genome.fa.s14154.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014154.1 Kokia drynarioides strain JFW-HI SEQ_129187, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160074

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2530--2737	90	2.3	91	83	3	251	35	7	15	41	1.76
5276--5316	18	2.3	18	95	0	73	41	2	2	53	1.27
13290--13345	18	3.1	18	94	0	94	42	3	3	50	1.37
15058--15431	58	6.4	58	78	7	289	36	25	3	34	1.74
15065--15431	30	12.6	28	76	10	217	36	25	3	33	1.74
21255--21343	42	2.1	42	89	0	142	39	14	23	22	1.91
27826--28087	78	3.4	78	79	2	267	25	29	19	25	1.98
27828--28165	39	8.7	39	67	13	124	25	28	18	26	1.98
28061--28247	77	2.4	77	76	7	173	25	28	19	27	1.99
30544--30875	29	11.3	29	81	7	269	36	25	3	33	1.75
30549--30875	59	5.6	58	79	8	295	37	25	3	33	1.75
30893--30954	29	2.1	29	84	3	79	37	16	4	41	1.69
39286--39341	26	2.2	26	96	0	103	62	7	5	25	1.42
42804--42871	31	2.2	31	84	5	84	50	5	1	42	1.35
45442--45478	17	2.1	18	90	5	58	27	0	2	70	1.01
47464--47505	18	2.5	17	81	18	52	52	0	7	40	1.29
48177--48201	13	1.9	13	100	0	50	72	0	0	28	0.86
53243--53310	29	2.3	29	100	0	136	45	2	2	48	1.32
53243--53327	29	2.9	29	89	0	80	49	4	2	43	1.36
58501--59332	414	2.0	414	90	1	1301	38	17	17	26	1.92
61244--61290	24	1.9	25	86	4	69	46	4	17	31	1.67
65149--65590	192	2.3	191	79	6	466	25	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67863--67928	29	2.3	29	78	5	80	60	6	4	28	1.40
68262--68439	99	1.8	99	84	10	251	66	7	5	20	1.35
71941--72186	52	4.8	52	85	5	313	28	14	25	31	1.94
72768--72845	21	3.6	21	87	5	102	23	5	29	42	1.75
72921--72981	21	2.9	22	73	7	63	36	16	21	26	1.94
78974--79087	49	2.3	49	84	1	138	19	14	21	44	1.85
79002--79558	49	11.4	49	72	5	268	20	18	16	44	1.87
79023--79375	146	2.4	147	82	5	394	19	18	16	45	1.86
79023--79557	98	5.5	98	76	4	400	20	18	17	44	1.87
90888--90946	18	3.3	18	74	11	50	67	0	5	27	1.11
90952--91127	92	1.9	93	83	9	234	64	8	5	21	1.41
92280--92307	7	4.0	7	100	0	56	14	0	42	42	1.45
93783--93817	16	2.3	15	90	9	54	2	22	0	74	0.95
93781--93830	18	2.8	18	79	11	57	2	20	2	76	0.99
96495--96529	17	2.1	17	94	0	61	51	0	25	22	1.48
96755--96793	21	1.9	21	94	5	71	66	5	12	15	1.41
103753--103779	2	13.5	2	100	0	54	51	0	0	48	1.00
106063--106134	37	1.9	38	85	2	101	33	26	16	23	1.96
106059--106157	41	2.6	38	80	6	110	31	27	18	23	1.97
108819--108875	19	3.1	19	82	5	73	35	26	3	35	1.74
109164--109289	45	2.8	45	84	3	164	29	23	17	30	1.97
112017--112137	27	4.4	27	79	1	89	30	14	24	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112005--112136	54	2.4	54	79	1	138	31	12	23	32	1.92
112119--112202	23	3.6	23	91	1	141	22	21	27	28	1.99
119112--119469	178	2.0	178	97	0	680	25	14	20	40	1.89
126411--126451	12	3.5	12	75	18	50	58	4	4	31	1.40
126410--126456	23	2.0	23	100	0	94	61	4	4	29	1.34
127023--127064	21	2.0	22	86	13	61	47	16	7	28	1.73
127481--127619	39	3.6	39	78	3	163	25	19	32	23	1.97
127481--127636	39	4.0	39	78	12	158	25	21	30	23	1.99
127651--128028	39	9.7	39	72	1	254	25	19	30	24	1.98
127502--127777	143	1.9	143	84	0	363	25	20	28	25	1.99
127660--127977	117	2.7	118	84	1	408	25	20	30	23	1.98
127662--128028	117	3.1	116	79	3	378	25	19	31	24	1.98
139857--140236	30	13.1	28	73	14	163	35	2	23	38	1.68
139912--140236	30	11.2	30	78	11	218	34	2	24	38	1.69
141909--141990	17	5.0	16	70	12	51	56	6	2	35	1.37
141907--141990	34	2.5	33	83	7	107	55	5	2	35	1.37
141945--141988	16	2.8	16	76	13	54	56	4	0	38	1.20
143441--143586	73	2.0	73	98	0	283	36	20	17	26	1.94
148611--148654	23	1.9	23	86	9	63	52	0	4	43	1.22
150819--150866	24	1.9	24	87	8	69	35	4	2	58	1.29
155441--155508	27	2.5	27	81	11	68	36	2	1	58	1.22
157088--157156	35	2.0	35	91	2	113	40	8	21	28	1.83

Tables:   1

The End!