Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014140.1 Kokia drynarioides strain JFW-HI SEQ_129173, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 798

Length: 1331
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.29


Found at i:850 original size:15 final size:17

Alignment explanation


    Indices: 821--863  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 17

        811 TTTATTAACC

                             
        821 ATAAATATATAATAATA
          1 ATAAATATATAATAATA

                           *   
        838 ATAAATATTATAATATTAA
          1 ATAAATA-TATAATAAT-A

                   
        857 ATAAATA
          1 ATAAATA

        864 AATGGAAATT


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  17    7  0.30
  18    8  0.35
  19    8  0.35

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (17 bp):   
ATAAATATATAATAATA
Done.