Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014147.1 Kokia drynarioides strain JFW-HI SEQ_129180, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1729
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.30

Warning! 139 characters in sequence are not A, C, G, or T


Found at i:1318 original size:45 final size:45

Alignment explanation


    Indices: 1267--1432  Score: 226
    Period size: 45  Copynumber: 3.7  Consensus size: 45

       1257 ATCGCGATGC

                       *  *  *         * *     *          
       1267 CTCGTCAAACTCAGCCTAATATCCTT-CCCTATAGTATTGCGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTA-AGCATTGCGGTGG

                     *                     *            *
       1312 CTCGTCAAATTGAGGCTGATATCCTTGGCTTGAGCATTGCGGTGA
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTAAGCATTGCGGTGG

                     *                                   
       1357 CTCGTCAAATTGAGGCTGATATCCTTGGCTTAAGCATTGCGGTGG
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTTAAGCATTGCGGTGG

                                           
       1402 CTCGTCAAACTGAGGCTGATATCCTTGGCTT
          1 CTCGTCAAACTGAGGCTGATATCCTTGGCTT

       1433 GATGAGCTAT


Statistics
Matches: 108,  Mismatches: 12, Indels: 2
        0.89            0.10        0.02

Matches are distributed among these distances:
  45  106  0.98
  46    2  0.02

ACGTcount: A:0.20, C:0.23, G:0.25, T:0.31


Consensus pattern (45 bp):   
CTCGTCAAACTGAGGCTGATATCCTTGGCTTAAGCATTGCGGTGG
Done.