACAAAACAAAAATAATG
Found at i:234352 original size:11 final size:11
Alignment explanation
Indices: 234338--234373 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
234328 TTGAGAAAAG
234338 AAAGAAAAGAAA
1 AAAGAAAAG-AA
234350 AAGAGAAAAGAA
1 AA-AGAAAAGAA
234362 AAAGAAAAGAA
1 AAAGAAAAGAA
234373 A
1 A
234374 TAATTAGCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 10 0.43
12 6 0.26
13 7 0.30
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAGAAAAGAA
Found at i:234358 original size:13 final size:13
Alignment explanation
Indices: 234340--234366 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
234330 GAGAAAAGAA
234340 AGAAAAGAAAAAG
1 AGAAAAGAAAAAG
234353 AGAAAAGAAAAAG
1 AGAAAAGAAAAAG
234366 A
1 A
234367 AAAGAAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (13 bp):
AGAAAAGAAAAAG
Found at i:234370 original size:24 final size:22
Alignment explanation
Indices: 234330--234373 Score: 70
Period size: 24 Copynumber: 1.9 Consensus size: 22
234320 AAAAAATTTT
234330 GAGAAAAGAAAGAAAAGAAAAA
1 GAGAAAAGAAAGAAAAGAAAAA
234352 GAGAAAAGAAAAAGAAAAGAAA
1 GAGAAAAG--AAAGAAAAGAAA
234374 TAATTAGCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
24 12 0.60
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (22 bp):
GAGAAAAGAAAGAAAAGAAAAA
Found at i:236257 original size:22 final size:22
Alignment explanation
Indices: 236232--236284 Score: 106
Period size: 22 Copynumber: 2.4 Consensus size: 22
236222 TTTCCACATT
236232 CAGGAGTCGATGTTGTGACACA
1 CAGGAGTCGATGTTGTGACACA
236254 CAGGAGTCGATGTTGTGACACA
1 CAGGAGTCGATGTTGTGACACA
236276 CAGGAGTCG
1 CAGGAGTCG
236285 TGTCAAGATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.21
Consensus pattern (22 bp):
CAGGAGTCGATGTTGTGACACA
Found at i:240236 original size:12 final size:13
Alignment explanation
Indices: 240210--240242 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
240200 GATATGCATG
240210 AAAACTAAAACTA
1 AAAACTAAAACTA
*
240223 AAAACTGAAA-TA
1 AAAACTAAAACTA
240235 AAAACTAA
1 AAAACTAA
240243 CTCAATTCAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 9 0.50
13 9 0.50
ACGTcount: A:0.70, C:0.12, G:0.03, T:0.15
Consensus pattern (13 bp):
AAAACTAAAACTA
Found at i:242648 original size:26 final size:27
Alignment explanation
Indices: 242614--242702 Score: 144
Period size: 27 Copynumber: 3.3 Consensus size: 27
242604 CCATACGAGC
*
242614 CCAGAATCAGAATAATGCTC-TTTGAG
1 CCAGAATCAGAATAACGCTCTTTTGAG
*
242640 CCAAAATCAGAATAACGCTCTTTTGAG
1 CCAGAATCAGAATAACGCTCTTTTGAG
*
242667 CTAGAATCAGAATAACGCTCTTTTGAG
1 CCAGAATCAGAATAACGCTCTTTTGAG
242694 CCAGAATCA
1 CCAGAATCA
242703 AATTACTCCT
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 18 0.32
27 39 0.68
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (27 bp):
CCAGAATCAGAATAACGCTCTTTTGAG
Found at i:244013 original size:22 final size:20
Alignment explanation
Indices: 243967--244007 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
243957 CCACTTATAC
243967 AAAATTTTAATTCAATAATT
1 AAAATTTTAATTCAATAATT
243987 AAAATCTTTCAATTCAA-AATT
1 AAAAT-TTT-AATTCAATAATT
244008 CCAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.26
21 7 0.37
22 7 0.37
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAATTTTAATTCAATAATT
Found at i:251497 original size:22 final size:22
Alignment explanation
Indices: 251469--251515 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
251459 TATTTAACAA
251469 CTTCACAGTACAGGTGTCCTTC
1 CTTCACAGTACAGGTGTCCTTC
251491 CTTCACAGTACAGGTGTCCTTC
1 CTTCACAGTACAGGTGTCCTTC
251513 CTT
1 CTT
251516 TCAAATCTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.17, C:0.32, G:0.17, T:0.34
Consensus pattern (22 bp):
CTTCACAGTACAGGTGTCCTTC
Found at i:255090 original size:2 final size:2
Alignment explanation
Indices: 255083--255110 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
255073 AGAAATTCAA
255083 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
255111 TGCATCCCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:257323 original size:22 final size:21
Alignment explanation
Indices: 257284--257324 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
257274 GAGAAAAATT
*
257284 AGAAAATGCAAAAAAAAAGAG
1 AGAAAATACAAAAAAAAAGAG
*
257305 AGAAAATAACAAAAGAAAAG
1 AGAAAAT-ACAAAAAAAAAG
257325 CAAAAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.73, C:0.05, G:0.17, T:0.05
Consensus pattern (21 bp):
AGAAAATACAAAAAAAAAGAG
Found at i:263465 original size:16 final size:16
Alignment explanation
Indices: 263444--263482 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
263434 AAAAGTGATT
*
263444 AAAAAAGTA-GAGAAA
1 AAAAAAATACGAGAAA
263459 AAAAAAATACGAGAAA
1 AAAAAAATACGAGAAA
263475 AATAAAAA
1 AA-AAAAA
263483 ATAAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 8 0.38
17 5 0.24
ACGTcount: A:0.77, C:0.03, G:0.13, T:0.08
Consensus pattern (16 bp):
AAAAAAATACGAGAAA
Found at i:263481 original size:18 final size:16
Alignment explanation
Indices: 263443--263485 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
263433 AAAAAGTGAT
263443 TAAAAAAGTAGAGAAAA
1 TAAAAAA-TAGAGAAAA
263460 -AAAAAATACGAGAAAAA
1 TAAAAAATA-GAG-AAAA
263477 TAAAAAATA
1 TAAAAAATA
263486 AAAAATATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 2 0.09
16 9 0.39
17 4 0.17
18 8 0.35
ACGTcount: A:0.74, C:0.02, G:0.12, T:0.12
Consensus pattern (16 bp):
TAAAAAATAGAGAAAA
Found at i:265173 original size:24 final size:24
Alignment explanation
Indices: 265153--265199 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
265143 TCTCAAGAGA
265153 AAAAAGAAAATGAAAAACAAGAAG
1 AAAAAGAAAATGAAAAACAAGAAG
*
265177 AAAATGAAAATGAAAAACAAGAA
1 AAAAAGAAAATGAAAAACAAGAA
265200 TATACCCATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.74, C:0.04, G:0.15, T:0.06
Consensus pattern (24 bp):
AAAAAGAAAATGAAAAACAAGAAG
Found at i:281595 original size:38 final size:38
Alignment explanation
Indices: 281486--281747 Score: 166
Period size: 38 Copynumber: 6.9 Consensus size: 38
281476 GCGAAGCTAC
* * *
281486 CATCCAATCTTTTACACTGATCAAAGGGC--ATTAAAG
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAG
* ** * *
281522 ACA-CACTAATCTTAT-CCC-AATCATGGGGAAAATTGAAG
1 -CATC-C-AATCTTTTACCCTAATCAAAGGGCAGATTGAAG
* * *
281560 CATTCAATCTTTTATCCTAATCAAAGGGCAGATTGAAAA
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATTG-AAG
* *
281599 CA-CACAAATC--TTA-CCTCGATC-ATGAGGCAGATTGAAG
1 CATC-C-AATCTTTTACCCT-AATCAAAG-GGCAGATTGAAG
* *
281636 CATCCAATCTTTTACCCTAATCATAGGGTAGATTGAAG
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAG
* * * * *
281674 ACACACCAATCTCTTACCCTGATCATAGGGTAGATTGAAG
1 -CA-TCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAG
* *
281714 CATCCAATCTTTTACCCTAACCAGAGGGCAGATT
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATT
281748 TAAGTTACCC
Statistics
Matches: 174, Mismatches: 32, Indels: 37
0.72 0.13 0.15
Matches are distributed among these distances:
36 19 0.11
37 20 0.11
38 85 0.49
39 13 0.07
40 37 0.21
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.27
Consensus pattern (38 bp):
CATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAG
Found at i:281725 original size:78 final size:75
Alignment explanation
Indices: 281486--281747 Score: 289
Period size: 76 Copynumber: 3.5 Consensus size: 75
281476 GCGAAGCTAC
* * * * *
281486 CATCCAATCTTTTACACTGATCAAAGGGC--ATTAAAGACACACTAATCTTATCCC-AATCATGG
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTTA-CCCTGATCAT-G
*
281548 GGAAAATTGAAG
64 GGAAGATTGAAG
* * * *
281560 CATTCAATCTTTTATCCTAATCAAAGGGCAGATTGAAAACACACAAATCTTA-CCTCGATCATGA
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTTACCCT-GATCATG-
*
281624 GGCAGATTGAAG
64 GGAAGATTGAAG
* *
281636 CATCCAATCTTTTACCCTAATCATAGGGTAGATTGAAGACACACCAATCTCTTACCCTGATCATA
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAA--TCTTACCCTGATCAT-
*
281701 GGGTAGATTGAAG
63 GGGAAGATTGAAG
* *
281714 CATCCAATCTTTTACCCTAACCAGAGGGCAGATT
1 CATCCAATCTTTTACCCTAATCAAAGGGCAGATT
281748 TAAGTTACCC
Statistics
Matches: 159, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
74 27 0.17
75 1 0.01
76 74 0.47
78 53 0.33
79 4 0.03
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.27
Consensus pattern (75 bp):
CATCCAATCTTTTACCCTAATCAAAGGGCAGATTGAAGACACACCAATCTTACCCTGATCATGGG
AAGATTGAAG
Found at i:281825 original size:183 final size:181
Alignment explanation
Indices: 281575--281926 Score: 535
Period size: 183 Copynumber: 1.9 Consensus size: 181
281565 AATCTTTTAT
* *
281575 CCTAATCAAAGGGCAGATTGAAAACACACAAATCTTACCTCGATCATGAGGCAGATTGAAGCATC
1 CCTAATCAAAGGGCAAATTGAAAACACACAAATCTTACCCCGATCATGAGGCAGATTGAAGCATC
* ** * * * *
281640 CAATCTTTTACCCTAATCATAGGGTAGATTGAAGACACACCAATCTCTTACCCTGATCATAGGG-
66 CAATCTTTTACCCTAATCAGAAAGCAGACTGAAGACACACCAATCTCTTACCCCGACCAT-GGGA
281704 TAGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGCAGATTTAAGTTAC
130 TAGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGCAGATTTAAGTTAC
* * * * *
281756 CCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGGGGCATATTGAAGCA
1 CCTAATCAAAGGGCAAATTGAAAACACA-CAA-ATCTTACCCCGATCATGAGGCAGATTGAAGCA
281821 TCCAATCTTTTACCCTAATCAGAAAGCAGACTGAAGACACACCAATCTCTTACCCCGACCATGGG
64 TCCAATCTTTTACCCTAATCAGAAAGCAGACTGAAGACACACCAATCTCTTACCCCGACCATGGG
*
281886 ATAGATTGAAGCATCCAATCTTTTACCCTAATCAGAGGGCA
129 ATAGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGCA
281927 TATTGAAGAC
Statistics
Matches: 153, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
181 25 0.16
182 6 0.04
183 122 0.80
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (181 bp):
CCTAATCAAAGGGCAAATTGAAAACACACAAATCTTACCCCGATCATGAGGCAGATTGAAGCATC
CAATCTTTTACCCTAATCAGAAAGCAGACTGAAGACACACCAATCTCTTACCCCGACCATGGGAT
AGATTGAAGCATCCAATCTTTTACCCTAACCAGAGGGCAGATTTAAGTTAC
Found at i:281829 original size:105 final size:105
Alignment explanation
Indices: 281647--281843 Score: 322
Period size: 105 Copynumber: 1.9 Consensus size: 105
281637 ATCCAATCTT
* * * * *
281647 TTACCCTAATCATAGGGTAGATTGAAGACACACCAATCTCTTACCCTGATCATAGGGTAGATTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATAGGGCAGATTGA
281712 AGCATCCAATCTTTTACCCTAACCAGAGGGCAGATTTAAG
66 AGCATCCAATCTTTTACCCTAACCAGAGGGCAGATTTAAG
* *
281752 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGGGGCATATTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATAGGGCAGATTGA
*
281817 AGCATCCAATCTTTTACCCTAATCAGA
66 AGCATCCAATCTTTTACCCTAACCAGA
281844 AAGCAGACTG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
105 84 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (105 bp):
TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATAGGGCAGATTGA
AGCATCCAATCTTTTACCCTAACCAGAGGGCAGATTTAAG
Found at i:282000 original size:77 final size:78
Alignment explanation
Indices: 281752--282051 Score: 431
Period size: 78 Copynumber: 3.9 Consensus size: 78
281742 CAGATTTAAG
* * *
281752 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGGGGCATATTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGGGACAGATTGA
281817 AGCATCCAATCTT
66 AGCATCCAATCTT
** * * *
281830 TTACCCTAATCAGAAAGCAGACTGAAGACACACCAATCTCTTACCCCGACCATGGGATAGATTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGGGACAGATTGA
281895 AGCATCCAATCTT
66 AGCATCCAATCTT
* * *
281908 TTACCCTAATCAGAGGGCATATTGAAGACACACCAATCTCTTA-CCCGACCATGAGACAGACTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGGGACAGATTGA
*
281972 AACATCCAATCTT
66 AGCATCCAATCTT
* * * * * *
281985 TTACCCTAATTAGAGGGCAAATTGAAGACACACTAATCTCTTACCCCAATCATGGGGCAAATTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGGGACAGATTGA
282050 AG
66 AG
282052 ATAGGATGCG
Statistics
Matches: 195, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
77 70 0.36
78 125 0.64
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (78 bp):
TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGGGACAGATTGA
AGCATCCAATCTT
Found at i:282039 original size:155 final size:156
Alignment explanation
Indices: 281752--282040 Score: 436
Period size: 155 Copynumber: 1.9 Consensus size: 156
281742 CAGATTTAAG
* * * * *
281752 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGATCATGGGGCATATTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGAGACAGACTGA
* * *
281817 AGCATCCAATCTTTTACCCTAATCAGAAAGCAGACTGAAGACACACCAATCTCTTACCCCGACCA
66 AACATCCAATCTTTTACCCTAATCAGAAAGCAAACTGAAGACACACCAATCTCTTACCCCAACCA
281882 TGGGATAGATTGAAGCATCCAATCTT
131 TGGGATAGATTGAAGCATCCAATCTT
*
281908 TTACCCTAATCAGAGGGCATATTGAAGACACACCAATCTCTTA-CCCGACCATGAGACAGACTGA
1 TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGAGACAGACTGA
* ** * * *
281972 AACATCCAATCTTTTACCCTAATTAGAGGGCAAATTGAAGACACACTAATCTCTTACCCCAATCA
66 AACATCCAATCTTTTACCCTAATCAGAAAGCAAACTGAAGACACACCAATCTCTTACCCCAACCA
282037 TGGG
131 TGGG
282041 GCAAATTGAA
Statistics
Matches: 118, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
155 76 0.64
156 42 0.36
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (156 bp):
TTACCCTAATCAGAGGGCAAATTGAAGACACACCAATCTCTTACCCCGACCATGAGACAGACTGA
AACATCCAATCTTTTACCCTAATCAGAAAGCAAACTGAAGACACACCAATCTCTTACCCCAACCA
TGGGATAGATTGAAGCATCCAATCTT
Found at i:285719 original size:39 final size:39
Alignment explanation
Indices: 285674--285750 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
285664 TACTTTAAAA
285674 TAAATAAGTAAACAAATAAATAGATAAGATGCCATGAAC
1 TAAATAAGTAAACAAATAAATAGATAAGATGCCATGAAC
285713 TAAATAAGTAAACAAATAAATAGATAAGATGCCATGAA
1 TAAATAAGTAAACAAATAAATAGATAAGATGCCATGAA
285751 ATTCCAGAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.57, C:0.09, G:0.13, T:0.21
Consensus pattern (39 bp):
TAAATAAGTAAACAAATAAATAGATAAGATGCCATGAAC
Found at i:291323 original size:10 final size:11
Alignment explanation
Indices: 291303--291328 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
291293 CTTATTCTTC
291303 TTTTTCTTTTT
1 TTTTTCTTTTT
291314 TTTTTCTTTTT
1 TTTTTCTTTTT
291325 TTTT
1 TTTT
291329 GTGTGTGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:292313 original size:29 final size:27
Alignment explanation
Indices: 292261--292324 Score: 71
Period size: 29 Copynumber: 2.4 Consensus size: 27
292251 ATAATTTAAA
*
292261 TATTTTA-TTTTAAAAAATGATAAT-T
1 TATTTTATTTTTAAAAAATAATAATAT
292286 TATTTTATTTTTAATAAAATAACTTAATAT
1 TATTTTATTTTTAA-AAAATAA--TAATAT
292316 T-TTTTATTT
1 TATTTTATTT
292325 AGCTACTTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
25 7 0.21
26 6 0.18
27 6 0.18
29 12 0.36
30 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (27 bp):
TATTTTATTTTTAAAAAATAATAATAT
Found at i:292620 original size:12 final size:12
Alignment explanation
Indices: 292603--292627 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
292593 AATACATTTA
292603 AAATATTAAAAC
1 AAATATTAAAAC
292615 AAATATTAAAAC
1 AAATATTAAAAC
292627 A
1 A
292628 TCAAACAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (12 bp):
AAATATTAAAAC
Found at i:292656 original size:41 final size:43
Alignment explanation
Indices: 292604--292691 Score: 117
Period size: 41 Copynumber: 2.1 Consensus size: 43
292594 ATACATTTAA
* *
292604 AATATTAAAACAAATATTAAAACATCAAACAAATT-AAAA-AC
1 AATATTAAAACAAATAGTAAAACAACAAACAAATTGAAAATAC
* * *
292645 AATATTAAAACAATTCGTAAAACAACAAATAAATTGAAAATAC
1 AATATTAAAACAAATAGTAAAACAACAAACAAATTGAAAATAC
292688 AATA
1 AATA
292692 AGCATCATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 30 0.75
42 4 0.10
43 6 0.15
ACGTcount: A:0.64, C:0.11, G:0.02, T:0.23
Consensus pattern (43 bp):
AATATTAAAACAAATAGTAAAACAACAAACAAATTGAAAATAC
Found at i:293371 original size:24 final size:23
Alignment explanation
Indices: 293332--293377 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
293322 TATTACAAGC
293332 AAAAAAAATTAGTATTAAAAATA
1 AAAAAAAATTAGTATTAAAAATA
* *
293355 AAAATAAAATTATTATTATAAAT
1 AAAA-AAAATTAGTATTAAAAAT
293378 TTGGACTGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (23 bp):
AAAAAAAATTAGTATTAAAAATA
Found at i:294495 original size:17 final size:17
Alignment explanation
Indices: 294473--294508 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
294463 ATCAGGATAT
294473 TATAATTTAAAGTTTAC
1 TATAATTTAAAGTTTAC
294490 TATAATTTAAAGTTTAC
1 TATAATTTAAAGTTTAC
294507 TA
1 TA
294509 GGTTTAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (17 bp):
TATAATTTAAAGTTTAC
Found at i:294851 original size:23 final size:23
Alignment explanation
Indices: 294821--294918 Score: 160
Period size: 23 Copynumber: 4.3 Consensus size: 23
294811 TATATCTATA
*
294821 CTTAAATATTAATGTGGTTTGTG
1 CTTAAATATTAATGTGATTTGTG
294844 CTTAAATATTAATGTGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
* *
294867 CTTAAATATTAATATGATTTATG
1 CTTAAATATTAATGTGATTTGTG
*
294890 ATTAAATATTAATGTGATTTGTG
1 CTTAAATATTAATGTGATTTGTG
294913 CTTAAA
1 CTTAAA
294919 GAATTAAGAT
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 68 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (23 bp):
CTTAAATATTAATGTGATTTGTG
Found at i:295044 original size:36 final size:36
Alignment explanation
Indices: 294998--295101 Score: 154
Period size: 36 Copynumber: 2.9 Consensus size: 36
294988 TATGAAAATG
* *
294998 AATATTTGGGTATATTCTTCATTCCATGTGATAGAA
1 AATATGTGGGTATATTCTTCATGCCATGTGATAGAA
* * *
295034 AATATGTGGGTTTATTCTTCATGCCATGTGACAGAG
1 AATATGTGGGTATATTCTTCATGCCATGTGATAGAA
*
295070 AATATGTGGGTATGTTCTTCATGCCATGTGAT
1 AATATGTGGGTATATTCTTCATGCCATGTGAT
295102 TGATTATATT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.26, C:0.12, G:0.22, T:0.39
Consensus pattern (36 bp):
AATATGTGGGTATATTCTTCATGCCATGTGATAGAA
Found at i:297283 original size:48 final size:48
Alignment explanation
Indices: 297217--297564 Score: 421
Period size: 48 Copynumber: 7.3 Consensus size: 48
297207 CTTATCAGAG
* * *
297217 TATAAACGTTTACTCTCATCAGCTTGCAGACGTTTACGCTCGTCAGCT
1 TATACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
* **** *
297265 T-TAACACGTTTACACTCATCAGCTTATTTACGTTTATGCTCGTCAGCT
1 TAT-ACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
** *
297313 TGCACACGTTTACGCTCATCAGCTTGCACACATTTACGCTCGTCAGCT
1 TATACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
* * * * *
297361 TATATATGTTT-CACTCATCAGCTTGCACACATTTACGCTCGTCAGCC
1 TATACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
** * * *
297408 TGCACACGTTTACGCTCGTCAGCCTGCACACGTTTACGCTCATCAGCT
1 TATACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
* * *
297456 TATATACGTTTACGCTCATCAACTTGCACACGTTTACGTTCGTCAGCT
1 TATACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
* *
297504 TATATACGTTTACGCTCGTCAGCTTGCACACGTTTACGCTCGTCAGCT
1 TATACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
*
297552 TATATACGTTTAC
1 TATACACGTTTAC
297565 TTAATTCAAC
Statistics
Matches: 255, Mismatches: 42, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
47 42 0.16
48 213 0.84
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.34
Consensus pattern (48 bp):
TATACACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCT
Found at i:297564 original size:24 final size:24
Alignment explanation
Indices: 297222--297552 Score: 358
Period size: 24 Copynumber: 13.8 Consensus size: 24
297212 CAGAGTATAA
* * *
297222 ACGTTTACTCTCATCAGCTTGCAG
1 ACGTTTACGCTCGTCAGCTTGCAC
**
297246 ACGTTTACGCTCGTCAGCTTTAAC
1 ACGTTTACGCTCGTCAGCTTGCAC
* * ****
297270 ACGTTTACACTCATCAGCTTATTT
1 ACGTTTACGCTCGTCAGCTTGCAC
*
297294 ACGTTTATGCTCGTCAGCTTGCAC
1 ACGTTTACGCTCGTCAGCTTGCAC
*
297318 ACGTTTACGCTCATCAGCTTGCAC
1 ACGTTTACGCTCGTCAGCTTGCAC
* ** *
297342 ACATTTACGCTCGTCAGCTTATAT
1 ACGTTTACGCTCGTCAGCTTGCAC
* * *
297366 ATGTTT-CACTCATCAGCTTGCAC
1 ACGTTTACGCTCGTCAGCTTGCAC
* *
297389 ACATTTACGCTCGTCAGCCTGCAC
1 ACGTTTACGCTCGTCAGCTTGCAC
*
297413 ACGTTTACGCTCGTCAGCCTGCAC
1 ACGTTTACGCTCGTCAGCTTGCAC
* ** *
297437 ACGTTTACGCTCATCAGCTTATAT
1 ACGTTTACGCTCGTCAGCTTGCAC
* *
297461 ACGTTTACGCTCATCAACTTGCAC
1 ACGTTTACGCTCGTCAGCTTGCAC
* ** *
297485 ACGTTTACGTTCGTCAGCTTATAT
1 ACGTTTACGCTCGTCAGCTTGCAC
297509 ACGTTTACGCTCGTCAGCTTGCAC
1 ACGTTTACGCTCGTCAGCTTGCAC
297533 ACGTTTACGCTCGTCAGCTT
1 ACGTTTACGCTCGTCAGCTT
297553 ATATACGTTT
Statistics
Matches: 249, Mismatches: 57, Indels: 2
0.81 0.19 0.01
Matches are distributed among these distances:
23 16 0.06
24 233 0.94
ACGTcount: A:0.21, C:0.30, G:0.16, T:0.33
Consensus pattern (24 bp):
ACGTTTACGCTCGTCAGCTTGCAC
Found at i:297564 original size:72 final size:72
Alignment explanation
Indices: 297217--297552 Score: 422
Period size: 72 Copynumber: 4.7 Consensus size: 72
297207 CTTATCAGAG
* * * ** *
297217 TATAAACGTTTACTCTCATCAGCTTGCAGACGTTTACGCTCGTCAGCTTTAACACGTTTACACTC
1 TATATACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCTTGCACACGTTTACGCTC
*
297282 ATCAGCT
66 GTCAGCT
* * * * *
297289 TATTTACGTTTATGCTCGTCAGCTTGCACACGTTTACGCTCATCAGCTTGCACACATTTACGCTC
1 TATATACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCTTGCACACGTTTACGCTC
297354 GTCAGCT
66 GTCAGCT
* * * *
297361 TATATATGTTT-CACTCATCAGCTTGCACACATTTACGCTCGTCAGCCTGCACACGTTTACGCTC
1 TATATACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCTTGCACACGTTTACGCTC
*
297425 GTCAGCC
66 GTCAGCT
** * ** * * * *
297432 TGCACACGTTTACGCTCATCAGCTTATATACGTTTACGCTCATCAACTTGCACACGTTTACGTTC
1 TATATACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCTTGCACACGTTTACGCTC
297497 GTCAGCT
66 GTCAGCT
*
297504 TATATACGTTTACGCTCGTCAGCTTGCACACGTTTACGCTCGTCAGCTT
1 TATATACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCTT
297553 ATATACGTTT
Statistics
Matches: 218, Mismatches: 45, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
71 59 0.27
72 159 0.73
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.33
Consensus pattern (72 bp):
TATATACGTTTACGCTCATCAGCTTGCACACGTTTACGCTCGTCAGCTTGCACACGTTTACGCTC
GTCAGCT
Found at i:299342 original size:23 final size:23
Alignment explanation
Indices: 299269--299510 Score: 233
Period size: 23 Copynumber: 10.4 Consensus size: 23
299259 TATAAGGAAC
* *
299269 AAACAGAGAGTAC-CAAAGTACT
1 AAACAGAGAGCACACAAAGTGCT
*
299291 -AACAGAGAGCACA-TAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
299312 GGGCAACAGAGAGCACACATAGTGCT
1 ---AAACAGAGAGCACACAAAGTGCT
* * **
299338 AAACAGAGAGTACAAAAAGAACT
1 AAACAGAGAGCACACAAAGTGCT
299361 AATA-AGAGAGCACACAAAGTGCT
1 AA-ACAGAGAGCACACAAAGTGCT
*
299384 AATCAGAGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
299407 AATCAGAGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
*
299430 AATCAGAGAGCACACAAAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* * *
299453 AATCAGAGAGCACATACAGTGCT
1 AAACAGAGAGCACACAAAGTGCT
* *
299476 AATAACAGAGAGCACGA-GACGTGCT
1 -A-AACAGAGAGCAC-ACAAAGTGCT
299501 AAACAGAGAG
1 AAACAGAGAG
299511 TGCGCTAGTG
Statistics
Matches: 187, Mismatches: 22, Indels: 21
0.81 0.10 0.09
Matches are distributed among these distances:
21 17 0.09
23 131 0.70
24 3 0.02
25 29 0.16
26 7 0.04
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.12
Consensus pattern (23 bp):
AAACAGAGAGCACACAAAGTGCT
Done.