genome.fa.s14151.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014151.1 Kokia drynarioides strain JFW-HI SEQ_129184, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  213683

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1443--1475	14	2.3	15	89	5	50	39	6	0	54	1.25
1996--2036	21	2.0	22	85	9	59	46	2	0	51	1.14
8221--8277	29	1.9	30	89	3	89	29	8	15	45	1.77
16092--16143	20	2.7	20	91	5	81	32	0	7	59	1.26
19170--19217	22	2.2	22	84	0	60	20	6	4	68	1.28
35523--35566	18	2.6	17	86	10	63	77	9	0	13	0.99
51580--51612	17	1.9	17	88	11	50	60	0	0	39	0.97
53792--53951	80	2.0	80	95	0	284	34	18	16	30	1.93
55139--55202	2	32.0	2	100	0	128	50	0	0	50	1.00
56565--56629	32	2.0	33	84	3	87	52	1	3	43	1.26
66554--66614	29	2.1	29	96	0	113	32	16	21	29	1.95
78076--78128	22	2.4	22	83	0	61	54	0	1	43	1.11
78157--78184	6	4.7	6	100	0	56	85	0	0	14	0.59
79008--79039	17	1.9	17	93	6	57	31	0	18	50	1.48
89252--89315	23	2.7	23	95	2	110	45	7	0	46	1.32
90721--90912	96	2.0	96	89	0	294	36	16	18	27	1.93
91185--91283	29	3.4	29	86	4	130	36	0	23	40	1.55
92163--92412	111	2.2	112	82	10	298	35	14	13	37	1.85
92757--92909	56	2.7	55	80	4	162	41	13	20	24	1.89
93478--93547	23	3.0	23	81	6	88	27	10	20	42	1.83
98819--98883	19	3.5	19	70	17	55	41	0	1	56	1.08
100010--100052	16	2.6	16	77	3	50	53	0	11	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100197--100362	27	6.1	26	67	14	86	51	2	2	43	1.27
100212--100363	55	2.7	57	84	5	202	51	2	2	42	1.29
100212--100380	55	3.1	55	82	7	191	51	2	2	43	1.29
111921--111951	14	2.2	14	94	0	53	45	6	19	29	1.75
116792--116855	22	2.9	22	88	0	101	45	4	7	42	1.54
116853--116929	37	2.1	37	95	4	138	44	6	5	44	1.52
117480--117547	31	2.2	30	80	10	84	41	14	10	33	1.80
117492--117561	31	2.3	31	92	2	115	34	15	10	40	1.81
118313--118345	16	2.0	17	94	5	59	60	21	6	12	1.53
122575--122633	31	1.9	31	89	6	93	33	18	25	22	1.96
125829--125882	19	2.6	21	83	16	69	70	1	0	27	0.98
133185--133228	2	22.0	2	100	0	88	50	0	0	50	1.00
133413--133463	26	1.9	27	88	4	77	56	3	0	39	1.18
134676--134742	31	2.2	31	83	5	82	29	10	10	49	1.70
146344--146388	6	7.5	6	94	0	81	17	46	15	20	1.84
146748--146968	56	3.9	55	80	10	180	28	17	15	38	1.90
146835--146968	59	2.3	58	84	8	173	24	17	19	38	1.93
147062--147187	58	2.2	57	79	12	132	23	17	16	42	1.88
147938--147987	26	2.0	26	88	4	75	66	0	0	34	0.92
150898--150970	12	5.8	12	77	15	67	52	0	8	39	1.32
150921--150971	11	4.4	12	82	7	70	47	0	13	39	1.43
150921--150971	23	2.2	23	100	0	102	47	0	13	39	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151213--151273	22	2.8	22	89	0	95	44	32	3	19	1.67
151208--151285	22	3.5	22	80	5	86	39	39	2	17	1.64
153585--153621	18	2.1	18	89	0	56	48	0	27	24	1.51
154424--154597	23	7.5	23	75	10	131	43	20	24	12	1.86
154424--154563	69	2.0	68	87	8	203	43	20	23	12	1.86
157524--157566	19	2.3	19	80	8	52	18	6	6	67	1.37
157583--157607	13	1.9	13	100	0	50	36	8	0	56	1.29
159502--159761	61	4.3	59	77	8	204	38	13	17	30	1.88
159601--159761	59	2.7	59	84	6	200	38	14	16	29	1.89
162164--162221	31	1.9	30	86	6	82	37	1	8	51	1.43
162168--162255	31	2.9	30	80	10	81	39	3	7	48	1.49
162366--162439	30	2.5	28	82	8	76	55	14	2	27	1.53
163004--163045	21	2.0	22	86	13	61	26	9	7	57	1.56
170748--170793	24	1.9	24	82	8	58	41	6	0	52	1.27
177434--177483	26	1.9	25	84	8	64	30	0	2	68	1.01
179841--179911	23	3.0	23	83	4	97	25	11	18	45	1.82
179849--179926	23	3.3	23	73	18	72	30	11	17	39	1.86
180296--180392	40	2.5	40	81	3	108	29	11	19	39	1.87
181407--181607	93	2.1	94	83	7	257	34	14	13	37	1.86
183529--183576	2	24.0	2	100	0	96	50	0	0	50	1.00
185637--185694	23	2.5	23	88	0	89	29	24	22	24	1.99
189648--189820	23	7.4	23	75	8	118	41	20	23	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196202--196243	22	2.0	22	85	4	59	54	0	0	45	0.99
196191--196240	19	2.5	19	80	9	55	52	4	0	44	1.20
196959--197029	17	4.2	17	77	0	79	52	4	4	39	1.41
196969--197035	34	2.0	34	90	0	107	55	7	4	32	1.48
197395--197941	206	2.7	200	83	3	587	22	22	19	36	1.95
197469--197941	201	2.3	202	83	3	556	23	22	19	35	1.96
198038--198322	39	7.3	39	68	15	149	25	16	30	27	1.97
198039--198373	78	4.3	77	82	6	363	25	16	30	26	1.97
198038--198373	156	2.1	156	83	5	412	25	16	30	26	1.97
198227--198361	39	3.5	39	70	11	132	28	18	31	22	1.97
200030--200091	19	3.3	17	74	17	52	0	17	1	80	0.79
200030--200096	11	5.9	11	76	22	59	0	17	1	80	0.79
203417--203466	25	2.0	25	96	3	93	32	26	12	30	1.92
205679--205753	29	2.6	30	73	12	75	38	1	30	29	1.66
207583--207653	17	4.2	17	77	0	79	52	4	4	39	1.41
207593--207659	34	2.0	34	90	0	107	55	7	4	32	1.48
208344--210817	411	6.0	412	94	1	4242	39	15	14	29	1.88
213383--213424	15	2.5	17	88	11	61	61	0	38	0	0.96

Tables:   1

The End!