genome.fa.s14174.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014174.1 Kokia drynarioides strain JFW-HI SEQ_129207, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39646

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3698--3883	97	1.9	96	80	9	218	35	15	20	28	1.93
4096--4924	352	2.3	351	88	3	1182	31	4	31	32	1.78
4096--4934	59	14.3	58	85	4	1046	30	4	31	32	1.78
6842--6897	11	5.0	11	80	4	58	53	1	0	44	1.11
6842--6898	6	10.0	6	77	11	66	54	1	0	43	1.10
6842--6898	17	3.4	17	85	0	69	54	1	0	43	1.10
6851--6898	23	2.1	23	100	0	96	58	0	0	41	0.98
6855--6898	11	3.9	11	88	5	70	59	0	0	40	0.98
6935--7757	310	2.6	310	92	1	1342	38	20	12	28	1.89
8815--8851	12	3.1	12	100	0	74	35	0	0	64	0.94
10844--10928	43	2.0	43	86	4	118	31	11	9	47	1.72
11478--11569	45	2.0	45	89	0	139	31	29	16	22	1.96
14352--14398	24	2.0	24	100	0	94	17	17	21	44	1.86
15195--15267	36	2.1	36	84	7	96	45	2	5	46	1.40
15231--15297	30	2.3	30	86	2	91	41	0	5	52	1.26
16443--16496	23	2.3	23	84	9	65	7	18	16	57	1.62
16450--16522	23	3.0	24	78	13	71	8	20	17	53	1.69
20702--20764	16	3.6	16	76	18	54	61	1	1	34	1.15
22414--22537	23	5.4	23	73	15	96	11	22	20	45	1.82
22446--22536	48	1.9	47	84	10	123	10	20	21	46	1.82
26433--26625	30	6.5	31	79	14	221	30	4	30	34	1.78
26434--26625	59	3.3	59	97	0	357	30	4	30	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26624--26717	31	3.1	29	85	8	109	30	7	14	46	1.72
26994--27041	24	2.0	24	100	0	96	50	8	12	29	1.69
31433--31515	42	2.0	42	97	0	157	20	12	25	42	1.86
34584--34641	29	2.0	29	82	0	71	39	0	3	56	1.16

Tables:   1

The End!