Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014136.1 Kokia drynarioides strain JFW-HI SEQ_129169, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 716

Length: 1194
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29


Found at i:158 original size:45 final size:45

Alignment explanation


    Indices: 34--159  Score: 180
    Period size: 45  Copynumber: 2.8  Consensus size: 45

         24 AGTATCGCGA

                        * *  *           **      *       
         34 TGGCTCGTCAAACTCAGCCTGATATCCTTCCCTTGAGTATTGCGG
          1 TGGCTCGTCAAATTGAGGCTGATATCCTTAGCTTGAGCATTGCGG

                    *                                    
         79 TGGCTCGTTAAATTGAGGCTGATATCCTTAGCTTGAGCATTGCGG
          1 TGGCTCGTCAAATTGAGGCTGATATCCTTAGCTTGAGCATTGCGG

                                         *      
        124 TGGCTCGTCAAATTGAGGCTGATATCCTTGGCTTGA
          1 TGGCTCGTCAAATTGAGGCTGATATCCTTAGCTTGA

        160 TGAGCAATGC


Statistics
Matches: 72,  Mismatches: 9, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  45   72  1.00

ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33


Consensus pattern (45 bp):   
TGGCTCGTCAAATTGAGGCTGATATCCTTAGCTTGAGCATTGCGG
Done.