genome.fa.s14166.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014166.1 Kokia drynarioides strain JFW-HI SEQ_129199, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125086

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12521--13082	49	11.5	49	73	5	420	38	18	24	18	1.92
12520--13195	98	6.9	98	82	2	694	39	18	24	18	1.92
12667--13129	49	9.4	48	72	11	228	39	17	25	17	1.91
13592--13655	17	3.8	17	78	0	74	39	3	4	53	1.38
14316--14381	12	5.2	13	88	5	66	60	0	0	39	0.97
14336--14389	3	18.0	3	100	0	108	66	0	0	33	0.92
15483--15748	30	8.9	30	71	17	171	30	24	5	39	1.78
15505--15783	60	4.7	59	81	7	275	29	24	5	40	1.78
15522--15805	30	9.6	28	69	14	137	29	23	5	41	1.77
15522--15832	60	5.3	58	80	9	185	29	24	5	40	1.78
15792--15884	29	3.2	29	74	6	107	38	24	4	32	1.75
15792--15902	29	3.8	29	68	12	75	35	24	6	34	1.81
15910--15967	27	2.1	27	87	0	80	32	25	12	29	1.92
20592--20632	19	2.2	19	95	0	73	29	4	24	41	1.75
20885--20931	24	1.9	24	86	4	67	63	6	2	27	1.30
22073--22132	26	2.3	26	85	2	68	40	6	8	45	1.61
22084--22133	26	1.9	26	100	0	100	36	4	8	52	1.50
23202--23302	34	3.0	34	88	1	132	36	7	14	40	1.76
28202--28241	17	2.4	17	82	0	53	12	15	50	22	1.77
30371--30403	16	2.2	15	89	10	50	30	0	6	63	1.18
31412--31461	22	2.4	22	80	6	59	56	0	0	44	0.99
31632--31671	21	1.9	21	89	0	62	47	25	10	17	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33662--33714	2	25.5	2	88	7	79	49	5	0	45	1.26
34566--34794	30	7.8	30	75	7	152	37	21	6	33	1.81
34566--34794	59	3.9	57	76	11	180	37	21	6	33	1.81
37625--37693	34	2.0	34	94	0	120	31	15	21	30	1.95
39030--39070	3	13.7	3	100	0	82	65	0	0	34	0.93
39101--39139	19	2.0	20	85	5	53	64	2	2	30	1.21
39377--39526	40	3.8	38	78	14	162	48	2	7	41	1.45
39374--39498	37	3.3	35	78	14	124	48	2	7	42	1.44
39374--39526	77	2.0	77	87	5	220	47	2	7	42	1.44
39600--39680	25	3.0	26	71	8	74	53	1	7	38	1.37
47983--48129	41	3.6	41	93	0	240	39	10	23	25	1.88
48157--48253	40	2.4	40	89	0	149	43	8	26	21	1.81
49765--49804	20	2.0	20	95	0	71	35	22	20	22	1.96
53997--54048	23	2.2	24	86	10	72	7	3	19	69	1.29
53998--54056	24	2.7	21	73	19	57	8	3	18	69	1.28
54063--54192	56	2.3	56	76	7	138	8	5	18	67	1.36
54071--54178	12	9.3	12	67	13	66	8	5	17	68	1.35
54303--54397	49	2.0	47	83	8	120	27	0	8	64	1.22
56043--56189	41	3.6	41	89	0	222	37	11	24	26	1.90
56219--56311	40	2.3	40	88	0	132	43	6	27	22	1.78
56725--56775	21	2.4	21	83	6	59	29	19	17	33	1.95
59454--59494	21	2.0	21	85	0	55	51	24	7	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76394--76435	19	2.2	19	100	0	84	30	26	11	30	1.92
77863--77900	14	2.6	15	83	4	51	71	2	10	15	1.25
81377--81508	26	5.1	26	83	0	156	34	15	21	28	1.94
101359--101437	23	3.5	22	81	6	77	10	24	21	44	1.83
103161--103215	16	3.4	16	84	0	65	36	5	23	34	1.78
104351--104416	21	3.2	21	64	23	59	50	12	9	28	1.70
104340--104439	40	2.5	40	93	1	173	48	11	9	32	1.70
108984--109034	21	2.4	21	96	0	93	29	19	21	29	1.98
119169--119249	34	2.4	34	87	0	117	40	0	6	53	1.26
119215--119263	24	2.0	25	84	11	66	44	0	4	51	1.20
119169--119249	17	4.8	17	79	0	99	40	0	6	53	1.26
121027--121378	29	12.0	29	78	8	320	36	29	1	32	1.65
121027--121378	59	6.0	59	83	4	388	36	29	1	32	1.65
121622--121648	7	3.9	7	100	0	54	14	0	0	85	0.61

Tables:   1

The End!