genome.fa.s14173.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014173.1 Kokia drynarioides strain JFW-HI SEQ_129206, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93857

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1411--1487	23	3.3	22	79	13	82	11	24	22	41	1.87
7091--7172	31	2.7	31	79	9	96	26	13	10	48	1.75
7036--7219	89	2.1	90	81	5	212	24	11	14	49	1.76
7253--7332	34	2.4	34	95	0	142	37	6	5	51	1.49
11626--11819	96	2.0	96	86	0	271	24	36	14	23	1.93
14818--14905	43	2.0	43	100	0	176	25	20	18	36	1.95
23671--23771	29	3.6	29	76	15	86	56	6	0	36	1.26
25094--25127	16	2.1	17	88	5	52	79	0	14	5	0.91
27400--27428	2	14.5	2	100	0	58	51	0	0	48	1.00
28370--28434	19	3.3	20	75	10	55	66	3	1	29	1.16
45639--45672	17	1.9	18	88	5	52	52	2	5	38	1.41
47347--47682	150	2.2	150	84	2	433	32	19	19	28	1.96
50886--50928	18	2.4	18	88	7	61	53	0	0	46	1.00
54791--54907	62	1.9	59	84	5	153	52	4	1	41	1.31
54881--54934	17	2.9	18	77	20	58	53	1	1	42	1.22
55697--55766	30	2.3	30	100	0	140	31	2	2	62	1.24
59777--59812	17	2.1	18	89	5	56	52	0	8	38	1.32
60660--60723	31	2.1	30	85	5	85	43	12	7	35	1.71
60882--60914	16	2.0	17	88	5	50	54	6	9	30	1.56
62803--62868	32	2.1	32	100	0	132	42	0	12	45	1.41
71650--72575	362	2.6	363	87	2	1299	43	11	12	31	1.79
72985--73037	22	2.4	22	75	6	54	50	1	5	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77058--77120	30	2.1	31	84	3	83	52	6	0	41	1.27
77052--77133	30	2.8	30	76	5	80	52	6	0	41	1.26
79848--79912	30	2.2	30	88	0	94	23	3	13	60	1.48
83009--83085	19	3.8	20	74	17	79	42	1	5	50	1.32
93619--93737	23	5.1	23	82	5	132	10	21	21	46	1.82
93635--93784	69	2.1	69	82	9	171	11	22	20	46	1.82

Tables:   1

The End!