genome.fa.s14195.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014195.1 Kokia drynarioides strain JFW-HI SEQ_129228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94677

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3464--3510	2	23.5	2	95	0	85	46	0	53	0	1.00
20766--20828	27	2.3	27	78	13	76	61	3	3	31	1.27
20804--20971	83	2.0	83	92	0	282	52	8	10	28	1.65
22156--22243	7	12.7	7	79	2	61	18	0	27	54	1.44
22157--22214	21	2.8	22	82	10	68	17	0	25	56	1.40
22163--22244	21	4.0	21	83	1	76	18	0	25	56	1.42
22205--22316	14	7.7	14	66	15	57	21	2	25	50	1.61
22232--22309	20	3.9	20	68	18	72	24	3	21	50	1.66
22252--22323	27	2.7	27	78	8	83	25	2	22	50	1.63
22233--22316	40	2.1	40	86	6	116	22	3	23	50	1.65
22247--22323	14	5.8	13	73	20	61	24	3	20	50	1.65
22300--22414	20	5.8	20	80	6	99	24	4	19	52	1.64
22251--22323	13	5.5	12	77	18	65	26	2	21	49	1.63
22332--22410	40	2.0	40	87	5	115	26	6	18	48	1.72
24432--24463	3	10.7	3	100	0	64	65	0	34	0	0.93
28892--28916	9	2.8	9	100	0	50	68	0	32	0	0.90
29465--29618	77	2.0	75	86	5	211	46	3	1	48	1.28
34497--34551	25	2.2	24	78	9	56	74	14	1	9	1.14
35529--35577	22	2.2	22	96	0	89	44	4	14	36	1.64
38226--38250	9	2.8	9	100	0	50	8	0	20	72	1.10
43855--43886	13	2.5	13	94	0	55	12	15	34	37	1.85
46748--46778	12	2.6	12	94	0	53	6	3	38	51	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59247--59273	5	5.4	5	100	0	54	37	22	0	40	1.54
64036--64073	6	6.3	6	96	0	67	21	0	47	31	1.51
67429--67503	11	6.5	11	71	14	53	44	0	2	53	1.14
67424--67495	6	12.3	6	73	16	62	45	1	2	50	1.25
67424--67488	17	3.8	17	87	0	94	44	1	3	50	1.26
67459--67503	24	1.9	23	90	4	72	48	0	0	51	1.00
67934--67964	13	2.4	13	100	0	62	35	19	0	45	1.51
68263--68307	16	2.9	15	87	9	63	55	0	8	35	1.31
68593--68641	24	2.0	25	84	4	64	44	4	18	32	1.68
69320--69726	29	13.9	29	76	13	293	36	29	3	30	1.74
79327--79559	57	4.1	57	75	7	197	30	18	9	41	1.82
81095--81266	83	2.1	83	100	0	344	59	5	13	20	1.55
81409--81568	59	2.7	59	81	5	171	42	8	20	28	1.81
81546--81587	19	2.2	19	100	0	84	35	0	28	35	1.58
81491--81646	78	2.0	78	85	7	210	35	2	26	34	1.71
81564--81652	30	3.1	28	79	9	115	34	1	25	38	1.64
81565--81739	59	3.0	59	85	1	226	34	4	24	37	1.74
81572--81725	29	5.3	29	75	10	134	36	3	22	37	1.73
81571--81737	58	2.9	58	86	0	208	34	4	23	37	1.74
82568--82612	20	2.3	20	84	3	65	37	6	4	51	1.49
83299--83424	34	3.6	34	72	15	94	51	4	0	42	1.28
83323--83428	17	5.9	17	68	10	68	54	4	0	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83322--83410	11	7.5	11	75	18	54	53	4	1	40	1.28
83359--83387	15	1.9	15	100	0	58	55	0	3	41	1.17
83354--83430	28	2.8	27	81	9	84	55	3	1	38	1.26
83856--84373	201	2.6	201	88	1	748	23	23	18	34	1.96
84243--84453	115	1.8	115	89	0	332	25	22	17	34	1.96
84034--84703	324	2.1	316	86	3	923	24	23	17	34	1.96

Tables:   1

The End!