Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014185.1 Kokia drynarioides strain JFW-HI SEQ_129218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7781
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Found at i:497 original size:216 final size:212
Alignment explanation
Indices: 4--741 Score: 881
Period size: 216 Copynumber: 3.4 Consensus size: 212
1 GAT
* * *
4 CGAGAATTCGCATCATTTGGTCTTAATAGTTTGTCATTTTGTAAACAACTTTT-GTGCTTTGAAC
1 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGT-CTTTGAAT
* * * * *
68 TAAATACTTTTTTACGTGAGCATTGTTTCCTTCTTGGTTCTTGGACGAACATACAAACTAGTCAA
65 TAAAAACTTTTTTACGTGAGAATTGTTTCC-TCTTGGTTCTTGGATGAACATACGAACT-TTCAA
* * * *
133 A-ATTTTACAAGTTCTTTTATAACTTCGATTCCTGAAAGTATTCAAGACGATCCATTCATTTGAG
128 ACA-TTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACAATCCATTCATTTGAC
197 CAA-TTTTCTGAAATTCCATGC
192 CAATTTTTC-GAAATTCCATGC
* * *
218 TGAGAAATCTCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGACTTTGAATT
1 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * * ** ** *
283 AAAAACTATTTTACCTGAGAATTGTTTCTCTATTAGTTCTTTGATGAAGTTTTGAACTCTTGAAA
66 AAAAACTTTTTTACGTGAGAATTGTTTC-CTCTTGGTTCTTGGATGAACATACGAACT-TTCAAA
* * *
348 CATTTACGAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTAAAGACAATCCATTCTTTTGACCA
129 CATTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACAATCCATTCATTTGACCA
*
413 ATTTTTCGAACATTGCATGCC
194 ATTTTTCGAA-ATTCCATG-C
* * * *
434 CGGGAAATCGCTTCATTTGATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTGAATT
1 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
499 AAATACTTATTTACGTGAGAGTTGTTTCCCTCTTGGTTCTTGGATGAACATACGAACTTGTCAAA
66 AAAAACTTTTTTACGTGAGAATTGTTT-CCTCTTGGTTCTTGGATGAACATACGAACTT-TCAAA
* * * *
564 CTTTTACAAGTTCTTTTATAACTTCGGTTCCTAAGAGTATTCAAGACAATCCATTCCTTTGACAA
129 CATTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACAATCCATTCATTTGACCA
* * *
629 ATTTTTTGAATATTCCGTGAT
194 ATTTTTCGAA-ATTCCATG-C
* * * * * *
650 CGAAAAATCGTATCATTTGGTCAAAATAGTTTGTCATTTTGTAAATAACTTTTGGTTTTTAAATT
1 CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
*
715 AAAAACTTTTTTACTTGAGAATT-TTTC
66 AAAAACTTTTTTACGTGAGAATTGTTTC
742 GACCGTGTGC
Statistics
Matches: 442, Mismatches: 74, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
214 165 0.37
215 19 0.04
216 257 0.58
217 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (212 bp):
CGAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTTTTTACGTGAGAATTGTTTCCTCTTGGTTCTTGGATGAACATACGAACTTTCAAACA
TTTACAAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACAATCCATTCATTTGACCAAT
TTTTCGAAATTCCATGC
Found at i:3121 original size:216 final size:214
Alignment explanation
Indices: 2740--3383 Score: 785
Period size: 216 Copynumber: 3.0 Consensus size: 214
2730 GATCGTATCG
* * * * * * *
2740 ATTTTGTAAACAACTTTTGGTCTTTGAATTAAATACCTATTTACATGAGAGTTATTTCCCTCTTG
1 ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTG
* *
2805 GTTCTTGGATGAACATA-CGAACTTGTCAAACTTTTACAAGTTCTTTTATAACTTCGGTTCCTGA
66 GTTCTTGGATGAA-ATACCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGA
* * * *
2869 GAGTATTCAAGACAATCCATTCCTTTGACAAATTTTTTGAATATTCCATGATCGAAAAATCTCAT
130 GAGTA-TCAAGACGATCCATTCCTTTGACAAATTTTTAGAACATTCCATGATCGAAAAATCACAT
2934 CATTT-GTCCAAAATAGTTTGCC
194 CATTTGGT-CAAAATAG-TTGCC
* *
2956 ATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTCTTTCTCTCTTG
1 ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTG
* * * * *
3021 GTTCTTGGACGAAGTACCAAACTTGTCAAACATTTACTAGTTCTTTTATAGCTTCGGTTCCTGAT
66 GTTCTTGGATGAAATACCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAG
* * * * *
3086 AGTGGTCAAGACGATCCATTCCTTTGACCAATTTTTCGAACATTCCATGATCGAGAAATCACATT
131 AGT-ATCAAGACGATCCATTCCTTTGACAAATTTTTAGAACATTCCATGATCGAAAAATCACATC
* *
3151 ATTTGGTCTAAATAGTTGTC
195 ATTTGGTCAAAATAGTTGCC
* *
3171 ATTTTGTAAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGAGAGAATTGTTTCTCTCTT
1 ATTTTGT-AAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTT
* * * * * * * *
3236 GGCTCTTGGATGAACTTCCGAACTGGTTAAACATTTA-TGAGTTATTTTATATCTTCGGTTCTTG
65 GGTTCTTGGATGAAATACCGAACTTGTCAAACATTTACT-AGTTCTTTTATAACTTCGGTTCCTG
* * *
3300 AGAGTATCCAAGACGATCCATTCCTTTGACTAATTTTTAGAAGATTCCATGATC-AGGAAAT-AG
129 AGAGTAT-CAAGACGATCCATTCCTTTGACAAATTTTTAGAACATTCCATGATCGA-AAAATCA-
**
3363 CATTTTTTGGTCAAAATAGTT
191 CATCATTTGGTCAAAATAGTT
3384 TGTCATTTAC
Statistics
Matches: 375, Mismatches: 45, Indels: 16
0.86 0.10 0.04
Matches are distributed among these distances:
215 17 0.05
216 356 0.95
217 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (214 bp):
ATTTTGTAAAAAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTATTTCTCTCTTG
GTTCTTGGATGAAATACCGAACTTGTCAAACATTTACTAGTTCTTTTATAACTTCGGTTCCTGAG
AGTATCAAGACGATCCATTCCTTTGACAAATTTTTAGAACATTCCATGATCGAAAAATCACATCA
TTTGGTCAAAATAGTTGCC
Found at i:3492 original size:120 final size:120
Alignment explanation
Indices: 3283--3507 Score: 292
Period size: 120 Copynumber: 1.9 Consensus size: 120
3273 TGAGTTATTT
* * * * *
3283 TATATCTTCGGTTCTTGAGAGTATCCAAGACGATCCATTCCTTTGACTAATTTTTAGAAGATTCC
1 TATAACTTCGGTTCCTGAGAGTATCCAAGACGATCCATTCCTTCGACCAATTTTTAGAACATTCC
** *
3348 ATGATCAGGAAATAGCATTTTTTGGTCAAAATAGTTTGTCATTTACTAGTTCTTC
66 ATGATCAGGAAATAGCATCATTTGGGCAAAATAGTTTGTCATTTACTAGTTCTTC
* * *
3403 TATAACTTCGGTTCCTGATAGTAGT-CAAGGCGATCCATTCCTTCGACCAATTTTTTGAACATTC
1 TATAACTTCGGTTCCTGAGAGTA-TCCAAGACGATCCATTCCTTCGACCAATTTTTAGAACATTC
* **
3467 CATGATCAGGAATTCA-CATCATTTGGGCTTAATAGTTTGTC
65 CATGATCAGGAAAT-AGCATCATTTGGGCAAAATAGTTTGTC
3508 GTTTTGTAAA
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
120 87 0.98
121 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.16, T:0.38
Consensus pattern (120 bp):
TATAACTTCGGTTCCTGAGAGTATCCAAGACGATCCATTCCTTCGACCAATTTTTAGAACATTCC
ATGATCAGGAAATAGCATCATTTGGGCAAAATAGTTTGTCATTTACTAGTTCTTC
Found at i:4532 original size:216 final size:216
Alignment explanation
Indices: 3387--7781 Score: 4773
Period size: 216 Copynumber: 20.5 Consensus size: 216
3377 AATAGTTTGT
* * * *
3387 CATTTACTAGTTCTTCTATAACTTCGGTTCCTGATAGTAGTCAAGGCGATCCATTCCTTCGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * * *
3452 ATTTTTTGAACATTCCATGATCAGGAATTCACATCATTTGGGCTTAATAGTTTGTCGTTTTGTAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * * *
3517 ACAACTTTT-GTGCTTTGAACTATATACTTTTTTACATGAGCATTGTTTC-CTTCTTGGTTCTTG
131 ACAACTTTTGGT-CTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTC-TCTTGGTTCTTG
* * * * *
3580 GACAAACATACAAACTAGTCAAA
194 GACGAACTTCCGAACTTGTCAAA
* * * * * * *
3603 -ATTTTACAAGTTCTTTTATAACTTCGATTCCTTAAAGTATTCAAGACGATCCATTCATTTGAGC
1 CA-TTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * * *
3667 AATTTTCTGAA-ATTCCATGCT-GAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
65 AATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * * * * * * *
3730 AGCAACTTTTGGTCTTTGAAATAAAAACTATTTTATGTGAGAATTATTTCTCTATTAGTTCTTTG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * *
3795 ATGAACTTCTGAACTCGTGAAA
195 ACGAACTTCCGAACTTGTCAAA
* * * *
3817 CATTTACGAGTTCTTTTATAACTTCGATTCCTGAGAGTATTAAAGACGATCCATTCTTTCGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
** * * *
3882 ATTTTTTGAACATTCCATGCCCGGGAAATCGCTTCATTTGATCTAAATAGTTTGTCATTTTGT-A
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * * *
3946 ATAACTTTTGGTCTTTAAATTAAAAACTTTTTTATGTGAGAATTCTTTCTCTCTTGGTTATTGGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
*
4011 CAAACTTCCGAACTTGTCAAA
196 CGAACTTCCGAACTTGTCAAA
* * * * * * *
4032 CATTTACTAGTTTTTTTATTACGTCGATTCCTGATAGTAGTGAAGACGATCCATTCCTTCGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* ** * * *
4097 ATTTTTTGAACATTCCATGATCGGAAAATCGCATCATTTGGTCTTCATAGTTTATCATTTTGGAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * *
4162 ACAACTTTTGGCCTTTGAATTAAAAACTTATTTACGTGCGAATTCTTTCTCTCTT-GTTCTTGGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
**
4226 CGAACTTCTAAAGC-TGTCAAA
196 CGAACTTCCGAA-CTTGTCAAA
* * * * * *
4247 CCTTTACTAGTTATTTTATAACTTTGGTTCCTGAGATTATTCAAGATGATCCATTCCTTCGAACA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
4312 ATTTTCTGAACATTCCATGCTCGGGAAATCACATCATTTGGACTAAAAAGTTTGTCATTTTGTAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * *
4377 ACAACTTTTGGTCTTTAAATTAAAAACTTTTTCACGAGAGAATTGCTTCTCTCTTGGTTCTTGGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
** * *
4442 CGAACTTAAGAATTTGTTAAA
196 CGAACTTCCGAACTTGTCAAA
* * * *
4463 CATTTACTAGTTCTTTTATAACTTTGATT-CTCGAGAGTATTCAAGGCGATCCATTCCTTTGACC
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCT-GAGAGTATTCAAGACGATCCATTCCTTCGACC
* * *
4527 AATTTTTTGAAGATT-C-----C-----AT-GCATCATTTGGTC-AAAATAATTTGCCATTTTGT
65 AATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGT
* * * *
4579 AAATAACTTTTTGGTCTTTAAATTAAAAACTTTTTTACGTGAGAATTTTTTCTATCTTGGTTCTT
129 AAACAAC-TTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTT
*
4644 GGACAAACTTCCGAACTTGTCAAA
193 GGACGAACTTCCGAACTTGTCAAA
* * * * *
4668 CATTTACTAGTTCTTTTATTACGTCGATTCCTGATAGTAGTCAAGACGATCCATTCCTTCGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * *
4733 ATTTTTCGAACATTCCATGATCGAGAAATCGTATCATTTGGTCTTAATAG-TTGTCATTTTGGAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* *
4797 ACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTGTGAATTGTTTCTCTCTT-GTTCTTGGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
4861 CAAAAC-ACCGAACTTGTCAAA
196 C-GAACTTCCGAACTTGTCAAA
* * * * * * * * *
4882 CCTTTA-TGAGTTATTTTATAACTTCGATTCTTAAGAGTATTTAAGATGATCCATTCCTTCAACA
1 CATTTACT-AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * ** * * *
4946 AATTTTCTGAACATTCCATGCTCTTGAAATCGCATCATTTGGACAAAAAAGATTGTCATTTTGTA
65 AATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* *
5011 AACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACCTGAGAATTCTTTCTCTCTTGGTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
** *
5076 ACGATGTACCGAACTTGTCAAA
195 ACGAACTTCCGAACTTGTCAAA
* * ** *
5098 CAGTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTGGTCAAGACGATCCATTCCTTTGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
*
5163 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * *
5228 ACAACTTTTGGTCTTTGAATTAAAAAC-TTTTT-CGAGAGAATTATTTCTCTCTTGGTTCTAGGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* * *
5291 CGAACTTCCAAACTGGTTAAA
196 CGAACTTCCGAACTTGTCAAA
* * * * ** *
5312 CATTTACGAGTTCTTTTATAACTTCGGTTCTTGAGAGTATCCAAGACGATCCACTCCTAAGACTA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
*
5377 ATTTTTAGAACATTCCATGATCGGGAAATCGCATCATTTGGTC-AAAATAGTTTGTCATTTTGTA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGT-
* * ** *
5441 AAAAAACTTTTGGTCTTTGAATTAAAAACTTTATTACGAAAGAATTGTTTCTCTCTTGGCTCTTG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * *
5506 GACAAACTTTCGAA-TTGGTTAAA
194 GACGAACTTCCGAACTT-GTCAAA
* * * *
5529 CATTTACGAGTTCTTTTATAACTTTGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACAA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * *
5594 ATTTTTCGCAGATTCCATTATCGGGAAATCACATTATTTGGTC-AAAATAGTTTGTCATTTTGTA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGTA
* * **
5658 AACAACTTTTGGTCTTTGAATTAAATACTTATTTACGTGAGAA-TCATT-TC-C----TTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * * *
5716 ACGGACATACGAACTAGTCAAC
195 ACGAACTTCCGAACTTGTCAAA
* ** * * *
5738 CTTTTAGAAGTTCTATTATAACTTCGGTTCCTGACAGTATTCAAGACAATCCATTCCGTT-GACC
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCC-TTCGACC
* * * * * *
5802 AATTTTTCGAAGATTCCATGATCGAGAAATCACAACATTTGGTC-AAAATTGTTTGTCATTTTGT
65 AATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGT
* * * * * * * *
5866 ATATAACTTTTGGTCTTTGGATT-AAAA-GTTTTTACATTAGAATTCTTTCTCTCTTGGTTCTTA
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* *
5929 GACGAACTTCTGAACGTG-CTAAA
194 GACGAACTTCCGAACTTGTC-AAA
* * * * * *
5952 CATTAACTAGTTATTTTATAACTTCGATTCCTGATAGTAGTCAAGATGATCCATTCCTTCGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * * * * *
6017 ATTTTTCGAAAATTCCATGATCGGGAAATCGCATCGTTTGGTTTAAATAGCTTGTCAATTTGTAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* * * * * *
6082 ACAACTTTT-CTGCTTTGAACTAAATAA-TTTTTTATGTGAGAATTGCTTCCCTCTTGCTTCTTG
131 ACAACTTTTGGT-CTTTGAATTAAA-AACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
* * * *
6145 GACGAACATACAAACTGGTCAAA
194 GACGAACTTCCGAACTTGTCAAA
* * * * *
6168 -ATTTTACAAGTTCTTTTATAACTAT-GGTTCCCT-AAAGTATTCAAGATGTTCCATTGACTT-G
1 CA-TTTACTAGTTCTTTTATAACT-TCGGTT-CCTGAGAGTATTCAAGACGATCCATT-CCTTCG
* * * * * * * **
6229 AGCAATTTTTTGAATATTCCACGCT-GAGAAATCACATCTTTTGGTCTAAATGGTTTGTCATTTT
62 ACCAATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTT
* * * * * *
6293 GTAAACAACTTTAGGAT-TTTGAATTAAAAACTTTTTAACGTAAGGATTGTTTCTCTATTAGTTC
127 GTAAACAACTTTTGG-TCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTC
* *
6357 TAGGACGAACTTCCGAACTTGTTAAA
191 TTGGACGAACTTCCGAACTTGTCAAA
* * * * * *
6383 CATTTACGAATTCTTTTATAACATCGGTTCCTAAGAGTATTCAAGATGATCCATTCCTTTGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
6448 ATTTTTTGAAGATTCCATGACCGGGAAACCGCATCATTTCGT-TAAAATAGTTTGTCATTTTGTA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGTA
* * * * *
6512 AATAACTTTTGGTCTTTGAATTAAAAGCTTTTTTACGTTAGAATTCTTTCACTCTTGGTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
6577 ACGAACTTCCGAACTTGTCAAA
195 ACGAACTTCCGAACTTGTCAAA
* * * * **
6599 CATTTACGAGTTCTTTTATAACTTCAGTTCCTGAGAGTATTTAATACGATCCATTCCTTCGACTT
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
** * ** * * **
6664 ATTTTCCGAACATTTCATTCTCGGGAAATCGCATCACTTGGTCTAAAAAGTTTGGCATGCTGTAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* ** * * * *
6729 AAAACAATTGGTCTTTGATTTAAAAACTTTTTTATGTGAGAATTGGTTCTCTCTTGGTTCTTAGA
131 ACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
* *
6794 CAAACTTTCGAACTTGTCAAA
196 CGAACTTCCGAACTTGTCAAA
* * * *
6815 CATTTA-TGAGTTCTTTTATAACTTTGCTTTCTGAGAGTATTCAATACGATCCATTCCTTCGACC
1 CATTTACT-AGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * * * *
6879 AATTTCTTGAACATTCCATGCTTGGGCAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTATA
65 AATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * * * *
6944 AACAACATTTAGTCTTTGAATTAAAAACTTTATTATGTGAGAATTGTTTCTCTCTCGGTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * *
7009 ATGAAGTGCCGAACTTGTCAAA
195 ACGAACTTCCGAACTTGTCAAA
* * * * * * *
7031 CATTTCCTAGTTCTTTTAAAACTTCGGTTCCAGATAGTAGTCAAGATGATCCATTCCTTTGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* * * *
7096 ATTTTTTGAACATTCCATGCTCGGGAAATCGCATCATTCGGTGTAAAACGTTTGTCATTTTGTAA
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
* *
7161 A-AAGCTATTGGTCATTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
131 ACAA-CTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
** * *
7225 ATAAAGTTCCAAACTTGTCAAA
195 ACGAACTTCCGAACTTGTCAAA
** * * * *
7247 CATTTACTAAATCCTTTATAACTTCGGTTCCTAATAGTAGTCAAGACGATCCACTT-CTTCGACC
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCA-TTCCTTCGACC
* * *
7311 AATTTTTCGAACATTCCATGATCGGGATATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTA
65 AATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTA
* * ** **
7376 AACAACTTTTTGTCTTTGAATTAAAAACTTTTTTACGAGAGAAAAGTTTCTCAATTGGTTCTTGG
130 AACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGG
* * * *
7441 ATGAACTTTCGAACATGTTAAA
195 ACGAACTTCCGAACTTGTCAAA
* * *
7463 TATTTAC-AGGTTCTTTTATAACTCCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTTGACC
1 CATTTACTA-GTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACC
* * * ** *
7527 AATTTTCTGAATATTCCATTATTTGGAAATCGCATCATTTGGTC-AAAATAATTTGTCATTTTGT
65 AATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAA-AGTTTGTCATTTTGT
* * * * * * *
7591 AAATAGCTTTTGGTTTTTGTATTAAAAACTTTTTTACATTAGAATTCTTTCTCTCTTGGTTCTTG
129 AAACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTG
7656 GACGAACTTCCGAACTTGTCAAA
194 GACGAACTTCCGAACTTGTCAAA
* * * * *
7679 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGATAGTAGTCAAGATGATCAATTCCCTCGACCA
1 CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
* *
7744 ATTTTTCGAACATTCCATGATCGGGAAATCACATCATT
66 ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATT
Statistics
Matches: 3495, Mismatches: 606, Indels: 156
0.82 0.14 0.04
Matches are distributed among these distances:
203 4 0.00
204 30 0.01
205 140 0.04
206 3 0.00
207 11 0.00
208 7 0.00
209 152 0.04
210 5 0.00
211 1 0.00
213 9 0.00
214 576 0.16
215 718 0.21
216 1646 0.47
217 191 0.05
218 2 0.00
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.39
Consensus pattern (216 bp):
CATTTACTAGTTCTTTTATAACTTCGGTTCCTGAGAGTATTCAAGACGATCCATTCCTTCGACCA
ATTTTTTGAACATTCCATGATCGGGAAATCGCATCATTTGGTCTAAAAAGTTTGTCATTTTGTAA
ACAACTTTTGGTCTTTGAATTAAAAACTTTTTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGA
CGAACTTCCGAACTTGTCAAA
Done.