genome.fa.s14134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014134.1 Kokia drynarioides strain JFW-HI SEQ_129167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115649

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747--789	17	2.5	17	92	0	68	41	0	2	55	1.12
794--836	19	2.2	20	83	4	52	25	6	9	58	1.54
2733--2813	17	4.6	17	80	10	83	43	2	2	51	1.28
3498--3616	3	39.3	3	71	11	64	54	3	3	38	1.34
3477--3598	24	4.7	24	72	18	68	52	3	4	40	1.37
3528--3603	31	2.5	31	82	6	84	52	5	3	38	1.43
4532--4631	29	3.4	29	80	10	105	36	29	3	32	1.73
4532--4627	30	3.2	29	81	10	113	36	29	3	31	1.73
13554--14250	194	3.5	194	84	2	829	35	18	23	22	1.96
14150--14220	37	1.9	37	88	0	106	39	21	21	18	1.93
13878--14259	206	1.9	206	85	0	530	35	18	23	23	1.96
14595--14637	17	2.5	17	92	0	68	41	0	2	55	1.12
14651--14699	20	2.5	20	77	9	57	53	18	6	22	1.66
15322--15446	3	41.3	3	72	1	88	56	5	4	32	1.43
15332--15436	36	2.8	36	84	4	129	55	6	5	32	1.50
15322--15446	24	5.2	24	71	0	97	56	5	4	32	1.43
16592--16913	30	11.0	29	75	13	275	38	24	1	35	1.66
16600--16913	59	5.4	58	82	10	340	38	24	1	35	1.66
17913--18026	56	2.0	56	100	0	228	42	13	7	36	1.71
22478--22523	16	2.9	16	78	12	51	76	2	4	17	1.06
22477--22537	22	2.8	22	82	7	63	75	4	4	14	1.14
23323--23366	19	2.3	19	84	7	54	59	2	0	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26782--26842	29	2.2	29	82	5	72	68	3	1	26	1.14
27964--27995	11	2.8	12	90	9	50	15	3	9	71	1.24
28138--28345	101	2.1	101	97	0	389	36	22	20	21	1.95
30186--30239	19	2.7	20	85	8	74	37	0	3	59	1.15
31692--31883	96	2.0	96	97	0	366	42	10	20	26	1.85
33398--33474	20	3.9	21	84	10	108	6	3	20	68	1.28
33411--33483	18	3.9	18	85	10	87	6	4	20	68	1.30
33398--33483	20	4.4	20	80	15	101	6	3	22	67	1.30
37913--38006	25	3.8	25	75	0	89	38	25	17	19	1.92
37911--38006	50	1.9	50	91	0	156	37	27	16	18	1.92
39959--40007	6	8.3	6	82	13	66	44	0	4	51	1.20
39932--40009	17	4.6	17	85	4	86	44	1	6	47	1.36
40223--40261	19	2.1	19	95	0	69	33	41	15	10	1.81
41773--41840	17	3.9	17	79	11	75	44	2	1	51	1.25
41778--41843	6	11.2	6	72	19	50	46	3	1	48	1.26
41778--41843	11	5.6	12	72	20	50	46	3	1	48	1.26
41841--41870	14	2.1	15	93	6	53	53	20	6	20	1.67
43642--44017	30	12.7	29	79	10	354	34	29	3	32	1.75
43641--43987	59	5.9	59	83	6	371	34	29	3	33	1.73
43642--44030	59	6.6	57	80	11	351	33	29	4	32	1.76
44052--44177	63	2.0	63	92	0	207	30	27	10	31	1.90
64402--64487	43	2.0	43	97	0	163	20	8	34	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66264--66339	30	2.5	30	85	12	95	34	7	22	35	1.83
83214--83264	11	4.5	12	76	18	56	50	0	0	49	1.00
86712--86765	19	2.9	18	79	20	58	42	1	1	53	1.22
86728--86774	17	2.8	17	86	0	67	46	2	2	48	1.25
88545--88719	30	5.9	30	78	9	157	39	26	1	32	1.67
88545--88719	29	5.9	30	78	9	121	39	26	1	32	1.67
88545--88720	58	3.0	57	83	9	185	39	27	1	31	1.67
88596--88720	29	4.3	28	84	8	144	37	31	0	30	1.63
88641--88734	28	3.3	27	84	10	109	40	30	2	26	1.68
88818--88879	28	2.2	28	91	0	97	33	32	9	24	1.88
88611--88851	58	4.1	59	73	6	204	36	26	4	33	1.76
92089--92123	12	2.8	13	91	4	54	51	2	0	45	1.16
92293--92318	11	2.4	11	100	0	52	50	0	0	50	1.00
97266--97307	21	2.0	21	90	0	66	19	0	9	71	1.13
97537--97570	12	3.0	11	87	8	50	29	0	2	67	1.05
98178--98224	22	2.0	23	84	15	62	34	0	0	65	0.93
98211--98264	28	1.9	28	85	7	74	48	3	0	48	1.19
105288--105369	37	2.2	37	100	0	164	39	23	15	21	1.92
113449--113521	31	2.3	31	86	9	103	34	1	8	56	1.38

Tables:   1

The End!