genome.fa.s14141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014141.1 Kokia drynarioides strain JFW-HI SEQ_129174, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  191733

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036--1162	66	1.9	66	96	0	236	20	11	18	49	1.78
5214--5251	20	1.9	20	88	0	58	44	2	5	47	1.39
5213--5261	20	2.5	20	80	3	55	40	2	6	51	1.38
6479--6517	5	7.6	5	94	2	60	35	17	5	41	1.72
12906--13109	108	1.9	108	88	3	311	28	19	19	32	1.96
13315--13413	49	2.0	49	100	0	198	42	19	8	30	1.80
21735--21769	18	1.9	18	88	11	54	68	8	0	22	1.16
23290--23339	25	2.0	25	88	4	73	56	0	0	44	0.99
24581--24649	29	2.4	29	82	4	86	42	10	4	43	1.58
24962--24997	7	5.6	7	84	15	51	27	0	0	72	0.85
25034--25074	22	1.9	21	90	5	64	24	0	0	75	0.80
25041--25135	46	2.0	46	90	6	147	37	0	3	58	1.14
30741--30797	25	2.3	24	82	8	62	33	0	1	64	1.04
31090--31120	16	1.9	16	93	0	53	29	12	0	58	1.35
33934--33977	21	2.0	22	82	8	54	11	27	31	29	1.91
48363--48485	9	12.8	9	70	19	63	60	4	0	33	1.23
48428--48487	22	2.8	21	85	9	77	63	6	0	30	1.20
48776--48946	81	2.1	81	89	4	265	42	1	12	44	1.49
53741--53799	27	2.1	29	84	12	79	35	0	0	64	0.94
54620--54660	22	1.9	22	90	5	66	68	0	4	26	1.10
55691--55720	15	2.1	14	93	6	51	63	0	0	36	0.95
56151--56189	17	2.4	17	82	4	53	64	0	7	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56151--56208	20	3.2	18	76	11	57	63	0	6	29	1.20
70389--70692	153	2.0	153	98	0	581	21	29	16	33	1.95
97789--97821	16	2.1	16	88	11	50	27	0	3	69	1.03
106628--106659	2	16.0	2	100	0	64	50	0	0	50	1.00
109635--109908	29	9.2	29	74	10	205	37	27	1	33	1.66
109632--109917	59	4.8	58	77	10	240	36	26	1	35	1.66
109636--109917	119	2.4	120	81	7	315	37	26	1	34	1.66
109870--110062	58	3.3	58	73	10	160	31	28	7	32	1.85
109636--109923	88	3.2	88	77	11	241	36	27	1	34	1.66
112123--112160	2	19.0	2	100	0	76	50	0	0	50	1.00
112323--112356	18	1.9	17	88	5	50	47	0	0	52	1.00
113700--113745	20	2.3	20	84	0	56	41	2	4	52	1.33
115022--115055	18	1.9	18	94	5	61	50	0	2	47	1.16
115063--115113	18	2.9	17	80	8	57	70	1	1	25	1.08
115199--115229	16	1.9	16	93	0	53	35	6	9	48	1.62
117149--117198	18	2.9	17	85	5	64	40	2	0	58	1.10
124818--124849	13	2.4	13	94	5	55	34	0	15	50	1.45
127263--127308	22	2.0	22	84	12	58	45	0	6	47	1.28
133285--133450	84	2.0	84	92	0	278	23	36	4	35	1.76
133674--134122	228	2.0	219	88	5	659	22	37	13	26	1.91
139722--139746	13	1.9	13	100	0	50	32	20	24	24	1.98
141581--141613	2	17.0	2	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143032--143177	38	3.8	38	73	10	109	22	13	7	56	1.63
143150--143194	20	2.2	20	80	0	54	22	17	6	53	1.67
143176--143219	21	2.1	21	86	0	61	22	18	0	59	1.38
144493--144532	19	2.1	19	86	9	55	67	10	2	20	1.31
146206--146283	40	2.0	40	82	5	95	30	19	3	46	1.68
148231--148266	18	2.1	17	89	5	54	27	0	0	72	0.85
164704--164813	54	2.0	54	92	0	184	26	15	24	33	1.95
165507--165655	75	2.0	75	91	0	244	26	22	20	30	1.98
166688--166740	26	2.0	26	85	7	72	52	0	7	39	1.30
170583--170622	5	8.0	5	100	0	80	40	0	40	20	1.52
185004--185072	12	5.8	12	74	3	50	69	20	4	5	1.27
185004--185080	23	3.3	24	78	5	77	70	18	3	7	1.28
185017--185132	12	10.3	12	69	15	61	71	18	4	6	1.23
185063--185132	22	3.2	22	75	17	58	72	18	2	5	1.17
190562--190618	12	4.7	12	76	4	60	68	15	7	8	1.37
190558--190607	24	2.1	24	92	0	82	74	14	6	6	1.21
190562--190618	13	4.6	13	74	10	57	68	15	7	8	1.37
190627--190665	21	1.9	20	89	5	60	76	7	2	12	1.09
190632--190666	18	1.9	18	88	0	52	77	8	2	11	1.10
190615--190684	23	3.1	23	80	16	83	72	15	2	8	1.20

Tables:   1

The End!