Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014149.1 Kokia drynarioides strain JFW-HI SEQ_129182, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6297
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.34

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:2204 original size:2 final size:2

Alignment explanation


    Indices: 2197--2221  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       2187 ATTTTCTTTG

                                                 
       2197 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       2222 GGAAGACAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:4708 original size:3 final size:3

Alignment explanation


    Indices: 4700--4727  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       4690 AAATGGCTAG

                                                 
       4700 CAA CAA CAA CAA CAA CAA CAA CAA CAA C
          1 CAA CAA CAA CAA CAA CAA CAA CAA CAA C

       4728 CTACCACCAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAA

Done.