genome.fa.s14160.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014160.1 Kokia drynarioides strain JFW-HI SEQ_129193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156537

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086--1168	6	14.3	6	73	12	66	56	2	1	39	1.20
1086--1176	17	5.3	17	82	2	119	56	2	1	40	1.19
1107--1162	11	4.8	12	80	8	62	60	3	0	35	1.14
1106--1151	23	2.0	24	91	4	76	58	2	0	39	1.10
1107--1168	23	2.7	23	82	12	74	59	3	0	37	1.13
1928--1956	15	1.9	15	100	0	58	34	20	27	17	1.95
5431--5467	3	12.3	3	100	0	74	64	0	0	35	0.94
10329--10367	20	1.9	21	89	5	62	35	2	23	38	1.68
15186--15230	22	2.0	22	95	0	81	51	2	8	37	1.46
15489--15531	22	2.0	22	95	0	77	27	23	18	30	1.98
15479--15626	69	2.1	69	90	7	230	27	16	16	39	1.91
23119--23144	6	4.3	6	100	0	52	15	0	0	84	0.62
23907--24075	73	2.3	73	77	5	171	30	20	23	24	1.98
24151--24246	38	2.5	38	79	1	120	37	21	16	23	1.93
32979--33019	21	2.0	21	95	0	73	39	29	17	14	1.89
34433--34474	16	2.6	16	88	7	59	83	0	16	0	0.65
34433--34485	21	2.5	20	85	11	70	83	0	16	0	0.66
34433--34485	16	3.5	16	76	19	51	83	0	16	0	0.66
37515--37566	21	2.5	21	84	3	70	38	5	13	42	1.68
40309--40383	37	2.0	37	89	0	114	26	24	8	41	1.82
42996--43076	11	7.7	11	72	15	73	40	1	2	55	1.21
43006--43079	17	4.4	16	78	10	76	41	1	2	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42996--43057	28	2.2	28	97	0	115	38	0	3	58	1.15
43036--43079	23	1.9	23	90	0	70	45	2	2	50	1.27
44457--44509	28	1.9	27	84	3	70	33	18	7	39	1.79
44493--44861	29	12.6	28	71	14	169	38	24	0	36	1.61
44493--44662	59	2.9	59	81	6	177	39	21	1	37	1.61
44493--44739	29	8.4	29	76	10	173	38	21	0	38	1.60
44576--44856	58	4.8	59	79	6	261	38	25	0	35	1.61
44576--44861	29	9.8	29	72	9	190	37	26	0	35	1.62
44634--44861	87	2.6	85	79	12	214	37	26	0	35	1.60
49855--50095	29	8.2	28	75	14	136	34	4	27	34	1.77
49865--50093	30	7.7	30	78	6	195	32	4	27	34	1.78
49855--50093	59	4.1	60	82	8	287	34	4	27	33	1.77
51869--51959	44	2.0	45	91	2	148	15	13	30	40	1.85
51980--52053	17	4.4	16	80	10	76	52	1	2	43	1.23
51987--52043	23	2.5	24	80	13	66	52	1	3	42	1.28
51980--52026	6	8.0	6	79	13	53	48	0	2	48	1.13
52359--52887	205	2.6	202	86	3	760	21	22	19	36	1.95
53714--53803	47	1.9	47	82	8	112	12	25	14	47	1.79
64712--64928	29	7.4	29	81	10	214	33	4	29	32	1.78
64664--64928	88	3.0	86	83	11	310	35	4	28	32	1.76
64716--64928	59	3.7	59	86	8	260	34	4	29	31	1.77
66719--66795	35	2.2	35	97	0	145	14	15	28	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66816--66896	6	14.0	6	80	12	89	51	1	1	45	1.16
66817--66907	11	8.0	12	75	13	77	54	1	1	42	1.14
66816--66903	17	5.1	17	87	6	115	52	1	1	45	1.15
66817--66896	23	3.5	23	80	14	85	52	1	1	45	1.16
68423--68466	3	14.3	3	95	4	79	34	0	0	65	0.93
68465--68501	3	12.3	3	100	0	74	0	0	32	67	0.91
68823--68955	27	4.7	28	81	6	142	48	0	1	50	1.10
68823--68948	28	4.4	28	88	7	139	49	0	1	49	1.10
68821--68948	55	2.2	59	83	8	174	49	0	1	49	1.10
70274--70307	17	1.9	18	88	5	52	61	5	0	32	1.20
71231--71446	90	2.4	87	84	9	265	42	20	8	29	1.81
71473--71552	18	4.4	18	70	7	54	57	2	3	36	1.30
71481--71525	18	2.4	19	81	7	56	55	2	2	40	1.24
71789--71949	10	16.3	10	69	12	75	26	4	1	67	1.19
71838--71877	9	4.4	9	84	9	55	25	0	0	75	0.81
71838--71876	17	2.2	18	90	4	62	25	0	0	74	0.82
71847--71876	8	3.6	8	91	8	51	23	0	0	76	0.78
71865--71930	22	3.0	21	78	6	78	24	3	3	69	1.16
71907--71939	9	3.7	9	84	15	50	18	0	3	78	0.87
72925--73302	59	6.4	59	81	4	404	30	3	29	36	1.73
72925--73302	29	12.9	28	70	16	164	30	3	29	36	1.73
74314--74353	12	3.2	12	89	6	62	32	7	10	50	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75085--75161	17	4.6	16	79	9	82	51	5	1	41	1.32
75085--75161	34	2.3	34	83	0	100	51	5	1	41	1.32
87957--88453	29	16.9	30	73	15	364	29	3	29	37	1.72
87957--88453	58	8.4	58	80	7	515	29	3	29	37	1.72
87957--88453	117	4.2	116	84	7	596	29	3	29	37	1.72
89271--89367	31	3.0	33	73	11	119	31	14	2	51	1.54
89240--89423	60	3.0	60	81	8	228	33	14	1	51	1.49
89605--89644	12	3.2	12	86	6	53	32	10	10	47	1.70
90376--90452	17	4.6	16	79	9	82	51	5	1	41	1.32
90376--90452	34	2.3	34	83	0	100	51	5	1	41	1.32
106885--106920	18	1.9	18	88	5	54	52	19	2	25	1.59
111433--111486	21	2.6	21	81	0	63	37	9	18	35	1.83
123187--123213	13	2.1	13	100	0	54	33	7	14	44	1.73
124178--124414	43	5.7	43	75	6	209	27	26	18	27	1.98
124202--124430	122	1.9	122	92	0	386	28	27	16	27	1.97
124497--124529	15	2.2	15	94	0	57	48	27	0	24	1.51
130265--130289	7	3.6	7	100	0	50	40	16	12	32	1.84
130660--130727	8	8.5	8	78	12	68	55	0	0	44	0.99
130671--130745	14	4.9	14	74	17	69	52	0	0	48	1.00
130663--130741	22	3.4	22	83	13	113	54	0	0	45	0.99
130652--130775	48	2.6	48	90	0	194	50	0	2	47	1.14
130660--130738	18	4.8	17	72	17	69	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130756--130785	8	3.8	8	95	0	51	70	0	0	30	0.88
133299--133420	41	3.0	41	79	7	140	20	23	10	45	1.82
133323--133420	41	2.4	41	86	1	144	18	26	10	44	1.81
137650--137678	6	4.8	6	100	0	58	31	0	0	68	0.89
141158--141215	24	2.4	24	86	13	84	58	5	0	36	1.20
142106--142146	21	2.0	21	95	0	73	36	9	17	36	1.82
154367--154636	91	3.0	90	85	3	373	47	9	15	28	1.76
155914--155938	9	2.8	9	100	0	50	8	0	0	92	0.40
156058--156108	26	2.0	26	88	3	77	23	13	37	25	1.92
156267--156318	21	2.6	21	74	17	56	71	0	26	1	0.97

Tables:   1

The End!