genome.fa.s14191.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014191.1 Kokia drynarioides strain JFW-HI SEQ_129224, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218677

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1310--1393	41	2.0	41	86	4	116	27	20	23	28	1.99
1398--1576	41	4.4	41	82	2	218	16	33	21	29	1.95
7064--7156	11	8.1	11	72	14	64	38	1	3	56	1.22
7066--7176	17	6.4	17	82	7	134	42	0	2	54	1.21
7064--7158	35	2.7	34	88	6	129	40	1	3	55	1.23
7094--7158	6	11.0	6	76	14	64	41	1	1	55	1.18
7066--7176	52	2.1	52	86	3	152	42	0	2	54	1.21
7643--7726	42	2.0	42	100	0	168	47	11	19	21	1.81
8991--9455	30	15.9	30	76	9	345	35	29	3	32	1.73
8991--9413	59	7.2	58	78	8	353	35	30	2	31	1.70
8991--9413	89	4.8	87	79	6	419	35	30	2	31	1.70
9797--9988	96	2.0	96	81	8	221	30	17	13	39	1.87
16399--16437	20	1.9	21	89	5	62	76	2	20	0	0.90
17135--17165	16	1.9	16	93	0	53	51	12	12	22	1.74
17289--17355	10	6.9	10	79	14	70	80	0	19	0	0.71
17289--17355	15	4.6	14	78	19	66	80	0	19	0	0.71
17304--17357	5	9.8	6	82	9	55	81	0	18	0	0.69
17302--17361	27	2.2	28	88	8	88	80	0	20	0	0.72
17289--17362	11	6.9	11	76	10	73	78	0	21	0	0.75
18208--18367	49	3.3	48	80	7	153	37	13	27	21	1.91
18380--18500	47	2.6	47	89	0	188	39	16	20	23	1.92
20167--20247	30	2.7	29	79	5	90	32	19	3	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21394--21453	28	2.1	28	93	0	102	16	11	16	55	1.70
22367--22411	21	2.2	21	84	4	56	31	13	17	37	1.89
31111--31218	53	2.1	52	98	1	207	33	18	13	34	1.90
36033--36058	3	8.7	3	100	0	52	30	0	0	69	0.89
37755--37792	18	2.1	18	90	9	60	23	5	15	55	1.61
38287--38445	51	3.1	49	73	16	144	49	7	1	41	1.42
38305--38524	103	2.1	104	89	1	336	48	8	2	40	1.45
38305--38476	51	3.4	49	77	14	177	48	6	2	42	1.43
38305--38524	52	4.3	51	74	14	168	48	8	2	40	1.45
38524--38561	20	1.9	20	84	10	51	36	15	0	47	1.46
50771--50815	6	7.5	6	89	0	63	46	0	31	22	1.52
58832--58874	21	2.0	21	100	0	86	58	18	4	18	1.56
60948--60998	23	2.2	23	83	13	61	7	3	13	74	1.18
60948--61007	22	2.8	22	75	17	63	8	3	15	73	1.20
60950--61018	20	3.2	22	74	17	63	10	2	14	72	1.22
60983--61024	20	2.1	20	82	8	50	9	2	19	69	1.28
61010--61128	12	10.3	12	76	8	86	9	5	17	68	1.35
61010--61128	24	5.2	23	76	9	100	9	5	17	68	1.35
60994--61128	68	2.0	68	83	2	173	9	4	17	68	1.33
61050--61142	44	2.1	44	84	7	118	9	4	18	67	1.35
64670--64741	29	2.5	29	86	0	90	41	16	13	27	1.87
64704--64822	59	2.0	60	83	4	152	31	20	10	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64638--64798	88	1.8	88	84	5	218	32	17	13	36	1.88
64863--65025	59	2.8	58	81	7	170	38	10	20	31	1.86
70433--70479	21	2.2	21	92	0	76	38	12	12	36	1.82
74157--74189	16	2.1	16	88	5	50	30	0	0	69	0.88
74329--74374	13	3.4	14	80	17	53	76	0	0	23	0.79
75689--75732	19	2.3	19	84	7	54	38	2	6	52	1.41
84200--84254	28	2.0	28	85	7	76	34	20	25	20	1.96
84964--85015	21	2.5	21	84	6	70	26	13	28	30	1.94
89780--89815	15	2.3	17	81	18	51	27	0	11	61	1.30
92868--92913	21	2.2	21	88	7	67	67	2	0	30	1.03
93172--93236	31	2.1	30	82	2	76	23	9	9	58	1.58
93827--93868	23	1.9	22	90	9	68	16	9	7	66	1.42
95831--95872	2	21.0	2	100	0	84	50	50	0	0	1.00
98422--98461	18	2.3	18	91	8	66	55	2	0	42	1.13
101938--102414	49	9.7	49	70	2	258	19	26	16	37	1.93
101945--102415	98	4.8	98	77	2	444	18	27	16	37	1.93
101945--102415	196	2.4	196	82	2	554	18	27	16	37	1.93
111607--111631	13	1.9	13	100	0	50	28	0	8	64	1.22
132961--133048	46	1.9	46	100	0	176	30	20	15	32	1.94
151037--151068	6	5.3	6	100	0	64	0	15	0	84	0.63
164369--164822	226	2.0	226	94	0	800	29	14	24	32	1.95
168183--168319	42	3.2	42	79	11	145	36	9	27	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173793--173842	23	2.2	23	88	0	73	10	24	16	50	1.75
179883--179915	11	3.0	11	91	8	50	21	18	27	33	1.96
180219--180262	23	1.9	23	81	9	54	40	15	9	34	1.79
187225--187276	25	2.1	24	82	10	61	57	19	5	17	1.59
188237--188373	67	2.0	67	97	0	256	39	16	18	25	1.91
189151--189206	25	2.2	25	93	0	94	8	3	33	53	1.49
196632--196667	18	2.0	18	94	0	63	55	13	13	16	1.69
203456--203496	4	10.5	4	94	5	75	75	0	24	0	0.80
203879--203934	27	2.1	27	100	0	112	57	7	3	32	1.43
204669--204702	16	2.1	16	89	10	52	44	2	0	52	1.16
208322--208373	21	2.5	21	78	6	61	25	25	21	28	1.99
217299--217364	34	1.9	34	84	6	89	45	3	6	45	1.43
218299--218335	18	2.1	18	90	10	58	59	0	5	35	1.20

Tables:   1

The End!