Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001419.1 Kokia drynarioides strain JFW-HI SEQ_112916, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2191
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37


Found at i:1369 original size:21 final size:21

Alignment explanation


    Indices: 1328--1371  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1318 AGAGTTTTTA

                            *    
       1328 GTTTCGGTAGAAGTAAGACTT
          1 GTTTCGGTAGAAGTAACACTT

                *                 
       1349 GTTTTGGTAGAAG-AGACACTT
          1 GTTTCGGTAGAAGTA-ACACTT

              
       1370 GT
          1 GT

       1372 ATCTATCGAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  20    1  0.05
  21   19  0.95

ACGTcount: A:0.27, C:0.09, G:0.30, T:0.34


Consensus pattern (21 bp):   
GTTTCGGTAGAAGTAACACTT
Done.