genome.fa.s14194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014194.1 Kokia drynarioides strain JFW-HI SEQ_129227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  304403

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10035--10090	18	3.1	18	97	0	103	23	19	28	28	1.98
13053--13426	42	9.2	42	85	6	502	24	17	29	29	1.97
13067--13426	81	4.4	81	91	0	549	23	17	29	29	1.97
33059--33100	13	3.1	13	78	21	50	61	0	38	0	0.96
33059--33103	18	2.9	15	87	12	56	62	0	37	0	0.96
33059--33115	15	3.5	17	79	18	68	66	0	33	0	0.92
40426--40611	51	3.6	51	88	0	237	34	14	23	27	1.94
40426--40611	102	1.8	103	87	3	277	34	14	23	27	1.94
40426--40662	102	2.3	101	82	6	255	35	15	22	27	1.94
47701--47882	51	3.6	51	91	1	285	30	15	24	30	1.95
47701--47933	102	2.3	101	83	5	274	31	16	22	29	1.96
55727--55751	3	8.3	3	100	0	50	36	0	0	64	0.94
55910--55939	14	2.1	14	93	0	51	10	6	26	56	1.57
55910--55966	21	2.7	21	83	0	78	10	7	26	56	1.59
55910--55973	21	3.0	21	77	4	67	12	7	23	56	1.62
58396--58454	29	2.0	29	100	0	118	42	10	13	33	1.78
58788--58827	18	2.2	18	86	4	53	65	2	2	30	1.19
58851--58894	9	5.0	9	83	13	56	68	11	0	20	1.20
60101--60151	14	3.3	15	76	17	59	39	1	0	58	1.09
64038--64078	19	2.2	19	86	0	55	39	7	9	43	1.65
68255--68448	59	3.3	57	80	5	228	37	4	25	32	1.77
68308--68827	59	8.8	57	79	7	447	39	1	25	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68308--68831	29	17.8	30	68	18	207	39	1	25	33	1.67
68285--68473	59	3.2	58	81	5	213	39	4	24	32	1.75
69732--69779	22	2.1	23	85	11	64	39	8	12	39	1.73
70677--70745	6	12.0	6	71	20	58	50	2	0	46	1.16
70687--70745	17	3.5	17	90	0	91	50	3	0	45	1.18
71281--71439	49	3.5	49	69	21	155	23	26	15	33	1.95
71280--71475	86	2.3	86	90	1	304	25	24	15	34	1.95
71081--71610	287	1.8	287	88	1	812	24	22	16	35	1.95
81966--82345	190	2.0	189	94	0	670	39	17	15	27	1.90
83930--84091	29	5.5	29	71	19	95	34	6	25	32	1.83
83962--84112	29	5.2	27	71	20	101	35	7	24	32	1.83
83930--84033	31	3.5	31	70	18	94	35	7	25	30	1.84
83931--84120	59	3.2	59	85	5	251	34	6	25	33	1.82
83990--84636	29	22.4	29	70	15	244	38	2	24	33	1.70
83931--84149	59	3.7	59	81	8	223	36	6	24	32	1.81
84049--84636	59	10.2	57	76	14	412	39	2	24	33	1.68
85545--85592	22	2.1	23	85	11	64	39	8	12	39	1.73
91040--91105	31	2.1	31	94	0	114	40	15	13	30	1.85
91718--91767	20	2.6	19	81	6	55	54	14	4	28	1.58
95425--95496	30	2.4	30	83	4	83	43	19	0	37	1.51
96952--97005	24	2.2	24	80	0	63	20	20	31	27	1.97
98968--99007	21	1.9	21	90	10	64	37	20	17	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100652--100693	20	2.2	19	86	4	57	35	16	0	47	1.47
105235--105302	28	2.4	29	77	5	75	30	20	8	39	1.83
105639--105723	42	2.0	42	90	0	134	28	15	20	36	1.92
120554--120634	32	2.5	32	88	7	121	27	1	20	50	1.56
121158--121190	14	2.4	14	90	5	50	63	12	6	18	1.48
121308--121353	24	2.0	24	86	4	67	26	41	13	19	1.88
127392--127425	17	2.0	17	88	0	50	26	11	11	50	1.73
128477--128519	21	2.0	21	86	0	59	25	25	0	48	1.51
128934--128995	27	2.3	27	100	0	124	20	40	14	24	1.90
129193--129249	19	2.9	19	78	2	60	42	0	7	50	1.29
129719--130123	102	3.9	102	94	0	675	28	8	18	44	1.79
129788--129870	43	2.0	42	87	2	121	27	7	18	46	1.75
129963--130064	46	2.2	46	83	0	132	31	7	18	42	1.79
130009--130136	59	2.2	59	88	0	184	31	7	16	45	1.74
130313--130357	20	2.3	19	84	7	54	55	8	0	35	1.31
131621--131650	15	2.0	15	93	0	51	33	13	10	43	1.77
133046--133139	24	3.9	24	80	8	102	31	21	20	26	1.98
133046--133139	48	2.0	48	82	4	118	31	21	20	26	1.98
133426--134086	331	2.0	332	91	1	1085	31	19	11	37	1.88
150696--150750	23	2.5	22	82	5	58	63	9	3	23	1.40
151491--151527	18	2.0	19	89	5	58	35	16	10	37	1.83
158273--158307	17	2.1	17	88	0	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158815--158842	3	9.3	3	100	0	56	32	0	0	67	0.91
159639--159668	15	2.0	15	93	0	51	20	16	0	63	1.31
163237--163277	11	3.9	11	84	9	50	68	0	0	31	0.90
165681--165811	69	1.9	70	80	1	156	25	22	16	35	1.95
167009--167038	15	1.9	16	93	6	53	36	23	0	40	1.55
186774--186827	17	3.2	17	83	0	72	50	9	16	24	1.74
209524--209557	12	2.8	12	90	0	50	52	0	35	11	1.38
215298--215563	142	1.9	142	86	7	380	40	5	4	49	1.47
216966--217009	18	2.4	18	88	0	61	50	9	31	9	1.65
226716--226759	20	2.3	18	88	7	61	61	0	38	0	0.96
227205--227249	17	2.6	17	85	3	54	20	20	13	46	1.83
227803--227845	23	1.9	22	90	4	68	81	0	18	0	0.69
227801--227844	14	3.3	13	81	12	54	81	0	18	0	0.68
229519--229587	29	2.4	29	100	0	138	37	24	11	26	1.89
230498--230578	40	2.0	40	97	0	153	29	13	2	54	1.52
233728--233786	21	2.7	22	84	7	75	16	1	13	67	1.30
235458--235498	21	1.9	22	90	5	66	21	29	19	29	1.98
240512--240555	22	2.0	22	100	0	88	22	22	22	31	1.98
270454--270497	23	2.0	22	90	4	70	47	15	0	36	1.46
271476--271515	21	1.9	21	90	10	64	7	7	5	80	1.03
280315--280348	15	2.3	15	90	10	52	82	2	0	14	0.79
286220--286558	173	2.0	166	89	5	518	59	7	15	17	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286628--286667	21	1.9	21	85	10	55	52	0	40	7	1.30

Tables:   1

The End!