genome.fa.s14148.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014148.1 Kokia drynarioides strain JFW-HI SEQ_129181, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  216257

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136--210	4	18.2	4	77	10	71	0	36	0	64	0.94
136--211	17	4.6	17	77	11	70	0	36	0	63	0.95
149--211	13	4.9	13	81	11	85	0	34	0	65	0.93
135--210	9	8.7	9	76	20	72	0	36	0	63	0.95
1291--1324	17	2.0	17	88	0	50	52	0	0	47	1.00
10572--10613	21	2.0	21	100	0	84	33	23	9	33	1.87
11272--11321	23	2.2	22	82	3	55	50	0	4	46	1.20
11524--11571	17	2.7	18	74	6	53	52	0	4	43	1.20
13466--13518	21	2.5	21	88	11	74	32	26	13	28	1.93
44091--44156	26	2.5	25	87	7	87	39	27	18	15	1.90
46907--46947	6	6.8	6	100	0	82	68	0	0	31	0.90
50613--50768	76	2.1	76	98	0	303	27	13	18	40	1.88
60277--60316	20	2.0	20	85	5	53	37	20	12	30	1.89
68792--68816	11	2.3	11	100	0	50	52	8	40	0	1.31
70470--70997	261	2.0	261	97	0	993	43	7	10	38	1.67
75005--75058	25	2.2	25	78	15	60	51	1	0	46	1.11
78554--78725	81	2.1	81	93	2	292	30	23	12	33	1.91
78954--78997	18	2.4	18	84	0	52	25	38	18	18	1.92
82304--82357	25	2.2	25	78	15	60	51	1	0	46	1.11
91651--91719	15	4.7	15	71	10	52	20	14	4	60	1.50
91750--91811	21	2.9	22	73	4	72	24	9	6	59	1.52
92455--92531	3	26.0	3	97	2	147	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103313--103355	20	2.0	22	91	8	72	27	0	6	65	1.18
113237--113286	26	1.9	26	84	8	66	50	0	0	50	1.00
113262--113302	18	2.3	18	82	0	55	43	0	0	56	0.99
113258--113301	21	2.2	20	91	4	70	47	0	0	52	1.00
114800--114826	13	2.1	13	100	0	54	40	7	22	29	1.81
120384--120418	18	1.9	18	94	0	61	42	0	0	57	0.99
121473--121501	15	1.9	15	100	0	58	51	27	0	20	1.47
121966--122140	28	6.4	26	76	9	127	27	21	8	43	1.80
121966--122110	56	2.6	55	83	5	177	25	22	8	43	1.81
125723--125782	28	2.1	28	87	0	84	46	26	1	25	1.62
126198--126244	6	8.0	6	80	4	51	10	29	19	40	1.85
129584--129791	80	2.6	80	88	3	312	20	19	25	34	1.96
138098--138125	5	5.6	5	100	0	56	64	0	0	35	0.94
138092--138679	144	4.0	145	72	17	409	50	13	1	34	1.49
143830--143874	20	2.3	19	82	17	56	73	6	6	13	1.24
143865--143987	23	5.6	23	69	16	66	65	18	8	7	1.42
143876--143998	22	5.8	21	77	10	106	63	21	8	6	1.46
143882--144000	42	2.8	42	76	3	123	63	21	8	6	1.46
145531--145612	25	3.2	25	65	21	60	45	12	7	35	1.69
145735--145803	9	6.9	10	74	25	58	47	0	0	52	1.00
145735--145832	40	2.5	40	89	0	151	50	2	0	47	1.12
145735--145809	20	3.8	20	72	13	73	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157570--157618	25	2.0	25	83	0	62	12	12	2	73	1.18
171370--171439	33	2.1	33	89	0	104	55	1	2	40	1.23
172264--172344	31	2.6	31	82	2	99	45	9	14	29	1.77
172286--172401	31	3.9	30	71	18	98	44	11	17	26	1.82
176251--176290	4	10.0	4	94	0	71	50	22	0	27	1.50
184994--185056	31	2.1	30	84	3	81	26	19	7	46	1.77
186200--186237	18	2.1	18	85	9	51	57	15	2	23	1.51
186377--186449	34	2.1	34	90	5	112	28	13	0	57	1.37
194739--194763	13	1.9	13	100	0	50	36	0	0	64	0.94
199567--199824	30	8.6	29	76	9	157	32	17	4	44	1.68
199566--199824	60	4.3	58	80	6	241	32	18	4	44	1.69
206778--206819	18	2.3	18	95	0	75	40	16	16	26	1.90
207789--207832	23	2.0	22	86	4	61	45	15	0	38	1.47
208826--208855	15	2.0	15	100	0	60	40	20	6	33	1.78
214893--215305	39	10.7	38	74	6	283	33	24	16	25	1.96
214969--215249	155	1.8	154	88	0	436	33	24	15	26	1.95
214893--215305	77	5.3	76	83	4	425	33	24	16	25	1.96
215238--215330	39	2.3	40	90	1	143	33	29	13	23	1.94
215238--215344	39	2.7	39	84	7	135	33	27	17	21	1.96

Tables:   1

The End!