Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014139.1 Kokia drynarioides strain JFW-HI SEQ_129172, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7629
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.37

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:4606 original size:17 final size:17

Alignment explanation


    Indices: 4584--4617  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       4574 AGGCTGATAC

                             
       4584 TTAAATTGAGTTTCTTT
          1 TTAAATTGAGTTTCTTT

                   * *       
       4601 TTAAATTTATTTTCTTT
          1 TTAAATTGAGTTTCTTT

       4618 AAATTCTTAG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65


Consensus pattern (17 bp):   
TTAAATTGAGTTTCTTT

Found at i:7150 original size:23 final size:23

Alignment explanation


    Indices: 7118--7163  Score: 65
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       7108 CTGACGTGGC

                 *    *      *     
       7118 ATCCAGTCAGTAGCTTCTAGAAG
          1 ATCCAATCAGCAGCTTCCAGAAG

                                   
       7141 ATCCAATCAGCAGCTTCCAGAAG
          1 ATCCAATCAGCAGCTTCCAGAAG

       7164 GTCTAGTCAA


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22


Consensus pattern (23 bp):   
ATCCAATCAGCAGCTTCCAGAAG
Done.