Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01014197.1 Kokia drynarioides strain JFW-HI SEQ_129230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 282627
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Warning! 20 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:96 original size:24 final size:24
Alignment explanation
Indices: 64--119 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
54 TGTATGGGTA
64 TCTTCTTGTTTTTCATTTTCTGTT
1 TCTTCTTGTTTTTCATTTTCTGTT
*
88 TCTTCTTGTTTTTCATTTTCTTTT
1 TCTTCTTGTTTTTCATTTTCTGTT
*
112 TCCTCTTG
1 TCTTCTTG
120 AGAACTCTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.04, C:0.20, G:0.07, T:0.70
Consensus pattern (24 bp):
TCTTCTTGTTTTTCATTTTCTGTT
Found at i:7303 original size:60 final size:58
Alignment explanation
Indices: 7177--7310 Score: 164
Period size: 60 Copynumber: 2.3 Consensus size: 58
7167 TTTTTAATTC
* * *
7177 ATAT-TTTAATAATAATTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAA
1 ATATATTTAATAATAATAATATTAAGAATATGATTAAATTATATATTATTTTATTAAA
* * *
7234 TTATATTTAATAATAATAATGTTAA-AATATGATTAAATTATTTATTATTTTTTTATTAAA
1 ATATATTTAATAATAATAATATTAAGAATATGATTAAATTA--TA-TATTATTTTATTAAA
*
7294 ATATATTTAACAATAAT
1 ATATATTTAATAATAAT
7311 CTTATTAAAA
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
57 16 0.25
58 18 0.28
59 2 0.03
60 29 0.45
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.51
Consensus pattern (58 bp):
ATATATTTAATAATAATAATATTAAGAATATGATTAAATTATATATTATTTTATTAAA
Found at i:7335 original size:25 final size:26
Alignment explanation
Indices: 7286--7335 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7276 TATTATTTTT
*
7286 TTATTAAAATATATTTAACAATAATC
1 TTATTAAAATATATATAACAATAATC
*
7312 TTATTAAAATTTA-ATAACAATAAT
1 TTATTAAAATATATATAACAATAAT
7336 AATATATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (26 bp):
TTATTAAAATATATATAACAATAATC
Found at i:8258 original size:24 final size:24
Alignment explanation
Indices: 8220--8265 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8210 CAAAAATTTA
*
8220 ACATTACATCGAAATATCTAATCT
1 ACATTACATCAAAATATCTAATCT
* *
8244 ACATTATATCAAAATTTCTAAT
1 ACATTACATCAAAATATCTAAT
8266 TTCTACCAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.37
Consensus pattern (24 bp):
ACATTACATCAAAATATCTAATCT
Found at i:11528 original size:31 final size:29
Alignment explanation
Indices: 11508--11567 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
11498 TATTGTTTAA
11508 TGTATAATTGTATACATGAATTTTGATTT
1 TGTATAATTGTATACATGAATTTTGATTT
* * *
11537 TGTGTAATTTTATACATAAAATTTTGATTT
1 TGTATAATTGTATACAT-GAATTTTGATTT
11567 T
1 T
11568 ATCAAATTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 15 0.56
30 12 0.44
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (29 bp):
TGTATAATTGTATACATGAATTTTGATTT
Found at i:11822 original size:29 final size:28
Alignment explanation
Indices: 11758--11822 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
11748 GTTTTATGAG
11758 TATAATTGCACCAAATTAAAATTCACATA
1 TATAATTGCACCAAATTAAAATT-ACATA
* * *
11787 AACAATTGCACATTAAATTAAAATT-CATA
1 TATAATTGCAC--CAAATTAAAATTACATA
11816 TATAATT
1 TATAATT
11823 TTGAGATTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
29 18 0.62
31 11 0.38
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.34
Consensus pattern (28 bp):
TATAATTGCACCAAATTAAAATTACATA
Found at i:12069 original size:29 final size:28
Alignment explanation
Indices: 12005--12069 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 28
11995 GTTTTATGAG
12005 TATAATTGCACCAAATTAAAATTCACATA
1 TATAATTGCACCAAATTAAAATT-ACATA
* * *
12034 AACAATTGCACATTAAATTAAAATT-CATA
1 TATAATTGCAC--CAAATTAAAATTACATA
12063 TATAATT
1 TATAATT
12070 TTGAGATTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
29 18 0.62
31 11 0.38
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.34
Consensus pattern (28 bp):
TATAATTGCACCAAATTAAAATTACATA
Found at i:12144 original size:247 final size:247
Alignment explanation
Indices: 11708--12207 Score: 1000
Period size: 247 Copynumber: 2.0 Consensus size: 247
11698 TGATTAAATC
11708 AAAATTAAAATTTCAACTACACATTTGAATCACAATTAGAGTTTTATGAGTATAATTGCACCAAA
1 AAAATTAAAATTTCAACTACACATTTGAATCACAATTAGAGTTTTATGAGTATAATTGCACCAAA
11773 TTAAAATTCACATAAACAATTGCACATTAAATTAAAATTCATATATAATTTTGAGATTTATCTCT
66 TTAAAATTCACATAAACAATTGCACATTAAATTAAAATTCATATATAATTTTGAGATTTATCTCT
11838 AAATTTATCCGTTACGTTTTCAATTAAAATTGAAATTTAAAAATTCAAATATGTGATACGAAACA
131 AAATTTATCCGTTACGTTTTCAATTAAAATTGAAATTTAAAAATTCAAATATGTGATACGAAACA
11903 GATACCATAATTCGACCTACCAAATTTATATGCTACAATTTGAAATGGGATT
196 GATACCATAATTCGACCTACCAAATTTATATGCTACAATTTGAAATGGGATT
11955 AAAATTAAAATTTCAACTACACATTTGAATCACAATTAGAGTTTTATGAGTATAATTGCACCAAA
1 AAAATTAAAATTTCAACTACACATTTGAATCACAATTAGAGTTTTATGAGTATAATTGCACCAAA
12020 TTAAAATTCACATAAACAATTGCACATTAAATTAAAATTCATATATAATTTTGAGATTTATCTCT
66 TTAAAATTCACATAAACAATTGCACATTAAATTAAAATTCATATATAATTTTGAGATTTATCTCT
12085 AAATTTATCCGTTACGTTTTCAATTAAAATTGAAATTTAAAAATTCAAATATGTGATACGAAACA
131 AAATTTATCCGTTACGTTTTCAATTAAAATTGAAATTTAAAAATTCAAATATGTGATACGAAACA
12150 GATACCATAATTCGACCTACCAAATTTATATGCTACAATTTGAAATGGGATT
196 GATACCATAATTCGACCTACCAAATTTATATGCTACAATTTGAAATGGGATT
12202 AAAATT
1 AAAATT
12208 TTAAGTTTAA
Statistics
Matches: 253, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
247 253 1.00
ACGTcount: A:0.43, C:0.13, G:0.09, T:0.35
Consensus pattern (247 bp):
AAAATTAAAATTTCAACTACACATTTGAATCACAATTAGAGTTTTATGAGTATAATTGCACCAAA
TTAAAATTCACATAAACAATTGCACATTAAATTAAAATTCATATATAATTTTGAGATTTATCTCT
AAATTTATCCGTTACGTTTTCAATTAAAATTGAAATTTAAAAATTCAAATATGTGATACGAAACA
GATACCATAATTCGACCTACCAAATTTATATGCTACAATTTGAAATGGGATT
Found at i:13151 original size:22 final size:23
Alignment explanation
Indices: 13108--13151 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
13098 TATAAAGTAT
13108 AATAAGGGAGGAATACAAGGTGG
1 AATAAGGGAGGAATACAAGGTGG
13131 AATAAGGG-GGAGAT-CAAGGTG
1 AATAAGGGAGGA-ATACAAGGTG
13152 ATGTAGAGGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.41, C:0.05, G:0.41, T:0.14
Consensus pattern (23 bp):
AATAAGGGAGGAATACAAGGTGG
Found at i:14629 original size:28 final size:28
Alignment explanation
Indices: 14588--14797 Score: 233
Period size: 28 Copynumber: 7.5 Consensus size: 28
14578 AATTGACGGT
* * *
14588 CTTTATGGTTATCTTTGCTTAAGGATGC
1 CTTTGTGGCTATCTTTGCTTGAGGATGC
* *
14616 CTTTGTAGCTATCTTTGTTTGAGGATGC
1 CTTTGTGGCTATCTTTGCTTGAGGATGC
*
14644 CTTTGTGTCTATCTTTGCTTGAGGATGC
1 CTTTGTGGCTATCTTTGCTTGAGGATGC
*
14672 CTTTGTGTCTATCTTTGCTTGAGGATGC
1 CTTTGTGGCTATCTTTGCTTGAGGATGC
* * * *
14700 CTTTATGGCTATATTTGCTTAAGGACGC
1 CTTTGTGGCTATCTTTGCTTGAGGATGC
* * **
14728 CTTTGTGGCTATCTTTGTTTGATGACAC
1 CTTTGTGGCTATCTTTGCTTGAGGATGC
* *
14756 CTTTGTGGCTATCTTT-TTTCAAGGATGC
1 CTTTGTGGCTATCTTTGCTT-GAGGATGC
* *
14784 CTCTATGGCTATCT
1 CTTTGTGGCTATCT
14798 ATGTCAAAAG
Statistics
Matches: 156, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
27 3 0.02
28 153 0.98
ACGTcount: A:0.15, C:0.18, G:0.22, T:0.45
Consensus pattern (28 bp):
CTTTGTGGCTATCTTTGCTTGAGGATGC
Found at i:14793 original size:56 final size:56
Alignment explanation
Indices: 14588--14797 Score: 260
Period size: 56 Copynumber: 3.8 Consensus size: 56
14578 AATTGACGGT
* * *
14588 CTTTATGGTTATCTTTGCTTAAGGATGCCTTTGTAGCTATCTTTGTTTGAGGATGC
1 CTTTGTGGCTATCTTTGCTTAAGGATGCCTTTGTGGCTATCTTTGTTTGAGGATGC
* * * *
14644 CTTTGTGTCTATCTTTGCTTGAGGATGCCTTTGTGTCTATCTTTGCTTGAGGATGC
1 CTTTGTGGCTATCTTTGCTTAAGGATGCCTTTGTGGCTATCTTTGTTTGAGGATGC
* * * * **
14700 CTTTATGGCTATATTTGCTTAAGGACGCCTTTGTGGCTATCTTTGTTTGATGACAC
1 CTTTGTGGCTATCTTTGCTTAAGGATGCCTTTGTGGCTATCTTTGTTTGAGGATGC
* * *
14756 CTTTGTGGCTATCTTT-TTTCAAGGATGCCTCTATGGCTATCT
1 CTTTGTGGCTATCTTTGCTT-AAGGATGCCTTTGTGGCTATCT
14798 ATGTCAAAAG
Statistics
Matches: 130, Mismatches: 23, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
55 2 0.02
56 128 0.98
ACGTcount: A:0.15, C:0.18, G:0.22, T:0.45
Consensus pattern (56 bp):
CTTTGTGGCTATCTTTGCTTAAGGATGCCTTTGTGGCTATCTTTGTTTGAGGATGC
Found at i:17598 original size:195 final size:191
Alignment explanation
Indices: 17289--17652 Score: 469
Period size: 195 Copynumber: 1.9 Consensus size: 191
17279 TACTATAAAC
* * * *
17289 TGTTCCCTAACGATGCTGCTCACACGAGCTATCGAGAGTATGCATAAAGTATAGTCTCAGCCATC
1 TGTTCCCTAACGAAGCTGCTCACACGAGCTATCGAGAATATGCATAAAGCATAATCTCAGCCATC
* * *
17354 GTAGGGCCTATAATCCTTTTAGGATCCATATCTCTTTCCTGATTCACGATGCTGCTCACACGAGC
66 GTAGGGCCTATAATCCTTCTAGGATCCATATCTCTTTCCCGACTCACGATGCTGCTCACACGAGC
**
17419 TGTCGAGGACTCACAACATATGTTGTACCTCAACCATCGTTACGATATCTGCTCATATAAT
131 TGTCGAGGACTCACAACATATGCGGTACCTCAACCATCGTTACGATATCTGCTCATATAAT
* * * * * *
17480 TGTTCCCTAACGAAGTTGCTCACACGAGTTGTTGAGAATATGCACTTATGCATAAATCTCAGCCA
1 TGTTCCCTAACGAAGCTGCTCACACGAGCTATCGAGAATATGCA-TAAAGCAT-AATCTCAGCCA
* * * * *
17545 TCGTAGGGCTTGTAATCCATTGCT-GGATCCTTTTCTAGTTTCCCGACTCACGATGCTGCTCACA
64 TCGTAGGGCCTATAATCC-TT-CTAGGATCCATATCT-CTTTCCCGACTCACGATGCTGCTCACA
** *
17609 CGAGCTGTCGAGGACTCGTAACATATGCGGTACCTCAGCCATCG
126 CGAGCTGTCGAGGACTCACAACATATGCGGTACCTCAACCATCG
17653 CGTCGGTTTC
Statistics
Matches: 145, Mismatches: 23, Indels: 6
0.83 0.13 0.03
Matches are distributed among these distances:
191 38 0.26
192 5 0.03
193 26 0.18
194 12 0.08
195 64 0.44
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (191 bp):
TGTTCCCTAACGAAGCTGCTCACACGAGCTATCGAGAATATGCATAAAGCATAATCTCAGCCATC
GTAGGGCCTATAATCCTTCTAGGATCCATATCTCTTTCCCGACTCACGATGCTGCTCACACGAGC
TGTCGAGGACTCACAACATATGCGGTACCTCAACCATCGTTACGATATCTGCTCATATAAT
Found at i:22667 original size:195 final size:195
Alignment explanation
Indices: 22283--22730 Score: 564
Period size: 195 Copynumber: 2.3 Consensus size: 195
22273 TACCAGTACT
* * * * * *
22283 CGATGCTGCTCACACGAGCTATTGAAGACTTGTAACGTATGCGGTACCCCAGCCATCGGTACGGT
1 CGATGCTGCTCACACGAGCTATCGAGGACTCGTAACATATGCGGTACCTCAGCCATCGGTACGAT
* * * *
22348 GCCTGTCTGTACTATAAACTGTTCCCTAACGATGCTGCTCACACGAGCTATCGAGAGTATGCATA
66 ACCTGTCTGCACTATAAACTGTTCCCTAACGATGCTGCTCACACGAGCTATCGAAAATATGCATA
* * * *
22413 AAGTATAGTCTCAGCCATCGTAGGGCCTATAATCCTTTTAGGATCCATATCTCTTTCCCGAGTCA
131 AAGCATAATCTCAGCCATCGTAGGGCCTATAATCCTTCTAGGATCCATATCTCTTTCCCGACTCA
* * * *
22478 CGATGCTGCTCACACGAGCTATCGAGGACTCGCAACATATGCGGTACCTCAACCATCGTTATGAT
1 CGATGCTGCTCACACGAGCTATCGAGGACTCGTAACATATGCGGTACCTCAGCCATCGGTACGAT
* *
22543 ATCTG-C-GCA-TAT-AACTGTTCCCTAACGATGCTGCTCACACGAGCTGTCGAAAATATGCACT
66 ACCTGTCTGCACTATAAACTGTTCCCTAACGATGCTGCTCACACGAGCTATCGAAAATATGCA-T
* * * * * *
22604 TATGCATAAATCTCAGCCATTGTAGGGCCTGTAATCCATTCCT-GGATCCTTTTCTCTTTTCCCG
130 AAAGCAT-AATCTCAGCCATCGTAGGGCCTATAATCC-TT-CTAGGATCCATATCTC-TTTCCCG
22668 ACTCA
191 ACTCA
* *
22673 CGATGCTGCTCACACGAGCTATCGAGGACTCGTAACATGTGCAGTACCTCAGCCATCG
1 CGATGCTGCTCACACGAGCTATCGAGGACTCGTAACATATGCGGTACCTCAGCCATCG
22731 CGTTGGTTTC
Statistics
Matches: 218, Mismatches: 30, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
191 44 0.20
192 8 0.04
193 28 0.13
194 14 0.06
195 124 0.57
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (195 bp):
CGATGCTGCTCACACGAGCTATCGAGGACTCGTAACATATGCGGTACCTCAGCCATCGGTACGAT
ACCTGTCTGCACTATAAACTGTTCCCTAACGATGCTGCTCACACGAGCTATCGAAAATATGCATA
AAGCATAATCTCAGCCATCGTAGGGCCTATAATCCTTCTAGGATCCATATCTCTTTCCCGACTCA
Found at i:25268 original size:20 final size:20
Alignment explanation
Indices: 25239--25283 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
25229 AATTCGACGA
*
25239 AATTACCTATCCAA-AATTT
1 AATTACCTATACAATAATTT
25258 AATTCACCTATACAATAATTT
1 AATT-ACCTATACAATAATTT
*
25279 TATTA
1 AATTA
25284 ATATTTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 10 0.45
21 8 0.36
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.40
Consensus pattern (20 bp):
AATTACCTATACAATAATTT
Found at i:27083 original size:45 final size:45
Alignment explanation
Indices: 27034--27174 Score: 151
Period size: 45 Copynumber: 3.1 Consensus size: 45
27024 AAAATTATTG
27034 TTTTGGTGTTGTTTTTTGCTGTTTTGTTTGCTATTTTTTTTACTA
1 TTTTGGTGTTGTTTTTTGCTGTTTTGTTTGCTATTTTTTTTACTA
* * **
27079 TTTTGGTATTGTGTTTTTACTGTTTTGGATGCTA-TTTTTTTACTA
1 TTTTGGTGTTGT-TTTTTGCTGTTTTGTTTGCTATTTTTTTTACTA
* * * * *
27124 TTTTGGTGCTGTTTTTATTGTTATTTT-TGTTGCTATTTTTTTCATTA
1 TTTTGGTGTTG-TTTT-TTGCTGTTTTGT-TTGCTATTTTTTTTACTA
27171 TTTT
1 TTTT
27175 TGCTGCTGTT
Statistics
Matches: 78, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
45 34 0.44
46 31 0.40
47 13 0.17
ACGTcount: A:0.10, C:0.06, G:0.16, T:0.67
Consensus pattern (45 bp):
TTTTGGTGTTGTTTTTTGCTGTTTTGTTTGCTATTTTTTTTACTA
Found at i:27098 original size:22 final size:23
Alignment explanation
Indices: 27070--27130 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
27060 TTTGCTATTT
*
27070 TTTTTACTATTTTGGTAT-TGTG
1 TTTTTACTATTTTGGTATCTATG
* *
27092 TTTTTACTGTTTTGG-ATGCTATT
1 TTTTTACTATTTTGGTAT-CTATG
27115 TTTTTACTATTTTGGT
1 TTTTTACTATTTTGGT
27131 GCTGTTTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 14 0.44
23 16 0.50
ACGTcount: A:0.13, C:0.07, G:0.16, T:0.64
Consensus pattern (23 bp):
TTTTTACTATTTTGGTATCTATG
Found at i:27139 original size:23 final size:23
Alignment explanation
Indices: 27062--27186 Score: 83
Period size: 24 Copynumber: 5.4 Consensus size: 23
27052 CTGTTTTGTT
*
27062 TGCTATTTTTTTTACTATTTTGG
1 TGCTGTTTTTTTTACTATTTTGG
** * *
27085 TATTG-TGTTTTTACTGTTTTGG
1 TGCTGTTTTTTTTACTATTTTGG
*
27107 ATGCT-ATTTTTTTACTATTTTGG
1 -TGCTGTTTTTTTTACTATTTTGG
* ** *
27130 TGCTGTTTTTATTGTTATTTTTGT
1 TGCTGTTTTTTTTACTA-TTTTGG
* * * *
27154 TGCTATTTTTTTCATTATTTTTGC
1 TGCTGTTTTTTTTACTA-TTTTGG
27178 TGCTGTTTT
1 TGCTGTTTT
27187 GGTTATTATT
Statistics
Matches: 78, Mismatches: 20, Indels: 7
0.74 0.19 0.07
Matches are distributed among these distances:
22 19 0.24
23 27 0.35
24 32 0.41
ACGTcount: A:0.11, C:0.08, G:0.15, T:0.66
Consensus pattern (23 bp):
TGCTGTTTTTTTTACTATTTTGG
Found at i:27175 original size:24 final size:23
Alignment explanation
Indices: 27108--27198 Score: 85
Period size: 24 Copynumber: 3.9 Consensus size: 23
27098 CTGTTTTGGA
* *
27108 TGCTATTTTTTTACTA-TTTTGG
1 TGCTATTTTTTTATTATTTTTGC
* * *
27130 TGCTGTTTTTATTGTTATTTTTGT
1 TGCTATTTTT-TTATTATTTTTGC
27154 TGCTATTTTTTTCATTATTTTTGC
1 TGCTATTTTTTT-ATTATTTTTGC
* *
27178 TGCTGTTTTGGTTATTATTTT
1 TGCTATTTT-TTTATTATTTT
27199 GATTATTTGG
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
22 9 0.16
23 6 0.11
24 39 0.70
25 2 0.04
ACGTcount: A:0.11, C:0.08, G:0.14, T:0.67
Consensus pattern (23 bp):
TGCTATTTTTTTATTATTTTTGC
Found at i:27196 original size:48 final size:46
Alignment explanation
Indices: 27055--27198 Score: 121
Period size: 46 Copynumber: 3.1 Consensus size: 46
27045 TTTTTTGCTG
* ** * *
27055 TTTTGTTTGCTATTTTTTTTACTATTTTGGTATTGTGTTT--TTACTGT
1 TTTTG-TTGCTA-TTTTTTTACTATTTTGCTGCTGT-TTTGATTATTAT
* * * * *
27102 TTTGGATGCTATTTTTTTACTATTTTGGTGCTGTTTTTATTGTTAT
1 TTTTGTTGCTATTTTTTTACTATTTTGCTGCTGTTTTGATTATTAT
* *
27148 TTTTGTTGCTATTTTTTTCATTATTTTTGCTGCTGTTTTGGTTATTAT
1 TTTTGTTGCTATTTTTTT-ACTA-TTTTGCTGCTGTTTTGATTATTAT
27196 TTT
1 TTT
27199 GATTATTTGG
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
44 3 0.04
45 21 0.27
46 25 0.32
47 7 0.09
48 23 0.29
ACGTcount: A:0.11, C:0.07, G:0.15, T:0.67
Consensus pattern (46 bp):
TTTTGTTGCTATTTTTTTACTATTTTGCTGCTGTTTTGATTATTAT
Found at i:27359 original size:12 final size:11
Alignment explanation
Indices: 27330--27365 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
27320 TTAATATAAA
27330 GTATTTTTAAT
1 GTATTTTTAAT
27341 GTATTTTTAAT
1 GTATTTTTAAT
*
27352 TTATTTTTTAAT
1 GTA-TTTTTAAT
27364 GT
1 GT
27366 TTATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 13 0.59
12 9 0.41
ACGTcount: A:0.25, C:0.00, G:0.08, T:0.67
Consensus pattern (11 bp):
GTATTTTTAAT
Found at i:27372 original size:12 final size:11
Alignment explanation
Indices: 27333--27381 Score: 53
Period size: 12 Copynumber: 4.3 Consensus size: 11
27323 ATATAAAGTA
*
27333 TTTTTAATGTA
1 TTTTTAATGTT
*
27344 TTTTTAATTTAT
1 TTTTTAATGT-T
27356 TTTTTAATGTT
1 TTTTTAATGTT
*
27367 TATTTTAAAGTT
1 T-TTTTAATGTT
27379 TTT
1 TTT
27382 AAGCGTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
11 13 0.41
12 19 0.59
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.69
Consensus pattern (11 bp):
TTTTTAATGTT
Found at i:27381 original size:23 final size:22
Alignment explanation
Indices: 27326--27381 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
27316 TATCTTAATA
*
27326 TAAAGTATTTTTAATGTATTTT
1 TAAAGTTTTTTTAATGTATTTT
** *
27348 TAATTTATTTTTTAATGTTTATTT
1 TAAAGT-TTTTTTAATGTAT-TTT
27372 TAAAGTTTTT
1 TAAAGTTTTT
27382 AAGCGTATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
22 4 0.15
23 15 0.58
24 7 0.27
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (22 bp):
TAAAGTTTTTTTAATGTATTTT
Found at i:29803 original size:40 final size:39
Alignment explanation
Indices: 29518--29942 Score: 285
Period size: 38 Copynumber: 10.9 Consensus size: 39
29508 CGGTGTTTAC
* ** *
29518 CGGGCTTAGTGCCTAGC-GGACTTCATGCCGGTGT-TTAT
1 CGGGCTTAGTGCCTAGCAGG-CTTCGTGTTGATGTATTAT
* * * * *
29556 CGGACTTAATGCCTAGCAGTCTTCGTGTCGGTGT-TTAT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTATTAT
** * *
29594 CGGGCTTAGTGCCTAGCAAACTTCGTGCTGGTGT-TTAT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTATTAT
** * *
29632 CAAGCTTAGTGCTTAGCAGGCTTCGTG-TCA-GTATTTAT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTA-TTAT
* * *
29670 TGGGCTTAGTGCCTAGTAGGCTTCGTGTCGATGT-TTAT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTATTAT
* *
29708 CGGGCTTAGTGCCTAGCAGGCTTAGTGCTGATGTATTTAT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTA-TTAT
** * * * * *
29748 TAGGTTTTGTACCTAGCAGGCTT-GTGTTGGTGTATACTAC
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTAT--TAT
* * *
29788 CGGGCTTAGTGCCTAGCAGGTTTCGTATTGTTGT-TTAT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTATTAT
* * ** * *
29826 CGGGCTTAGTGCCTAGTAGGCTTAGTGCCGGTATATTTAT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTA-TTAT
* * * * * *
29866 CGAGCTTTGTGCCTAGTAGGCTT-GTGTCGGTGTATACTGT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTAT--TAT
* * *
29906 CGGGCTTTGAGCCTAGCAGGTTTCGTGTTGATGTATT
1 CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTATT
29943 GTATCAAGTA
Statistics
Matches: 306, Mismatches: 66, Indels: 29
0.76 0.16 0.07
Matches are distributed among these distances:
36 2 0.01
37 1 0.00
38 174 0.57
39 21 0.07
40 90 0.29
41 18 0.06
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.37
Consensus pattern (39 bp):
CGGGCTTAGTGCCTAGCAGGCTTCGTGTTGATGTATTAT
Found at i:29829 original size:118 final size:118
Alignment explanation
Indices: 29560--29931 Score: 346
Period size: 118 Copynumber: 3.2 Consensus size: 118
29550 GTTTATCGGA
* * * ** * *
29560 CTTAATGCCTAGCA-GTCTTCGTGTCGGTGTTTATCGGGCTTAGTGCCTAGCAAACTTCGTGCTG
1 CTTAGTGCCTAGCAGGT-TTCGTATCGATGTTTATCGGGCTTAGTGCCTAGCAGGCTTAGTGCCG
* * * * * * * **
29624 --GTGTTTATCA-AGCTTAGTGCTTAGCAGGCTTCGTGTC--AGTAT-TTATTGGG
65 ATATATTTAT-AGAGCTTTGTACCTAGCAGGCTT-GTGTCGGTGTATACTACCGGG
* * * *
29674 CTTAGTGCCTAGTAGGCTTCGTGTCGATGTTTATCGGGCTTAGTGCCTAGCAGGCTTAGTGCTGA
1 CTTAGTGCCTAGCAGGTTTCGTATCGATGTTTATCGGGCTTAGTGCCTAGCAGGCTTAGTGCCGA
* * *
29739 TGTATTTATTAG-GTTTTGTACCTAGCAGGCTTGTGTTGGTGTATACTACCGGG
66 TATATTTA-TAGAGCTTTGTACCTAGCAGGCTTGTGTCGGTGTATACTACCGGG
* * * *
29792 CTTAGTGCCTAGCAGGTTTCGTATTGTTGTTTATCGGGCTTAGTGCCTAGTAGGCTTAGTGCCGG
1 CTTAGTGCCTAGCAGGTTTCGTATCGATGTTTATCGGGCTTAGTGCCTAGCAGGCTTAGTGCCGA
* * * **
29857 TATATTTATCGAGCTTTGTGCCTAGTAGGCTTGTGTCGGTGTATACTGTCGGG
66 TATATTTATAGAGCTTTGTACCTAGCAGGCTTGTGTCGGTGTATACTACCGGG
* *
29910 CTTTGAGCCTAGCAGGTTTCGT
1 CTTAGTGCCTAGCAGGTTTCGT
29932 GTTGATGTAT
Statistics
Matches: 214, Mismatches: 35, Indels: 14
0.81 0.13 0.05
Matches are distributed among these distances:
114 55 0.26
115 5 0.02
116 23 0.11
117 7 0.03
118 124 0.58
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.37
Consensus pattern (118 bp):
CTTAGTGCCTAGCAGGTTTCGTATCGATGTTTATCGGGCTTAGTGCCTAGCAGGCTTAGTGCCGA
TATATTTATAGAGCTTTGTACCTAGCAGGCTTGTGTCGGTGTATACTACCGGG
Found at i:36518 original size:10 final size:10
Alignment explanation
Indices: 36503--36537 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
36493 AATTTTAAAG
36503 TTTTTAAATT
1 TTTTTAAATT
36513 TTTTTAAA-T
1 TTTTTAAATT
*
36522 TTTTTAATTT
1 TTTTTAAATT
36532 TTTTTA
1 TTTTTA
36538 TATAAATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TTTTTAAATT
Found at i:36519 original size:19 final size:19
Alignment explanation
Indices: 36495--36537 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 19
36485 ATTTCGTTAA
36495 TTTTAAAGTTTTTAAATTT
1 TTTTAAAGTTTTTAAATTT
* *
36514 TTTTAAATTTTTTAATTTT
1 TTTTAAAGTTTTTAAATTT
36533 TTTTA
1 TTTTA
36538 TATAAATAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTAAAGTTTTTAAATTT
Found at i:36534 original size:8 final size:9
Alignment explanation
Indices: 36495--36534 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
36485 ATTTCGTTAA
*
36495 TTTTAAAGT
1 TTTTAAATT
36504 TTTTAAATTT
1 TTTTAAA-TT
36514 TTTTAAATT
1 TTTTAAATT
36523 TTTT-AATT
1 TTTTAAATT
36531 TTTT
1 TTTT
36535 TTATATAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 8 0.28
9 13 0.45
10 8 0.28
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.70
Consensus pattern (9 bp):
TTTTAAATT
Found at i:37294 original size:62 final size:62
Alignment explanation
Indices: 37178--37294 Score: 173
Period size: 62 Copynumber: 1.9 Consensus size: 62
37168 TACTGGATAC
* * *
37178 GTGTTTTCATCGAATAATAATAATGAAAGCTTTAGAGGTGCTTCAAAACGTGTTTCTGAAAT
1 GTGTTTTCATAGAATAATAATAATGAAAACTTTAGAGGTGCTTCAAAACATGTTTCTGAAAT
**
37240 GTGTTTTCATAGAATAATAATAATGAAAACTTCT-GAGGTGCTTGGAAACATGTTT
1 GTGTTTTCATAGAATAATAATAATGAAAACTT-TAGAGGTGCTTCAAAACATGTTT
37295 TAGTAGACTC
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
62 48 0.98
63 1 0.02
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (62 bp):
GTGTTTTCATAGAATAATAATAATGAAAACTTTAGAGGTGCTTCAAAACATGTTTCTGAAAT
Found at i:42482 original size:37 final size:35
Alignment explanation
Indices: 42432--42536 Score: 129
Period size: 36 Copynumber: 2.9 Consensus size: 35
42422 TGGTCGTTAT
*
42432 TCATTTTATTCCCTATTGATCCTAAAGGTCATGATGC
1 TCATTTTACTCCCTATTGA-CC-AAAGGTCATGATGC
* *
42469 TCATTTTACTCCCTGTTGACGCAAAGGTCATTATGC
1 TCATTTTACTCCCTATTGAC-CAAAGGTCATGATGC
* *
42505 CCATTTTTCTCCCTATTGACCCAAAGGTCATG
1 TCATTTTACTCCCTATTGA-CCAAAGGTCATG
42537 CCTGTTACCA
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
36 40 0.68
37 19 0.32
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (35 bp):
TCATTTTACTCCCTATTGACCAAAGGTCATGATGC
Found at i:47724 original size:37 final size:38
Alignment explanation
Indices: 47683--47774 Score: 98
Period size: 38 Copynumber: 2.4 Consensus size: 38
47673 CATGTTCATG
47683 CAGCGACATTCTTGGGTGCAA-TTGAAGAATACTTATA
1 CAGCGACATTCTTGGGTGCAATTTGAAGAATACTTATA
* * * * *
47720 CAGCGATAGTT-TTGGATGCAATTTGAAGAGTATTTATG
1 CAGCGACA-TTCTTGGGTGCAATTTGAAGAATACTTATA
* *
47758 CAACGACAGTCTTGGGT
1 CAGCGACATTCTTGGGT
47775 CCATTCTAGA
Statistics
Matches: 43, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
37 17 0.40
38 26 0.60
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (38 bp):
CAGCGACATTCTTGGGTGCAATTTGAAGAATACTTATA
Found at i:48951 original size:17 final size:17
Alignment explanation
Indices: 48912--48960 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
48902 ATATATATGG
* *
48912 AAATGCAATGACAATAT
1 AAATGCAGTGACAATAA
* *
48929 AGATGCAGTGATAATAA
1 AAATGCAGTGACAATAA
*
48946 AAATGCAGGGACAAT
1 AAATGCAGTGACAAT
48961 TATACTACAA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.49, C:0.10, G:0.20, T:0.20
Consensus pattern (17 bp):
AAATGCAGTGACAATAA
Found at i:52226 original size:37 final size:37
Alignment explanation
Indices: 52143--52219 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
52133 AAAATATTCT
* * * *
52143 TGCGATGATAGTTTTGGGTGCAATCTAGAAGTGCTCA
1 TGCGACGACAGTTTTGGGCGAAATCTAGAAGTGCTCA
*
52180 TGCGACGACAGTTTTGGGCGAAATCTAGAAGTTCTCA
1 TGCGACGACAGTTTTGGGCGAAATCTAGAAGTGCTCA
52217 TGC
1 TGC
52220 AGCGACATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (37 bp):
TGCGACGACAGTTTTGGGCGAAATCTAGAAGTGCTCA
Found at i:59057 original size:24 final size:24
Alignment explanation
Indices: 59024--59072 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
59014 TTTTCAGGCG
*
59024 CTTTTCCTTGT-CTTGGTGCTTCTT
1 CTTTTCCTTGTCCTT-GTGCCTCTT
*
59048 CTTTTTCTTGTCCTTGTGCCTCTT
1 CTTTTCCTTGTCCTTGTGCCTCTT
59072 C
1 C
59073 CGCTTCTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 19 0.86
25 3 0.14
ACGTcount: A:0.00, C:0.29, G:0.14, T:0.57
Consensus pattern (24 bp):
CTTTTCCTTGTCCTTGTGCCTCTT
Found at i:71738 original size:13 final size:13
Alignment explanation
Indices: 71717--71747 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
71707 TTTCTCTCAT
*
71717 TTTCTTAATTTAA
1 TTTCATAATTTAA
71730 TTTCATAATTTAA
1 TTTCATAATTTAA
71743 TTTCA
1 TTTCA
71748 AATATATACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.10, G:0.00, T:0.58
Consensus pattern (13 bp):
TTTCATAATTTAA
Found at i:76630 original size:20 final size:20
Alignment explanation
Indices: 76567--76660 Score: 91
Period size: 20 Copynumber: 4.7 Consensus size: 20
76557 GAATGGACCT
* *
76567 ATTTTGACTTGTTTGAAAAAC
1 ATTTTGACTTGATT-AAAATC
** *
76588 ATTTTGAAGTG-TTAAAATG
1 ATTTTGACTTGATTAAAATC
* *
76607 ATTTTGACTTGATTCAAATT
1 ATTTTGACTTGATTAAAATC
*
76627 ATTTTGACTTGTTTAAAATC
1 ATTTTGACTTGATTAAAATC
*
76647 ATTTTAACTTGATT
1 ATTTTGACTTGATT
76661 TTAAAATTGT
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
19 13 0.22
20 37 0.63
21 9 0.15
ACGTcount: A:0.32, C:0.07, G:0.13, T:0.48
Consensus pattern (20 bp):
ATTTTGACTTGATTAAAATC
Found at i:80383 original size:24 final size:24
Alignment explanation
Indices: 80356--80406 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
80346 TGACCGAGGC
80356 CTCTCTAAACACCTAGATAATCTA
1 CTCTCTAAACACCTAGATAATCTA
80380 CTCTCTAAACACCTAGATAATCTA
1 CTCTCTAAACACCTAGATAATCTA
80404 CTC
1 CTC
80407 CAACCACTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.35, C:0.31, G:0.04, T:0.29
Consensus pattern (24 bp):
CTCTCTAAACACCTAGATAATCTA
Found at i:82163 original size:54 final size:53
Alignment explanation
Indices: 82066--82180 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 53
82056 TTTTTTTTAA
* * * *
82066 ATATATAAAAATAATAAAATTAAGATCTATGTATATATATATATGTACATATGT
1 ATATATAAAAATAATAAAA-TAAGATCTAAGTATAAATATATATATACATATAT
* *
82120 ATATATAAAAATAATAAAA-AAGAAATC-AAGATATAAATCTATATATATATATAT
1 ATATATAAAAATAATAAAATAAG--ATCTAAG-TATAAATATATATATACATATAT
82174 ATATATA
1 ATATATA
82181 TATATAGATA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
52 3 0.06
53 2 0.04
54 47 0.90
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (53 bp):
ATATATAAAAATAATAAAATAAGATCTAAGTATAAATATATATATACATATAT
Found at i:82166 original size:2 final size:2
Alignment explanation
Indices: 82159--82196 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
82149 GATATAAATC
*
82159 TA TA TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
82197 CACGTATATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:82383 original size:14 final size:14
Alignment explanation
Indices: 82358--82406 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
82348 GCCGAATACA
82358 ATTTGT-TTTTTGC
1 ATTTGTCTTTTTGC
82371 ATTTGTCTTTTTGC
1 ATTTGTCTTTTTGC
*
82385 -TCTTGTCTTCTTGC
1 AT-TTGTCTTTTTGC
*
82399 TTTTGTCT
1 ATTTGTCT
82407 CTGTTTATCC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
13 7 0.22
14 24 0.75
15 1 0.03
ACGTcount: A:0.04, C:0.16, G:0.14, T:0.65
Consensus pattern (14 bp):
ATTTGTCTTTTTGC
Found at i:82716 original size:18 final size:16
Alignment explanation
Indices: 82693--82735 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 16
82683 GGGTTTTTTT
*
82693 TTTTAATGTAAATGGACA
1 TTTTAAT-TAAATAGA-A
82711 TTTTAAATTAAATAGAA
1 TTTT-AATTAAATAGAA
82728 TTTTAATT
1 TTTTAATT
82736 TAAAATTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.17
17 5 0.22
18 11 0.48
19 3 0.13
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (16 bp):
TTTTAATTAAATAGAA
Found at i:83535 original size:85 final size:85
Alignment explanation
Indices: 83387--83543 Score: 217
Period size: 85 Copynumber: 1.8 Consensus size: 85
83377 TGCTTCATTG
* * *
83387 ATTTGGTCTACTTCTCTGTATCTCATCAGAAAGATGACCGCTTCATTGTTTCAATCCACTTCTCT
1 ATTTAGTCTACTTCTCTGTATCTCATCAGAAAGATGACCACTTCATTGTTTCAACCCACTTCTCT
*
83452 GTATCTCCTTAGGAAAACGA
66 ATATCTCCTTAGGAAAACGA
* * * * *
83472 ATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGACTATTTTATTGCTTT-GACCCACTTCTC
1 ATTTAGTCTACTTCTCTGTATCTCATCAGAAAGATGACCACTTCATTG-TTTCAACCCACTTCTC
83536 TATATCTC
65 TATATCTC
83544 ATCTAGAAGA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
85 59 0.95
86 3 0.05
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (85 bp):
ATTTAGTCTACTTCTCTGTATCTCATCAGAAAGATGACCACTTCATTGTTTCAACCCACTTCTCT
ATATCTCCTTAGGAAAACGA
Found at i:83657 original size:208 final size:208
Alignment explanation
Indices: 83108--83978 Score: 1270
Period size: 208 Copynumber: 4.2 Consensus size: 208
83098 ATTTGTTTTA
* * * * * *
83108 ACCCACTTCTCTATATCTCAT-TAAGAAGATGGGTTTTAAAGTCTCATTCGTATTGAGATTTGCC
1 ACCCACTTCTCTATATCTCATCT-AGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTTTGCT
* * * *
83172 TCATTAATTTGGTCTACTTCTCGGTATCTCATCAGGAAGATGATCATCTCATTGTTTCAATCCAC
65 TCATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCACCTCATTGTTTCAATCCAC
* *
83237 TTCACTGTATCTCATTA-GAAAGACGAATTTGGT-TCACTTCTCTGTATCTCATCAGGAAGATGA
130 TTCTCTGTATCTCATCAGGAAA-ACGAATTTGGTCT-ACTTCTCTGTATCTCATCAGGAAGATGA
**
83300 CCGCTTTATTGCTTTG
193 CCATTTTATTGCTTTG
* *
83316 ACCTACTTCTCTATATCTCATC-AGGAAGATAGGGGTTTGAAGTTTCACTCGCATTGAGCTTTGC
1 ACCCACTTCTCTATATCTCATCTA-GAAGAT-GGGGTTTGAAGTTTCACTCGTATTGAGCTTTGC
* * *
83380 TTCATTGATTTGGTCTACTTCTCTGTATCTCATC-AGAAAGATGACCGCTTCATTGTTTCAATCC
64 TTCATTGATTTGGTCTACTTCTCTGTATCTCATCAAG-AAGATGATCACCTCATTGTTTCAATCC
* * *
83444 ACTTCTCTGTATCTCCTTAGGAAAACGAATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGA
128 ACTTCTCTGTATCTCATCAGGAAAACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGA
*
83509 CTATTTTATTGCTTTG
193 CCATTTTATTGCTTTG
*
83525 ACCCACTTCTCTATATCTCATCTAGAAGATGGGGTTTGAAGTTTAACTCGTATTGAGCTTTGCTT
1 ACCCACTTCTCTATATCTCATCTAGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTTTGCTT
*
83590 CATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCCTCATTGTTTCAATCCACT
66 CATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCACCTCATTGTTTCAATCCACT
*
83655 TCTCTGTATCTCATCAGGAAAACGAATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCA
131 TCTCTGTATCTCATCAGGAAAACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCA
* *
83720 TTTTATCGCTTTT
196 TTTTATTGCTTTG
*
83733 ACCCACTTCTCTATATCTTAT-TAAGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTTTGCT
1 ACCCACTTCTCTATATCTCATCT-AGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTTTGCT
* * * * *
83797 TCATTGATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATTATTATCTCATTGATTT-AATCCA
65 TCATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCACCTCATTG-TTTCAATCCA
* *
83861 CTTCTCTGTATCTCATCAGGAAGACGGATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGAC
129 CTTCTCTGTATCTCATCAGGAAAACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGAC
* *
83926 CGTTTTATTACTTTG
194 CATTTTATTGCTTTG
*
83941 ACCCACTTCTCTATATCTCATCAAGAAGATGGGGTTTG
1 ACCCACTTCTCTATATCTCATCTAGAAGATGGGGTTTG
83979 GTCTGCCCCT
Statistics
Matches: 602, Mismatches: 50, Indels: 22
0.89 0.07 0.03
Matches are distributed among these distances:
207 2 0.00
208 413 0.69
209 181 0.30
210 6 0.01
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (208 bp):
ACCCACTTCTCTATATCTCATCTAGAAGATGGGGTTTGAAGTTTCACTCGTATTGAGCTTTGCTT
CATTGATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCACCTCATTGTTTCAATCCACT
TCTCTGTATCTCATCAGGAAAACGAATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCA
TTTTATTGCTTTG
Found at i:83739 original size:85 final size:85
Alignment explanation
Indices: 83595--83750 Score: 197
Period size: 85 Copynumber: 1.8 Consensus size: 85
83585 TGCTTCATTG
* * * *
83595 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGATCGCCTCATTGTTTCAATCCACTTCTCT
1 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATCGTTTCAACCCACTTCTCT
*
83660 GTATCTCATCAGGAAAACGA
66 ATATCTCATCAGGAAAACGA
* * ** * *
83680 ATTTGGTCTACTTCTCTGTATCTCATTAGGAAGATGACCATTTTATCGCTTT-TACCCACTTCTC
1 ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATCG-TTTCAACCCACTTCTC
83744 TATATCT
65 TATATCT
83751 TATTAAGAAG
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
85 56 0.95
86 3 0.05
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (85 bp):
ATTTGGTCTACTTCTCTGTATCTCATCAAGAAGATGACCACCTCATCGTTTCAACCCACTTCTCT
ATATCTCATCAGGAAAACGA
Found at i:83947 original size:85 final size:85
Alignment explanation
Indices: 83802--83969 Score: 221
Period size: 85 Copynumber: 2.0 Consensus size: 85
83792 TTGCTTCATT
* ** *
83802 GATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATTATTATCTCATTGATTTAATCCACTTCTC
1 GATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGACCATCTCATTGATTTAACCCACTTCTC
* *
83867 TGTATCTCATCAGGAAGACG
66 TATATCTCATCAAGAAGACG
* * * * *
83887 GATTTGGTCTACTTCTCTGTATCTCATCAGGAAGATGACCGTTTTATT-ACTTTGACCCACTTCT
1 GATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGACCATCTCATTGA-TTTAACCCACTTCT
83951 CTATATCTCATCAAGAAGA
65 CTATATCTCATCAAGAAGA
83970 TGGGGTTTGG
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 1 0.01
85 70 0.99
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.38
Consensus pattern (85 bp):
GATTTAGTCTACTTCTCTGTATCTCATCAGGAAGATGACCATCTCATTGATTTAACCCACTTCTC
TATATCTCATCAAGAAGACG
Found at i:84061 original size:46 final size:46
Alignment explanation
Indices: 83980--84149 Score: 211
Period size: 46 Copynumber: 3.7 Consensus size: 46
83970 TGGGGTTTGG
* **
83980 TCTGCCCCTCTTGAC-AAGGGGTAAAAGATCAGAATGTGGCTTCAA
1 TCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGTGGCTTCAA
* * *
84025 TCTACCCCTCTTGACTTAGAGGTAAAAGATTGGAATGCGGCTTCAA
1 TCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGTGGCTTCAA
* ** * *
84071 TTTGCCTTTCTTGACTT-GGGGTAAATGACTGG-ATGATGGCTTCAA
1 TCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATG-TGGCTTCAA
84116 TCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGA
1 TCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGA
84150 TGATCTTCAA
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
44 3 0.03
45 48 0.47
46 51 0.50
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (46 bp):
TCTGCCCCTCTTGACTTAGGGGTAAAAGATTGGAATGTGGCTTCAA
Found at i:84346 original size:49 final size:49
Alignment explanation
Indices: 84293--84594 Score: 245
Period size: 50 Copynumber: 6.1 Consensus size: 49
84283 CGTTACGACT
* * *
84293 TCAACCTTTCCCTTCATGTCTTCATGGTATCGAGTTCGCCATTGCAGCC
1 TCAACCTTTCCCTTCATATCTTCATGGTATCGAGTTTGCCGTTGCAGCC
* * * * *
84342 TCAACCTTTCCCATC-TCATCTTTTAAGGTA-CTGGGTTTGCCGTTGCGGCC
1 TCAACCTTTCCCTTCAT-ATC-TTCATGGTATC-GAGTTTGCCGTTGCAGCC
* *
84392 TCAACTTTTCCCTTCATATCTTCATGGTATC-AGATTTGCCGTTGCAACC
1 TCAACCTTTCCCTTCATATCTTCATGGTATCGAG-TTTGCCGTTGCAGCC
* * * * * * * * * *
84441 TCAATCATTCCCGTCACATCTTCTAAGGTACCCAGTTTACTGTTACAGCC
1 TCAACCTTTCCCTTCATATCTTC-ATGGTATCGAGTTTGCCGTTGCAGCC
*
84491 TCAACCTTTCCCTTCATATCTTCATGGTATCG-GATTCGCCGTTGC-GACC
1 TCAACCTTTCCCTTCATATCTTCATGGTATCGAG-TTTGCCGTTGCAG-CC
* * * * * **
84540 TCAACCTTTCCCTTTATATCTTTATAGGTATAGGGTTTGTCGTTGTGGCC
1 TCAACCTTTCCCTTCATATCTTCAT-GGTATCGAGTTTGCCGTTGCAGCC
84590 TCAAC
1 TCAAC
84595 TTTAACCATT
Statistics
Matches: 197, Mismatches: 43, Indels: 25
0.74 0.16 0.09
Matches are distributed among these distances:
48 4 0.02
49 93 0.47
50 95 0.48
51 5 0.03
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.36
Consensus pattern (49 bp):
TCAACCTTTCCCTTCATATCTTCATGGTATCGAGTTTGCCGTTGCAGCC
Found at i:84506 original size:198 final size:198
Alignment explanation
Indices: 84189--84597 Score: 506
Period size: 198 Copynumber: 2.1 Consensus size: 198
84179 TTCACTGTTA
* * * * * * * *
84189 CGGCCTCAACCTTTCTCTTCATATTTTCATGGTACCAGATTCGTCGTTGCGACGTCGATCCTTCC
1 CGGCCTCAACTTTTCCCTTCATATCTTCATGGTACCAGATTCGCCGTTGCAACCTCAATCATTCC
* * ** * *
84254 CATCGCATCTTCTAAGGTATCGGGTTCACCGTTACGACTTCAACCTTTCCCTTCATGTCTTCATG
66 CATCACATCTTCTAAGGTACCCAGTTCACCGTTACGACCTCAACCTTTCCCTTCATATCTTCATG
*
84319 GTATC-GAGTTCGCCATTGC-AGCCTCAACCTTTCCCATC-TCATCTTT-TAAGGTACT-GGGTT
131 GTATCGGA-TTCGCCATTGCGA-CCTCAACCTTTCCCTTCAT-ATCTTTAT-AGGTA-TAGGGTT
84379 TGCCGTTG
191 TGCCGTTG
* *
84387 CGGCCTCAACTTTTCCCTTCATATCTTCATGGTATCAGATTTGCCGTTGCAACCTCAATCATTCC
1 CGGCCTCAACTTTTCCCTTCATATCTTCATGGTACCAGATTCGCCGTTGCAACCTCAATCATTCC
* * *
84452 CGTCACATCTTCTAAGGTACCCAGTTTACTGTTAC-AGCCTCAACCTTTCCCTTCATATCTTCAT
66 CATCACATCTTCTAAGGTACCCAGTTCACCGTTACGA-CCTCAACCTTTCCCTTCATATCTTCAT
* * *
84516 GGTATCGGATTCGCCGTTGCGACCTCAACCTTTCCCTTTATATCTTTATAGGTATAGGGTTTGTC
130 GGTATCGGATTCGCCATTGCGACCTCAACCTTTCCCTTCATATCTTTATAGGTATAGGGTTTGCC
84581 GTTG
195 GTTG
*
84585 TGGCCTCAACTTT
1 CGGCCTCAACTTT
84598 AACCATTCAT
Statistics
Matches: 181, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
197 2 0.01
198 174 0.96
199 5 0.03
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.36
Consensus pattern (198 bp):
CGGCCTCAACTTTTCCCTTCATATCTTCATGGTACCAGATTCGCCGTTGCAACCTCAATCATTCC
CATCACATCTTCTAAGGTACCCAGTTCACCGTTACGACCTCAACCTTTCCCTTCATATCTTCATG
GTATCGGATTCGCCATTGCGACCTCAACCTTTCCCTTCATATCTTTATAGGTATAGGGTTTGCCG
TTG
Found at i:84569 original size:99 final size:99
Alignment explanation
Indices: 84154--84553 Score: 430
Period size: 99 Copynumber: 4.0 Consensus size: 99
84144 ATTGGATGAT
* * * *
84154 CTTCA-ATCTTTCTAAAGGTACCGGGTTCACTGTTACGGCCTCAACCTTTCTCTTCATATTTTCA
1 CTTCACATC-TTCT-AAGGTACCGGGTTTACCGTTACGGCCTCAACCTTTCCCTTCATATCTTCA
* * * *
84218 TGGTACCAGATTCGTCGTTGCGACGTCGATCC-TTCC
64 TGGTATCAGATTCGCCGTTGCGACCTC-AACCTTTCC
* * * * * * *
84254 CATCGCATCTTCTAAGGTATCGGGTTCACCGTTACGACTTCAACCTTTCCCTTCATGTCTTCATG
1 CTTCACATCTTCTAAGGTACCGGGTTTACCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATG
*
84319 GTATC-GAGTTCGCCATTGC-AGCCTCAACCTTTCC
66 GTATCAGA-TTCGCCGTTGCGA-CCTCAACCTTTCC
* * * * * * *
84353 CATCTCATCTTTTAAGGTACTGGGTTTGCCGTTGCGGCCTCAACTTTTCCCTTCATATCTTCATG
1 CTTCACATCTTCTAAGGTACCGGGTTTACCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATG
* * * *
84418 GTATCAGATTTGCCGTTGCAACCTCAATCATTCC
66 GTATCAGATTCGCCGTTGCGACCTCAACCTTTCC
* ** * *
84452 CGTCACATCTTCTAAGGTACCCAGTTTACTGTTACAGCCTCAACCTTTCCCTTCATATCTTCATG
1 CTTCACATCTTCTAAGGTACCGGGTTTACCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATG
*
84517 GTATCGGATTCGCCGTTGCGACCTCAACCTTTCC
66 GTATCAGATTCGCCGTTGCGACCTCAACCTTTCC
84551 CTT
1 CTT
84554 TATATCTTTA
Statistics
Matches: 248, Mismatches: 46, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
98 6 0.02
99 229 0.92
100 10 0.04
101 3 0.01
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (99 bp):
CTTCACATCTTCTAAGGTACCGGGTTTACCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATG
GTATCAGATTCGCCGTTGCGACCTCAACCTTTCC
Found at i:84584 original size:50 final size:49
Alignment explanation
Indices: 84192--84573 Score: 208
Period size: 49 Copynumber: 7.7 Consensus size: 49
84182 ACTGTTACGG
* * * *
84192 CCTCAACCTTTCTCTTCATATTTTCATGGTACCA-GATTCGTCGTTGCGA
1 CCTCAACCTTTCCCTTCATATCTTCATGGTA-TAGGATTCGCCGTTGCGA
* * * ** * * * * *
84241 CGTCGATCC-TTCCCATCGCATCTTCTAAGGTATCGGGTTCACCGTTACGA
1 CCTC-AACCTTTCCCTTCATATCTTC-ATGGTATAGGATTCGCCGTTGCGA
* * * *
84291 CTTCAACCTTTCCCTTCATGTCTTCATGGTAT-CGAGTTCGCCATTGC-A
1 CCTCAACCTTTCCCTTCATATCTTCATGGTATAGGA-TTCGCCGTTGCGA
* * * * * *
84339 GCCTCAACCTTTCCCATC-TCATCTTTTAAGGTACT-GGGTTTGCCGTTGCGG
1 -CCTCAACCTTTCCCTTCAT-ATC-TTCATGGTA-TAGGATTCGCCGTTGCGA
* * *
84390 CCTCAACTTTTCCCTTCATATCTTCATGGTATCA-GATTTGCCGTTGCAA
1 CCTCAACCTTTCCCTTCATATCTTCATGGTAT-AGGATTCGCCGTTGCGA
* * * * * * ** * *
84439 CCTCAATCATTCCCGTCACATCTTCTAAGGTACCCA-G-TTTACTGTTAC-A
1 CCTCAACCTTTCCCTTCATATCTTC-ATGGTA--TAGGATTCGCCGTTGCGA
*
84488 GCCTCAACCTTTCCCTTCATATCTTCATGGTATCGGATTCGCCGTTGCGA
1 -CCTCAACCTTTCCCTTCATATCTTCATGGTATAGGATTCGCCGTTGCGA
* *
84538 CCTCAACCTTTCCCTTTATATCTTTATAGGTATAGG
1 CCTCAACCTTTCCCTTCATATCTTCAT-GGTATAGG
84574 GTTTGTCGTT
Statistics
Matches: 245, Mismatches: 67, Indels: 41
0.69 0.19 0.12
Matches are distributed among these distances:
48 5 0.02
49 125 0.51
50 110 0.45
51 5 0.02
ACGTcount: A:0.19, C:0.30, G:0.15, T:0.36
Consensus pattern (49 bp):
CCTCAACCTTTCCCTTCATATCTTCATGGTATAGGATTCGCCGTTGCGA
Found at i:84591 original size:99 final size:99
Alignment explanation
Indices: 84154--84651 Score: 411
Period size: 99 Copynumber: 5.0 Consensus size: 99
84144 ATTGGATGAT
* ** * * *
84154 CTTCA-ATCTTTCTAAAGGTACCGGGTTCACTGTTACGGCCTCAACCTTTCTCTTCATATTTTCA
1 CTTCACATC-TTCT-AAGGTATCGGGTTTGCCGTTACGGCCTCAACCTTTCCCTTCATATCTTCA
* * * *
84218 TGGTACCAGATTCGTCGTTGCGACGTCGATCC-TTCC
64 TGGTATCAGATTCGCCGTTGCGACCTC-AACCTTTCC
* * ** * * *
84254 CATCGCATCTTCTAAGGTATCGGGTTCACCGTTACGACTTCAACCTTTCCCTTCATGTCTTCATG
1 CTTCACATCTTCTAAGGTATCGGGTTTGCCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATG
*
84319 GTATC-GAGTTCGCCATTGC-AGCCTCAACCTTTCC
66 GTATCAGA-TTCGCCGTTGCGA-CCTCAACCTTTCC
* * * * *
84353 CATCTCATCTTTTAAGGTA-CTGGGTTTGCCGTTGCGGCCTCAACTTTTCCCTTCATATCTTCAT
1 CTTCACATCTTCTAAGGTATC-GGGTTTGCCGTTACGGCCTCAACCTTTCCCTTCATATCTTCAT
* * * *
84417 GGTATCAGATTTGCCGTTGCAACCTCAATCATTCC
65 GGTATCAGATTCGCCGTTGCGACCTCAACCTTTCC
* * ** * * *
84452 CGTCACATCTTCTAAGGTACCCAGTTTACTGTTACAGCCTCAACCTTTCCCTTCATATCTTCATG
1 CTTCACATCTTCTAAGGTATCGGGTTTGCCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATG
*
84517 GTATCGGATTCGCCGTTGCGACCTCAACCTTTCC
66 GTATCAGATTCGCCGTTGCGACCTCAACCTTTCC
* * * * ** *
84551 CTTTATATCTT-TATAGGTATAGGGTTTGTCGTTGTGGCCTCAA-CTTTAACCATTCATAT-TTC
1 CTTCACATCTTCTA-AGGTATCGGGTTTGCCGTTACGGCCTCAACCTTT--CCCTTCATATCTT-
* * * * * *
84613 CAAGGTGTTATATTCGCCGTTGCGGCCTCAATC-TTCC
62 CATGGTATCAGATTCGCCGTTGCGACCTCAACCTTTCC
84650 CT
1 CT
84652 GTCAAACCTA
Statistics
Matches: 323, Mismatches: 63, Indels: 25
0.79 0.15 0.06
Matches are distributed among these distances:
98 13 0.04
99 261 0.81
100 46 0.14
101 3 0.01
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.36
Consensus pattern (99 bp):
CTTCACATCTTCTAAGGTATCGGGTTTGCCGTTACGGCCTCAACCTTTCCCTTCATATCTTCATG
GTATCAGATTCGCCGTTGCGACCTCAACCTTTCC
Found at i:84592 original size:50 final size:49
Alignment explanation
Indices: 84189--84651 Score: 212
Period size: 50 Copynumber: 9.4 Consensus size: 49
84179 TTCACTGTTA
* * * *
84189 CGGCCTCAACCTTTCTCTTCATATTTTCATGGTACCA-GATTCGTCGTTG
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTA-TAGGATTCGCCGTTG
* * * * ** * * * * *
84238 CGACGTCGATCC-TTCCCATCGCATCTTCTAAGGTATCGGGTTCACCGTTA
1 CGGCCTC-AACCTTTCCCTTCATATCTTC-ATGGTATAGGATTCGCCGTTG
* * * * *
84288 CGACTTCAACCTTTCCCTTCATGTCTTCATGGTAT-CGAGTTCGCCATTG
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTATAGGA-TTCGCCGTTG
* * * * * *
84337 CAGCCTCAACCTTTCCCATC-TCATCTTTTAAGGTACT-GGGTTTGCCGTTG
1 CGGCCTCAACCTTTCCCTTCAT-ATC-TTCATGGTA-TAGGATTCGCCGTTG
* *
84387 CGGCCTCAACTTTTCCCTTCATATCTTCATGGTATCA-GATTTGCCGTTG
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTAT-AGGATTCGCCGTTG
** * * * * * * ** * *
84436 CAACCTCAATCATTCCCGTCACATCTTCTAAGGTACCCA-G-TTTACTGTTA
1 CGGCCTCAACCTTTCCCTTCATATCTTC-ATGGTA--TAGGATTCGCCGTTG
* *
84486 CAGCCTCAACCTTTCCCTTCATATCTTCATGGTATCGGATTCGCCGTTG
1 CGGCCTCAACCTTTCCCTTCATATCTTCATGGTATAGGATTCGCCGTTG
* * * * * *
84535 CGACCTCAACCTTTCCCTTTATATCTTTATAGGTATAGGGTTTGTCGTTG
1 CGGCCTCAACCTTTCCCTTCATATCTTCAT-GGTATAGGATTCGCCGTTG
* * * * *
84585 TGGCCTCAA-CTTTAACCATTCATAT-TTCCAAGGTGTTA-TATTCGCCGTTG
1 CGGCCTCAACCTTT--CCCTTCATATCTT-CATGGT-ATAGGATTCGCCGTTG
*
84635 CGGCCTCAATC-TTCCCT
1 CGGCCTCAACCTTTCCCT
84652 GTCAAACCTA
Statistics
Matches: 303, Mismatches: 89, Indels: 45
0.69 0.20 0.10
Matches are distributed among these distances:
48 7 0.02
49 130 0.43
50 149 0.49
51 17 0.06
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.36
Consensus pattern (49 bp):
CGGCCTCAACCTTTCCCTTCATATCTTCATGGTATAGGATTCGCCGTTG
Found at i:85576 original size:16 final size:16
Alignment explanation
Indices: 85555--85587 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
85545 TGATCTCTCC
85555 TTTTCTTTTTCCTTTT
1 TTTTCTTTTTCCTTTT
85571 TTTTCTTTTTCCTTTT
1 TTTTCTTTTTCCTTTT
85587 T
1 T
85588 CTTTTATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTCTTTTTCCTTTT
Found at i:85611 original size:15 final size:15
Alignment explanation
Indices: 85591--85637 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 15
85581 CCTTTTTCTT
85591 TTATTTTTATTTTTC
1 TTATTTTTATTTTTC
*
85606 TTATTTTTCTTATTTC
1 TTATTTTTATT-TTTC
85622 TTATTTATTTATTTTT
1 TTA-TT-TTTATTTTT
85638 ATTTATCGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 10 0.37
16 7 0.26
17 5 0.19
18 5 0.19
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (15 bp):
TTATTTTTATTTTTC
Found at i:85618 original size:24 final size:24
Alignment explanation
Indices: 85560--85637 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
85550 TCTCCTTTTC
* *
85560 TTTTTCCTTTTTTTTCTTTTTCCTT-
1 TTTTT-CTTATTTTTATTTTT-CTTA
85585 TTTCTT-TTATTTTTATTTTTCTTA
1 TTT-TTCTTATTTTTATTTTTCTTA
*
85609 TTTTTCTTATTTCTTATTTAT-TTA
1 TTTTTCTTATTT-TTATTTTTCTTA
85633 TTTTT
1 TTTTT
85638 ATTTATCGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 5 0.11
24 29 0.63
25 10 0.22
26 2 0.04
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (24 bp):
TTTTTCTTATTTTTATTTTTCTTA
Found at i:85633 original size:39 final size:40
Alignment explanation
Indices: 85555--85641 Score: 108
Period size: 39 Copynumber: 2.2 Consensus size: 40
85545 TGATCTCTCC
* * *
85555 TTTTCTTTTTCCTTTTTTTTCTTTTTCCTTTTTCTTTTAT
1 TTTTATTTTTCCTTATTTTTCTTTTTCCTTTTTCATTTAT
85595 TTTTATTTTT-CTTATTTTTCTTATTT-CTTATTT-ATTTAT
1 TTTTATTTTTCCTTATTTTTCTT-TTTCCTT-TTTCATTTAT
85634 TTTTATTT
1 TTTTATTT
85642 ATCGAATCCG
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
39 27 0.64
40 15 0.36
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.79
Consensus pattern (40 bp):
TTTTATTTTTCCTTATTTTTCTTTTTCCTTTTTCATTTAT
Found at i:86591 original size:14 final size:15
Alignment explanation
Indices: 86567--86595 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
86557 TTTCGACCCA
86567 TCTTTTCTTCTTTTT
1 TCTTTTCTTCTTTTT
86582 TCTTTT-TTCTTTTT
1 TCTTTTCTTCTTTTT
86596 ATTTTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (15 bp):
TCTTTTCTTCTTTTT
Found at i:86591 original size:17 final size:18
Alignment explanation
Indices: 86569--86606 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
86559 TCGACCCATC
86569 TTTTCTTCTT-TTTTCTT
1 TTTTCTTCTTATTTTCTT
*
86586 TTTTCTTTTTATTTTCTT
1 TTTTCTTCTTATTTTCTT
86604 TTT
1 TTT
86607 GATAACACGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTCTTCTTATTTTCTT
Found at i:86860 original size:22 final size:23
Alignment explanation
Indices: 86832--86886 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
86822 TCGTTTCCAG
*
86832 TCTTAAAGTT-TTTCTTGATCAT
1 TCTTAAAGTTAATTCTTGATCAT
86854 TCTTAAAGTTACATTCTTGATCAT
1 TCTTAAAGTTA-ATTCTTGATCAT
86878 T-TTCAAAGT
1 TCTT-AAAGT
86887 CTTAAAGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 10 0.34
23 2 0.07
24 17 0.59
ACGTcount: A:0.27, C:0.15, G:0.09, T:0.49
Consensus pattern (23 bp):
TCTTAAAGTTAATTCTTGATCAT
Found at i:90330 original size:2 final size:2
Alignment explanation
Indices: 90323--90349 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
90313 ATATCTATGC
90323 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
90350 AATAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:90925 original size:17 final size:18
Alignment explanation
Indices: 90885--90932 Score: 55
Period size: 17 Copynumber: 2.7 Consensus size: 18
90875 GGTTTTTTTT
*
90885 ATTTT-AATGTAAATGGAC
1 ATTTTAAAT-TAAATAGAC
90903 ATTTTAAATTAAATAGA-
1 ATTTTAAATTAAATAGAC
*
90920 ATTTTAATTTAAA
1 ATTTTAAATTAAA
90933 ATTTTAGTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 12 0.44
18 12 0.44
19 3 0.11
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (18 bp):
ATTTTAAATTAAATAGAC
Found at i:90934 original size:18 final size:18
Alignment explanation
Indices: 90885--90932 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
90875 GGTTTTTTTT
* *
90885 ATTTTAATGTAAATGGAC
1 ATTTTAATTTAAATAGAC
*
90903 ATTTTAAATTAAATAGA-
1 ATTTTAATTTAAATAGAC
90920 ATTTTAATTTAAA
1 ATTTTAATTTAAA
90933 ATTTTAGTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (18 bp):
ATTTTAATTTAAATAGAC
Found at i:98106 original size:51 final size:51
Alignment explanation
Indices: 98030--98131 Score: 204
Period size: 51 Copynumber: 2.0 Consensus size: 51
98020 CAAAAAATGC
98030 CCGTTTGTTTCAACTATCACGGAGAGTTGAAGTCGTGACCAACACGTTAGG
1 CCGTTTGTTTCAACTATCACGGAGAGTTGAAGTCGTGACCAACACGTTAGG
98081 CCGTTTGTTTCAACTATCACGGAGAGTTGAAGTCGTGACCAACACGTTAGG
1 CCGTTTGTTTCAACTATCACGGAGAGTTGAAGTCGTGACCAACACGTTAGG
98132 GCACGAAGTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (51 bp):
CCGTTTGTTTCAACTATCACGGAGAGTTGAAGTCGTGACCAACACGTTAGG
Found at i:98647 original size:29 final size:29
Alignment explanation
Indices: 98615--98853 Score: 155
Period size: 29 Copynumber: 8.1 Consensus size: 29
98605 AAAATCGAAC
* * *
98615 TTTTGGAAATTTGAGGTTGAAAATGTGAT
1 TTTTGGAAATTTGAGGGTCAAAATATGAT
* * *
98644 TTTTGGAAATTTGGGGGGT-AAAAT-GGTAA
1 TTTTGGAAATTT-GAGGGTCAAAATATG-AT
* *
98673 TTTTGGAAAGTTTG-GGGTTAAAATATAAT
1 TTTTGGAAA-TTTGAGGGTCAAAATATGAT
* * * * *
98702 TTTTAGAAGTTTAAGGGTCAAAATGTAAT
1 TTTTGGAAATTTGAGGGTCAAAATATGAT
* *
98731 TTTTGAGAAGTTT-ATGGTCAAAATATGAT
1 TTTTG-GAAATTTGAGGGTCAAAATATGAT
* *
98760 TTTTGAGAAGTTT-AGGGGTTAAAATATGAT
1 TTTTG-GAAATTTGA-GGGTCAAAATATGAT
* * * * *
98790 TTTTGAGCAGTTCGAGGGTCAACATGTGAT
1 TTTTG-GAAATTTGAGGGTCAAAATATGAT
* *
98820 TTTTAGAAAGTTTGGGGGTCAAAATATGAT
1 TTTTGGAAA-TTTGAGGGTCAAAATATGAT
98850 TTTT
1 TTTT
98854 AAAAAGTTTG
Statistics
Matches: 170, Mismatches: 30, Indels: 19
0.78 0.14 0.09
Matches are distributed among these distances:
28 8 0.05
29 87 0.51
30 74 0.44
31 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.26, T:0.39
Consensus pattern (29 bp):
TTTTGGAAATTTGAGGGTCAAAATATGAT
Found at i:98725 original size:58 final size:56
Alignment explanation
Indices: 98615--98844 Score: 176
Period size: 58 Copynumber: 3.9 Consensus size: 56
98605 AAAATCGAAC
* * * *
98615 TTTTGGAAA-TTTGAGGTTGAAAATGTGATTTTTGGAAATTTGGGGGGTAAAATGGTAA
1 TTTTGGAAAGTTTGAGGTT-AAAATATGATTTTTAGAAGTTT-AGGGGTAAAAT-GTAA
* * *
98673 TTTTGGAAAGTTTGGGGTTAAAATATAATTTTTAGAAGTTTAAGGGTCAAAATGTAA
1 TTTTGGAAAGTTTGAGGTTAAAATATGATTTTTAGAAGTTTAGGGGT-AAAATGTAA
* * * *
98730 TTTTTGAGAAGTTT-ATGGTCAAAATATGATTTTTGAGAAGTTTAGGGGTTAAAATATGA
1 TTTTGGA-AAGTTTGA-GGTTAAAATATGATTTTT-AGAAGTTTAGGGG-TAAAATGTAA
* * * * * * *
98789 TTTTTGAGCAGTTCGAGGGTCAACATGTGATTTTTAGAAAGTTTGGGGGTCAAAAT
1 TTTTGGA-AAGTTTGA-GGTTAAAATATGATTTTTAG-AAGTTTAGGGGT-AAAAT
98845 ATGATTTTTA
Statistics
Matches: 143, Mismatches: 20, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
57 14 0.10
58 54 0.38
59 42 0.29
60 33 0.23
ACGTcount: A:0.32, C:0.03, G:0.27, T:0.38
Consensus pattern (56 bp):
TTTTGGAAAGTTTGAGGTTAAAATATGATTTTTAGAAGTTTAGGGGTAAAATGTAA
Found at i:98742 original size:30 final size:29
Alignment explanation
Indices: 98670--98885 Score: 170
Period size: 30 Copynumber: 7.3 Consensus size: 29
98660 GGTAAAATGG
* * *
98670 TAATTTTGGA-AAGTTTGGGGTTAAAATA
1 TAATTTTTGAGAAGTTTAGGGTCAAAATA
*
98698 TAATTTTT-AGAAGTTTAAGGGTCAAAATG
1 TAATTTTTGAGAAGTTT-AGGGTCAAAATA
*
98727 TAATTTTTGAGAAGTTTATGGTCAAAATA
1 TAATTTTTGAGAAGTTTAGGGTCAAAATA
* *
98756 TGATTTTTGAGAAGTTTAGGGGTTAAAATA
1 TAATTTTTGAGAAGTTTA-GGGTCAAAATA
* * * * *
98786 TGATTTTTGAGCAGTTCGAGGGTCAACATG
1 TAATTTTTGAGAAGTT-TAGGGTCAAAATA
* *
98816 TGATTTTT-AGAAAGTTTGGGGGTCAAAATA
1 TAATTTTTGAG-AAGTTT-AGGGTCAAAATA
* * * *
98846 TGATTTTTAAAAAGTTT-GGCGATCAAAATG
1 TAATTTTTGAGAAGTTTAGG-G-TCAAAATA
*
98876 TATTTTTTGA
1 TAATTTTTGA
98886 CAAAACAGGG
Statistics
Matches: 154, Mismatches: 24, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
27 1 0.01
28 15 0.10
29 47 0.31
30 89 0.58
31 2 0.01
ACGTcount: A:0.33, C:0.04, G:0.23, T:0.39
Consensus pattern (29 bp):
TAATTTTTGAGAAGTTTAGGGTCAAAATA
Found at i:98793 original size:59 final size:58
Alignment explanation
Indices: 98634--98862 Score: 201
Period size: 60 Copynumber: 3.9 Consensus size: 58
98624 TTTGAGGTTG
* * * * * * * *
98634 AAAATGTGATTTTTGGAAATTTGGGGGGT-AAAATGGTAATTTTGGA-AAGTTTGGGGTT
1 AAAATATGATTTTTAGAAGTTT-AGGGGTCAAAAT-ATAATTTTTGAGAAGTTTAGGGTC
* * * *
98692 AAAATATAATTTTTAGAAGTTTAAGGGTCAAAATGTAATTTTTGAGAAGTTTATGGTC
1 AAAATATGATTTTTAGAAGTTTAGGGGTCAAAATATAATTTTTGAGAAGTTTAGGGTC
* * * *
98750 AAAATATGATTTTTGAGAAGTTTAGGGGTTAAAATATGATTTTTGAGCAGTTCGAGGGTC
1 AAAATATGATTTTT-AGAAGTTTAGGGGTCAAAATATAATTTTTGAGAAGTT-TAGGGTC
* * * * * *
98810 AACATGTGATTTTTAGAAAGTTTGGGGGTCAAAATATGATTTTTAAAAAGTTT
1 AAAATATGATTTTTAG-AAGTTTAGGGGTCAAAATATAATTTTTGAGAAGTTT
98863 GGCGATCAAA
Statistics
Matches: 140, Mismatches: 26, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
57 14 0.10
58 45 0.32
59 34 0.24
60 47 0.34
ACGTcount: A:0.34, C:0.03, G:0.25, T:0.38
Consensus pattern (58 bp):
AAAATATGATTTTTAGAAGTTTAGGGGTCAAAATATAATTTTTGAGAAGTTTAGGGTC
Found at i:100593 original size:11 final size:11
Alignment explanation
Indices: 100565--100609 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
100555 ATTTGGACAT
*
100565 TTTAAACTTAA
1 TTTAAATTTAA
100576 TTTTAAATTTAA
1 -TTTAAATTTAA
* *
100588 TTTAAAATAAA
1 TTTAAATTTAA
100599 TTTAAATTTAA
1 TTTAAATTTAA
100610 AATAAATTCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:100604 original size:6 final size:6
Alignment explanation
Indices: 100565--100685 Score: 69
Period size: 6 Copynumber: 21.0 Consensus size: 6
100555 ATTTGGACAT
* * *
100565 TTTAAA CTTAAT TTTAAA TTT-AA TTTAAA -ATAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
* * * * * *
100611 -ATAAA TTCAAA CTCAACA --TAAG TTTAAA TTTAAA -ATAAA TTTAAA
1 TTTAAA TTTAAA TTTAA-A TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
100656 TTTAAA --AAAA TTTAAAA TTTAAAA TTTAAA
1 TTTAAA TTTAAA TTT-AAA TTT-AAA TTTAAA
100686 ATTGGGTTCC
Statistics
Matches: 88, Mismatches: 17, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
4 3 0.03
5 19 0.22
6 52 0.59
7 14 0.16
ACGTcount: A:0.55, C:0.04, G:0.01, T:0.40
Consensus pattern (6 bp):
TTTAAA
Found at i:100606 original size:17 final size:17
Alignment explanation
Indices: 100579--100680 Score: 136
Period size: 17 Copynumber: 6.1 Consensus size: 17
100569 AACTTAATTT
100579 TAAATTT-AATTTAAAA
1 TAAATTTAAATTTAAAA
100595 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
* * * *
100612 TAAATTCAAACTCAACA
1 TAAATTTAAATTTAAAA
*
100629 TAAGTTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
100646 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
100663 -AAATTTAAAATTTAAAA
1 TAAATTT-AAATTTAAAA
100680 T
1 T
100681 TTAAAATTGG
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
16 13 0.18
17 60 0.82
ACGTcount: A:0.57, C:0.04, G:0.01, T:0.38
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:100674 original size:7 final size:7
Alignment explanation
Indices: 100662--100688 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
100652 TAAATTTAAA
100662 AAAATTT
1 AAAATTT
100669 AAAATTT
1 AAAATTT
100676 AAAATTT
1 AAAATTT
100683 AAAATT
1 AAAATT
100689 GGGTTCCATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAAATTT
Found at i:101167 original size:39 final size:39
Alignment explanation
Indices: 101117--101598 Score: 244
Period size: 39 Copynumber: 12.4 Consensus size: 39
101107 CCATGATCGA
* * *
101117 GGTAAGAGATTGGATGATGATGATCTGCCATAGGCTCGA
1 GGTAAGAGATTGGATGATGGTGATCTGCCCTAGGCTCGG
* *
101156 GGTAAGAGATT-GACTGATGGTGATCTACCCCAGGCTCGG
1 GGTAAGAGATTGGA-TGATGGTGATCTGCCCTAGGCTCGG
*
101195 GGTAAGAGA-TCGA--ATGGCTGCAATCTG-CCTCAGGCTCGG
1 GGTAAGAGATTGGATGATGG-TG--ATCTGCCCT-AGGCTCGG
* * *
101234 GGTAAGAGATTAGCTAATGGTGATCTGCCCTAGGCTCGG
1 GGTAAGAGATTGGATGATGGTGATCTGCCCTAGGCTCGG
* * * * *
101273 GGTAAGAGA-T-CA-AATGGCTGCAATCTGCCCCAAGCTTGG
1 GGTAAGAGATTGGATGATGG-TG--ATCTGCCCTAGGCTCGG
* *
101312 GGTAAGAGATTGGCTGATGGTGATCTGCCCTAAGCTCGG
1 GGTAAGAGATTGGATGATGGTGATCTGCCCTAGGCTCGG
* * *
101351 GGTAAGAGA-TCGA-GCA-GCTGCATTCTG-CCTCAGGCTCGA
1 GGTAAGAGATTGGATG-ATGGTG-A-TCTGCCCT-AGGCTCGG
* * * * *
101390 GATGAGAGATT-GACTTG-TGGTGATCTG-TCTCAAGCTCAG
1 GGTAAGAGATTGGA--TGATGGTGATCTGCCCT-AGGCTCGG
*** * * * * *
101429 GGTAAGAGATCAAACGACT--TCAATTTGCCTTAGGCTCGA
1 GGTAAGAGATTGGATGA-TGGT-GATCTGCCCTAGGCTCGG
* * * * * * *
101468 GGTAAGAGATCGGACGGTTGTAATCTGCCCCATGCTCGG
1 GGTAAGAGATTGGATGATGGTGATCTGCCCTAGGCTCGG
* * *
101507 GGTAAGAGATTGGTTGATGATGATCTGCCTTAGGCTCGG
1 GGTAAGAGATTGGATGATGGTGATCTGCCCTAGGCTCGG
** * **
101546 GGTAAGAGACCGGATGATTGCAATCTG-CCTCAGGCTCGG
1 GGTAAGAGATTGGATGATGGTGATCTGCCCT-AGGCTCGG
*
101585 GGTAAAAGATTGGA
1 GGTAAGAGATTGGA
101599 ATCTTCAATC
Statistics
Matches: 338, Mismatches: 72, Indels: 66
0.71 0.15 0.14
Matches are distributed among these distances:
36 9 0.03
37 8 0.02
38 18 0.05
39 275 0.81
40 12 0.04
41 7 0.02
42 9 0.03
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (39 bp):
GGTAAGAGATTGGATGATGGTGATCTGCCCTAGGCTCGG
Found at i:101230 original size:78 final size:78
Alignment explanation
Indices: 101139--101516 Score: 395
Period size: 78 Copynumber: 4.8 Consensus size: 78
101129 GATGATGATG
* *
101139 ATCTGCCAT-AGGCTCGAGGTAAGAGATTGACTGATGGTGATCTACCCCAGGCTCGGGGTAAGAG
1 ATCTGCC-TCAGGCTCGAGGTAAGAGATTGACTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAG
* *
101203 ATCGAATGGCTGCA
65 ATCAAACGGCTGCA
* * * *
101217 ATCTGCCTCAGGCTCGGGGTAAGAGATT-AGCTAATGGTGATCTGCCCTAGGCTCGGGGTAAGAG
1 ATCTGCCTCAGGCTCGAGGTAAGAGATTGA-CTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAG
*
101281 ATCAAATGGCTGCA
65 ATCAAACGGCTGCA
* * * * * *
101295 ATCTGCCCCAAGCTTGGGGTAAGAGATTGGCTGATGGTGATCTGCCCTAAGCTCGGGGTAAGAGA
1 ATCTGCCTCAGGCTCGAGGTAAGAGATTGACTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
* * *
101360 TCGAGCAGCTGCA
66 TCAAACGGCTGCA
* * * * * *
101373 TTCTGCCTCAGGCTCGAGATGAGAGATTGACTTG-TGGTGATCTGTCTCAAGCTCAGGGTAAGAG
1 ATCTGCCTCAGGCTCGAGGTAAGAGATTGAC-TGATGGTGATCTGCCCCAAGCTCGGGGTAAGAG
* *
101437 ATCAAACGACTTCA
65 ATCAAACGGCTGCA
* * * * * * *
101451 ATTTGCCTTAGGCTCGAGGTAAGAGATCGGAC-GGTTGTAATCTGCCCCATGCTCGGGGTAAGAG
1 ATCTGCCTCAGGCTCGAGGTAAGAGAT-TGACTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAG
101515 AT
65 AT
101517 TGGTTGATGA
Statistics
Matches: 250, Mismatches: 44, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
77 3 0.01
78 242 0.97
79 5 0.02
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.24
Consensus pattern (78 bp):
ATCTGCCTCAGGCTCGAGGTAAGAGATTGACTGATGGTGATCTGCCCCAAGCTCGGGGTAAGAGA
TCAAACGGCTGCA
Found at i:109659 original size:6 final size:6
Alignment explanation
Indices: 109643--109678 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
109633 GCCAAATGGT
* *
109643 CTTGCA ATTGCA CTTGCA CTTGCA CTTGCT CTTGCA
1 CTTGCA CTTGCA CTTGCA CTTGCA CTTGCA CTTGCA
109679 TTTCCTTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.36
Consensus pattern (6 bp):
CTTGCA
Found at i:110565 original size:20 final size:20
Alignment explanation
Indices: 110537--110575 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
110527 GAACGAAGCT
110537 TCTTATAAA-CCTTCTTCAAG
1 TCTTATAAATCC-TCTTCAAG
*
110557 TCTTTTAAATCCTCTTCAA
1 TCTTATAAATCCTCTTCAA
110576 CTTTGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.28, C:0.26, G:0.03, T:0.44
Consensus pattern (20 bp):
TCTTATAAATCCTCTTCAAG
Found at i:113819 original size:30 final size:29
Alignment explanation
Indices: 113785--114056 Score: 171
Period size: 30 Copynumber: 9.1 Consensus size: 29
113775 AAAATCGAAC
*
113785 TTTTGGAAAATTTAAGGTTAAAAATGTGAT
1 TTTTGGAAAGTTTAAGGTT-AAAATGTGAT
* *
113815 TTTTGGAAA-TTTAAGGGGTAAAATG-GTAA
1 TTTTGGAAAGTTTAA-GGTTAAAATGTG-AT
* *
113844 TTTTGAAAAAGTTTGAGGTTAAAATGT-ATT
1 TTTTG-GAAAGTTTAAGGTTAAAATGTGA-T
** *
113874 TTTTGG-AAGTTTGGGGATTAAAATGTAAT
1 TTTTGGAAAGTTTAAGG-TTAAAATGTGAT
* *
113903 TTTT-TAGAAGTTTAAAGGTCAAAATGTGAT
1 TTTTGGA-AAGTTT-AAGGTTAAAATGTGAT
* *
113933 TTTT-TAGAAGTTTAAGGGTTAAAATGTGAG
1 TTTTGGA-AAGTTTAA-GGTTAAAATGTGAT
* * * * *
113963 TTTT-AAGAAGTTCGAGGGTCAAAATATGAT
1 TTTTGGA-AAGTT-TAAGGTTAAAATGTGAT
** *
113993 TTTTGGAAAGTTTGGGAGTCAAAATGTGAT
1 TTTTGGAAAGTTTAAG-GTTAAAATGTGAT
* *
114023 TTTTGGAAAGTTTAAGTGTCAAAATATGAT
1 TTTTGGAAAGTTTAAG-GTTAAAATGTGAT
114053 TTTT
1 TTTT
114057 AGACAAAATA
Statistics
Matches: 198, Mismatches: 29, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
28 10 0.05
29 36 0.18
30 144 0.73
31 8 0.04
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.40
Consensus pattern (29 bp):
TTTTGGAAAGTTTAAGGTTAAAATGTGAT
Found at i:113955 original size:60 final size:58
Alignment explanation
Indices: 113795--114056 Score: 217
Period size: 60 Copynumber: 4.4 Consensus size: 58
113785 TTTTGGAAAA
* * * * *
113795 TTTAAGGTTAAAAATGTGA-TTTTTGGAAATTTAAGGGGTAAAATGGTAATTTTGAAAAAG
1 TTTAAGG-TCAAAATGTGATTTTTTGGAAGTTT-AGGGTTAAAAT-GTAATTTTTAAGAAG
* * * *
113855 TTTGAGGTTAAAATGT-ATTTTTTGGAAGTTTGGGGATTAAAATGTAATTTTTTAGAAG
1 TTTAAGGTCAAAATGTGATTTTTTGGAAGTTTAGGG-TTAAAATGTAATTTTTAAGAAG
* * *
113913 TTTAAAGGTCAAAATGTGATTTTTTAGAAGTTTAAGGGTTAAAATGTGAGTTTTAAGAAG
1 TTT-AAGGTCAAAATGTGATTTTTTGGAAGTTT-AGGGTTAAAATGTAATTTTTAAGAAG
* * * * * * *
113973 TTCGAGGGTCAAAATATGA-TTTTTGGAAAGTTTGGGAGTCAAAATGTGATTTTT-GGAAAG
1 TT-TAAGGTCAAAATGTGATTTTTTGG-AAGTTTAGG-GTTAAAATGTAATTTTTAAG-AAG
*
114033 TTTAAGTGTCAAAATATGATTTTT
1 TTTAAG-GTCAAAATGTGATTTTT
114057 AGACAAAATA
Statistics
Matches: 166, Mismatches: 25, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
58 19 0.11
59 48 0.29
60 92 0.55
61 7 0.04
ACGTcount: A:0.35, C:0.02, G:0.24, T:0.40
Consensus pattern (58 bp):
TTTAAGGTCAAAATGTGATTTTTTGGAAGTTTAGGGTTAAAATGTAATTTTTAAGAAG
Found at i:115782 original size:11 final size:11
Alignment explanation
Indices: 115754--115816 Score: 63
Period size: 11 Copynumber: 5.5 Consensus size: 11
115744 ATTTGAACAT
*
115754 TTTAAACTTAA
1 TTTAAATTTAA
115765 TTTTAAATTTAA
1 -TTTAAATTTAA
* *
115777 TTTAAAATAAA
1 TTTAAATTTAA
115788 TTTAAATTTAA
1 TTTAAATTTAA
**
115799 AATAAATTTAAA
1 TTTAAATTT-AA
115811 TTTAAA
1 TTTAAA
115817 CAAATTAAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
11 25 0.61
12 16 0.39
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (11 bp):
TTTAAATTTAA
Found at i:115793 original size:6 final size:6
Alignment explanation
Indices: 115754--115816 Score: 69
Period size: 6 Copynumber: 11.0 Consensus size: 6
115744 ATTTGAACAT
* * *
115754 TTTAAA CTTAAT TTTAAA TTT-AA TTTAAA -ATAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA TTTAAA
*
115800 -ATAAA TTTAAA TTTAAA
1 TTTAAA TTTAAA TTTAAA
115817 CAAATTAAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
5 13 0.28
6 33 0.72
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (6 bp):
TTTAAA
Found at i:115795 original size:17 final size:17
Alignment explanation
Indices: 115768--115834 Score: 102
Period size: 17 Copynumber: 4.1 Consensus size: 17
115758 AACTTAATTT
115768 TAAATTT-AATTTAAAA
1 TAAATTTAAATTTAAAA
115784 TAAATTTAAATTTAAAA
1 TAAATTTAAATTTAAAA
115801 TAAATTTAAATTT-AAA
1 TAAATTTAAATTTAAAA
* *
115817 CAAATTAAAATTTAAAA
1 TAAATTTAAATTTAAAA
115834 T
1 T
115835 TGGGTTTCAT
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
16 21 0.46
17 25 0.54
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (17 bp):
TAAATTTAAATTTAAAA
Found at i:115809 original size:33 final size:33
Alignment explanation
Indices: 115768--115834 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 33
115758 AACTTAATTT
* *
115768 TAAATTT-AATTTAAAATAAATTTAAATTTAAAA
1 TAAATTTAAATTT-AAACAAATTAAAATTTAAAA
115801 TAAATTTAAATTTAAACAAATTAAAATTTAAAA
1 TAAATTTAAATTTAAACAAATTAAAATTTAAAA
115834 T
1 T
115835 TGGGTTTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 26 0.84
34 5 0.16
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (33 bp):
TAAATTTAAATTTAAACAAATTAAAATTTAAAA
Found at i:116801 original size:76 final size:76
Alignment explanation
Indices: 116624--116809 Score: 185
Period size: 76 Copynumber: 2.4 Consensus size: 76
116614 GTCATCTAGC
* * * * ** *
116624 TATTAGAATACCGAAGATTGTGATCTTAAATCAAGTGAACCTTAAAAATATCAACTTTGAATGTA
1 TATTAGAAAACCAAAGGTTGTGATCTTAAATCAAGCGAACCTTAAAAATATCAACAGTGAACGTA
*
116689 GGTCACCGAGA
66 GGTCAACGAGA
* * * * * * *
116700 TATTAGAATACCAAAGGTCGCGATCTTAAATCGAGCGTACCTTAATAATATCAGCAGTGAACGTA
1 TATTAGAAAACCAAAGGTTGTGATCTTAAATCAAGCGAACCTTAAAAATATCAACAGTGAACGTA
*
116765 GGTCAACGAGT
66 GGTCAACGAGA
* * *
116776 TGTTAGAAAATC-GAGAGTTGTGATCTTAAATCAA
1 TATTAGAAAACCAAAG-GTTGTGATCTTAAATCAA
116810 TAGACTGTAA
Statistics
Matches: 88, Mismatches: 21, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
75 2 0.02
76 86 0.98
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (76 bp):
TATTAGAAAACCAAAGGTTGTGATCTTAAATCAAGCGAACCTTAAAAATATCAACAGTGAACGTA
GGTCAACGAGA
Found at i:116930 original size:75 final size:75
Alignment explanation
Indices: 116846--117325 Score: 363
Period size: 75 Copynumber: 6.5 Consensus size: 75
116836 CGATTAGGGA
* * *
116846 ACCGTAAAAATATCAATTGTGGACGTTGGTCAATGAGCTTTTAGAAAATCGAGGGTCACGATCTT
1 ACCGTAAAAATATCAATTGTGAACGTAGGTCAATGAGCTTTTAGAAAATCGAGGGTCGCGATCTT
*
116911 AAATTAGTGG
66 AAATCAGTGG
* ** * * *
116921 ACCTTAAAAATATCAGCTGTGAACGTAGGTCAACGAGC-TGTAGGAATATCGAGGGTCGCGATC-
1 ACCGTAAAAATATCAATTGTGAACGTAGGTCAATGAGCTTTTA-GAAAATCGAGGGTCGCGATCT
116984 --AA-CA---G
65 TAAATCAGTGG
** * * * *
116989 ATTGTAAAAATATCAGTTGTGAACGTAGGTCAGCT-AG-TTGTTAGAAAATCAAGGGTCGTGATC
1 ACCGTAAAAATATCAATTGTGAACGTAGGTCA-ATGAGCTT-TTAGAAAATCGAGGGTCGCGATC
* **
117052 TTAAATTAGCAG
64 TTAAATCAGTGG
* * * * ** *
117064 ATCATAAAAATATCAATTGTGAACGTAGATCAATGAGCTGTTAGAAAATCGAGGGTCATGGTCTT
1 ACCGTAAAAATATCAATTGTGAACGTAGGTCAATGAGCTTTTAGAAAATCGAGGGTCGCGATCTT
* *
117129 AAATCAGCGA
66 AAATCAGTGG
* * * * * ** * *
117139 AACGTCAAAATATCAGTTGTGAATGCAGGTCAGCGAG-TTATTAGAAAATTGAGGGTCGCAATCT
1 ACCGTAAAAATATCAATTGTGAACGTAGGTCAATGAGCTT-TTAGAAAATCGAGGGTCGCGATCT
* *
117203 TAAATCATTAG
65 TAAATCAGTGG
* ** * * * * * *
117214 ACCGTAGAAAATATCAATTGTGAACATAGGTCAGCGTGCTGTTA-ATAGACCGAGGGTTGTGATC
1 ACCGTA-AAAATATCAATTGTGAACGTAGGTCAATGAGCTTTTAGA-AAATCGAGGGTCGCGATC
* *
117278 TTAAATTAGTGA
64 TTAAATCAGTGG
*
117290 ACCGTAAAAATATCAATTGTGAACATAGGTCAATGA
1 ACCGTAAAAATATCAATTGTGAACGTAGGTCAATGA
117326 ATTGTTAGAA
Statistics
Matches: 315, Mismatches: 73, Indels: 34
0.75 0.17 0.08
Matches are distributed among these distances:
68 49 0.16
69 2 0.01
71 3 0.01
72 3 0.01
74 5 0.02
75 196 0.62
76 56 0.18
77 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (75 bp):
ACCGTAAAAATATCAATTGTGAACGTAGGTCAATGAGCTTTTAGAAAATCGAGGGTCGCGATCTT
AAATCAGTGG
Found at i:117044 original size:68 final size:68
Alignment explanation
Indices: 116925--117051 Score: 175
Period size: 68 Copynumber: 1.9 Consensus size: 68
116915 TAGTGGACCT
* *
116925 TAAAAATATCAGCTGTGAACGTAGGTCAACGAGCTGTAGGAATATCGAGGGTCGCGATCAACAGA
1 TAAAAATATCAGCTGTGAACGTAGGTCAACGAGCTGTAGGAAAATCAAGGGTCGCGATCAACAGA
116990 TTG
66 TTG
* * * * *
116993 TAAAAATATCAGTTGTGAACGTAGGTCAGCTAGTTGTTA-GAAAATCAAGGGTCGTGATC
1 TAAAAATATCAGCTGTGAACGTAGGTCAACGAGCTG-TAGGAAAATCAAGGGTCGCGATC
117052 TTAAATTAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
68 49 0.96
69 2 0.04
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (68 bp):
TAAAAATATCAGCTGTGAACGTAGGTCAACGAGCTGTAGGAAAATCAAGGGTCGCGATCAACAGA
TTG
Found at i:117334 original size:151 final size:150
Alignment explanation
Indices: 116848--117335 Score: 386
Period size: 143 Copynumber: 3.3 Consensus size: 150
116838 ATTAGGGAAC
* * * * * *
116848 CGTAAAAATATCAATTGTGGACGTTGGTCAATGAGCTT-TTAGAAAATCGAGGGTCACGATCTTA
1 CGTAAAAATATCAGTTGTGAACGTAGGTCAATGAG-TTGTTAGAAAATCAAGGGTCGCAATCTTA
* ** * ** * * * *
116912 AATTAGTGGACCTTAAAAATATCAGCTGTGAACGTAGGTCAACGAGCTG-TAGGAATATCGAGGG
65 AATCAGCAGACCATAAAAATATCAATTGTGAACATAGATCAACGAGCTGTTA-GAAAACCGAGGG
** *
116976 TCGCGATC---AA-CA--G-AT
129 TCATGATCTTAAATCAGCGAAA
* * **
116991 TGTAAAAATATCAGTTGTGAACGTAGGTCAGCT-AGTTGTTAGAAAATCAAGGGTCGTGATCTTA
1 CGTAAAAATATCAGTTGTGAACGTAGGTCA-ATGAGTTGTTAGAAAATCAAGGGTCGCAATCTTA
* * * * *
117055 AATTAGCAGATCATAAAAATATCAATTGTGAACGTAGATCAATGAGCTGTTAGAAAATCGAGGGT
65 AATCAGCAGACCATAAAAATATCAATTGTGAACATAGATCAACGAGCTGTTAGAAAACCGAGGGT
*
117120 CATGGTCTTAAATCAGCGAAA
130 CATGATCTTAAATCAGCGAAA
* * * ** * **
117141 CGTCAAAATATCAGTTGTGAATGCAGGTCAGCGAGTTATTAGAAAATTGAGGGTCGCAATCTTAA
1 CGTAAAAATATCAGTTGTGAACGTAGGTCAATGAGTTGTTAGAAAATCAAGGGTCGCAATCTTAA
** * * * * *
117206 ATCATTAGACCGTAGAAAATATCAATTGTGAACATAGGTCAGCGTGCTGTTA-ATAGACCGAGGG
66 ATCAGCAGACCATA-AAAATATCAATTGTGAACATAGATCAACGAGCTGTTAGA-AAACCGAGGG
** * * *
117270 TTGTGATCTTAAATTAGTGAAC
129 TCATGATCTTAAATCAGCGAAA
* * *
117292 CGTAAAAATATCAATTGTGAACATAGGTCAATGAATTGTTAGAA
1 CGTAAAAATATCAGTTGTGAACGTAGGTCAATGAGTTGTTAGAA
117336 TACCGAAGGT
Statistics
Matches: 273, Mismatches: 59, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
142 2 0.01
143 108 0.40
144 3 0.01
146 2 0.01
147 2 0.01
149 1 0.00
150 64 0.23
151 91 0.33
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (150 bp):
CGTAAAAATATCAGTTGTGAACGTAGGTCAATGAGTTGTTAGAAAATCAAGGGTCGCAATCTTAA
ATCAGCAGACCATAAAAATATCAATTGTGAACATAGATCAACGAGCTGTTAGAAAACCGAGGGTC
ATGATCTTAAATCAGCGAAA
Found at i:122900 original size:15 final size:14
Alignment explanation
Indices: 122880--122940 Score: 59
Period size: 15 Copynumber: 4.1 Consensus size: 14
122870 TAGTTAATTG
122880 TAATTAACTTTTAAT
1 TAATTAA-TTTTAAT
122895 TAATTAATGTTTAAT
1 TAATTAAT-TTTAAT
* * *
122910 TAAATAATTATGAT
1 TAATTAATTTTAAT
*
122924 TAATTAAACTTTAAT
1 TAATT-AATTTTAAT
122939 TA
1 TA
122941 CAAGTATATA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
14 9 0.24
15 28 0.76
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (14 bp):
TAATTAATTTTAAT
Found at i:125514 original size:4 final size:4
Alignment explanation
Indices: 125505--125533 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
125495 TAGTTGATCC
125505 CTTT CTTT CTTT CTTT CTTT CTTT -TTT CT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT
125534 CAAGAAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (4 bp):
CTTT
Found at i:132799 original size:18 final size:18
Alignment explanation
Indices: 132746--132827 Score: 58
Period size: 18 Copynumber: 4.6 Consensus size: 18
132736 ACACCAACCT
*
132746 AGTTGCGAGCTCACTTAA
1 AGTTGCGAGCTCACTCAA
* ** * *
132764 AGCTATGAGTTCATTCAA
1 AGTTGCGAGCTCACTCAA
132782 AGTTGCGAGCTCACTCAA
1 AGTTGCGAGCTCACTCAA
* * * *
132800 GGATGTGAGCTTA-TCAA
1 AGTTGCGAGCTCACTCAA
*
132817 AGTTACGAGCT
1 AGTTGCGAGCT
132828 TTACGTGTGA
Statistics
Matches: 45, Mismatches: 19, Indels: 1
0.69 0.29 0.02
Matches are distributed among these distances:
17 11 0.24
18 34 0.76
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (18 bp):
AGTTGCGAGCTCACTCAA
Found at i:136219 original size:16 final size:18
Alignment explanation
Indices: 136180--136221 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
136170 TAATTTTATA
136180 ATATTT-TATATTATGTT
1 ATATTTATATATTATGTT
*
136197 ATTTTTATATATTATG-T
1 ATATTTATATATTATGTT
136214 A-ATTTATA
1 ATATTTATA
136222 ACACATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 6 0.27
17 7 0.32
18 9 0.41
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
ATATTTATATATTATGTT
Found at i:136342 original size:27 final size:25
Alignment explanation
Indices: 136298--136356 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 25
136288 TAAGATGACT
*
136298 ATATAAAAATTTTCAATAAATAAAAAA
1 ATAT-AAAATTTTAAAT-AATAAAAAA
* *
136325 ATATAAAATTATTAAATATTAAAATA
1 ATATAAAATT-TTAAATAATAAAAAA
136351 ATATAA
1 ATATAA
136357 TATAAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 19 0.68
27 9 0.32
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
ATATAAAATTTTAAATAATAAAAAA
Found at i:137667 original size:24 final size:25
Alignment explanation
Indices: 137624--137671 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
137614 AAGAAGAAGT
137624 AAAGAAAGGAAAGAAAAAGGAGAAA
1 AAAGAAAGGAAAGAAAAAGGAGAAA
137649 AAAGAAA-GAAA-AAATAAGGAGAA
1 AAAGAAAGGAAAGAAA-AAGGAGAA
137672 GAATGTTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 3 0.14
24 12 0.55
25 7 0.32
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (25 bp):
AAAGAAAGGAAAGAAAAAGGAGAAA
Found at i:138385 original size:21 final size:23
Alignment explanation
Indices: 138344--138392 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
138334 GCTATGGGAG
*
138344 ATGAAGAAAAAGGAAAGGAAAGA
1 ATGAAGAAAAAAGAAAGGAAAGA
138367 ATGAA-AAAAAAGAAA-GAAAGA
1 ATGAAGAAAAAAGAAAGGAAAGA
138388 A-GAAG
1 ATGAAG
138393 GAGAAGAAGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 3 0.12
21 7 0.29
22 9 0.38
23 5 0.21
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.04
Consensus pattern (23 bp):
ATGAAGAAAAAAGAAAGGAAAGA
Found at i:145678 original size:12 final size:12
Alignment explanation
Indices: 145658--145689 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
145648 CAATTACGGG
*
145658 AGAAAAAGAATA
1 AGAAGAAGAATA
145670 AGAAGAAGAATA
1 AGAAGAAGAATA
145682 AGAAGAAG
1 AGAAGAAG
145690 GAAAGGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (12 bp):
AGAAGAAGAATA
Found at i:146410 original size:772 final size:757
Alignment explanation
Indices: 144967--148051 Score: 3097
Period size: 772 Copynumber: 4.1 Consensus size: 757
144957 AGAATGTTAA
*
144967 TTTA-TTT-TGTGTTTATTTTAATTTTAAATTTATTTTTAAAGATATTTAATTTGTTATTAGTAG
1 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTG---TTAGTAG
*
145030 TAGTAGTAATTATTTAGTTTTTAATTTTAATATTTAATGTAATTGATTTGTTATTATAATTTTAT
63 TAGTAGTAATTATTTAGTTTTTAATTTTAATATTTAATGTGATTGATTTGTTATTATAATTTTAT
* * ** * ** * * *
145095 TTGTTTAATAAGTTGATTAAAAAAAAGTTTTTTTATCAAATTAATATAAATTAATTATTTATCTA
128 TTGTTTAGTAGGTTGATT-AAAGGAGGGATTTTTACCAAATTAATACAAAATAATTATTTATCTA
* * * * * *
145160 CCAAAATGGTATCCCCA-CCATCTTAATTACAAAAATGATATGT-TTTTGGGCATGAAGGAAACT
192 CCAAAATGATATCCCCACCCA--TTAATTACCAAAATGGTATGTATTTGGGGTA-GAAGGTAA-T
* * *
145223 TAATCGATGGCACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTATTATATTTATATATT
253 TAATCGACGGCA-CAAAGGGTATTCTAACACTGATTTTTTTAATTTTTTATTATATTTATATATT
* * * *
145288 AAAAATATAAAATATAAAATAATGGTGGTGTCATCTTGAATGACGGCACAACTTTGTATACATAC
317 AAAAATA-AAAATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACAACTTTGTATACATAC
* * *
145353 AGTACAAATCAAACAAATAAATACGAAAATGAGATAAAAAATACCTAACACATGAGTGGTGCCAT
381 AGTACAAATCAAACAAATAAATACGAGAATGAGATAAAAAATACCTGACACATGGGTGGTGCCAT
* * * * *
145418 GTTAAGTCGG-GGCGCCAAAGGTGCCATTCTTA-GTGGCGGCACCGAGGGTTTTTGAGATACATG
446 GTTGAGT-GGCAGCACCAAAGGTGCCATT-TTATGTGGC-GCACCGAGGGTTTTTG-GACACGTG
* * *
145481 GCACGCCTCGAGTGGTCTTTGTGTGTGGGGGGTTTAAGAGGCAGATTCAATTGGGGATTAGGGGA
507 GCATGCCTCGAGTGG-C-TTGTGTGTGGGGGGTTTAGGAGGCAGATTCAATTGGGGGTTAGGGGA
*
145546 GAATTAAGTTGGGTGGG-TTTTTTGCTTATAAAAGAGGGAGGGAA-GACCAATGGGTTGAAAAAG
570 -AATTAAATTGGGTGGGTTTTTTTG-TTATAAAAGAGGGAGGGAAGGACCAATGGGTTGAAAAAG
* * *
145609 AAAGAT-AAAAAAATAGGATATTGTGGTTTTGTGTTTGGGCAATTACGGGAGAAAAAGAATAAGA
633 TAAGGTAAAAAAAATAGGATATTGTGGTTTTGTGTTTGGGCAACTAC-GGAGAAAAAG-A-AAGA
* *
145673 AGAAGAATAAGAAGAAGGAAAGGAAAGAAAGAAAGAAAGAAAAAAAAGAGTATAAGGTTATTTTA
695 AGAAGAATAA-AA-AAGGAAA-GAAAGAAAGAAAGAAAGAAAAAAAGGAGAATAAGGTTATTTTA
145738 T
757 T
*
145739 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTGGTAGTAG
1 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAGTAG
*
145804 TAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGATTTGTTATTATAATTTTATTTG
66 TAGTAATTATTTAGTTTTTAATTTTAATATTTAATGTGATTGATTTGTTATTATAATTTTATTTG
* *
145869 TTTAGTAGGTTGTTTAAAGGAGGGATTTTTACCAAATTAATACAAAATAATTATTTATCTATCAA
131 TTTAGTAGGTTGATTAAAGGAGGGATTTTTACCAAATTAATACAAAATAATTATTTATCTACCAA
* * * *
145934 AATGGTATCCTCATCCCATTAATTACCAAAATGGTATGT-TTTGAGGGGTAAAAGGTAATTAATT
196 AATGATATCCCCA-CCCATTAATTACCAAAATGGTATGTATTT--GGGGTAGAAGGTAATTAATC
*
145998 GACGGCACTAAGGTGTATTCTAACACTGATTTTTTTAA-TTTTTATTATA-TTATATATTAAAAA
258 GACGGCACAAAGG-GTATTCTAACACTGATTTTTTTAATTTTTTATTATATTTATATATT--AAA
* * *
146061 AATAATAAAATAATAAAATAAAGGTGGTGCCAACTTCAGTGGCGGCACAACTTTATATACATACA
320 AAT-A-AAAAT-ATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACAACTTTGTATACATACA
* * *
146126 ATACAAATCAAACAAATAAATATGAGAATGAGATAAAAAAATACCTGACACATGGGTGGTGTCAT
382 GTACAAATCAAACAAATAAATACGAGAATGAGAT-AAAAAATACCTGACACATGGGTGGTGCCAT
*
146191 GTTGAGTGGCAGCACCAAAGGTACCATTTTATGTGGCTGCACCGAGGGTTTTTAGGACACGTGGC
446 GTTGAGTGGCAGCACCAAAGGTGCCATTTTATGTGGC-GCACCGAGGGTTTTT-GGACACGTGGC
* * * * * ***
146256 ATGTCTCGAGTGGCTTATGTGTGGGGGGTTTGGGTGGCAAATTTGGTTGGGGGTTAAGGGGAAAT
509 ATGCCTCGAGTGGCTTGTGTGTGGGGGGTTTAGGAGGCAGATTCAATTGGGGGTT-AGGGGAAAT
146321 TAAATTGGGTGGGGTTTTTTTGTTATAAAAGAGGGAGGGAAGGACCAATGGGTTGAAAAAGTAAG
573 TAAATTGGGT-GGGTTTTTTTGTTATAAAAGAGGGAGGGAAGGACCAATGGGTTGAAAAAGTAAG
* * *
146386 GTAAAAAAAAT-GG-TATTTTGGTTTTCTGTTTGGGCAACTA-TGAG----AG-AAGAAGAAGAA
637 GTAAAAAAAATAGGATATTGTGGTTTTGTGTTTGGGCAACTACGGAGAAAAAGAAAGAAGAAGAA
*
146443 T--AAAAGGAAAG--A-AAAGAAAGAAAG-----AAGGAGAATAA----A-GTTAT
702 TAAAAAAGGAAAGAAAGAAAGAAAGAAAGAAAAAAAGGAGAATAAGGTTATTTTAT
146484 TTTA-TTT-TGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAGTAG
1 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAA-----T--T--T-G
*
146547 TAATAGTAGTAGTAGTAATTATTTAGTTTTTAATTTTAATATTTAATATGATTGATTTGTTATTA
56 T--TAGTAGTAGTAGTAATTATTTAGTTTTTAATTTTAATATTTAATGTGATTGATTTGTTATTA
* *
146612 TAATTTTATTTGTTTAGTAGATTGATTAAAGGA-GGATTTTTTACCAAATT-A-ACACAATAATT
119 TAATTTTATTTGTTTAGTAGGTTGATTAAAGGAGGGA-TTTTTACCAAATTAATACAAAATAATT
** * * *
146674 ATTTATCTATTAAAATAATATCCCCATCCCATTAATTACCAAAATGGTATGTCTTTGGGGT-GGA
183 ATTTATCTACCAAAATGATATCCCCA-CCCATTAATTACCAAAATGGTATGTATTTGGGGTAGAA
** * * *
146738 GGATTTTTAATCGAAGGCACAAAAGGGTATTCTGACACTAATTTTTTTAATTTTTTATTATATTT
247 GG-TAATTAATCGACGGCAC-AAAGGGTATTCTAACACTGATTTTTTTAATTTTTTATTATATTT
* * * * *
146803 ATATGTTAAAAAATAAAAATATATAAAATAATGGTGCTACCAACTTGAGTGGCAGCACCACTTTG
310 ATATATT-AAAAAT-AAAA-ATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACAACTTTG
* * * *
146868 TATAGACACAGTACAAATCAGAA-AAATAAATACGAGAATTGA-ATAAAAAATACTTGACACGTG
372 TATACATACAGTACAAATCA-AACAAATAAATACGAGAA-TGAGATAAAAAATACCTGACACATG
* * *
146931 GGTGGTGCCATGTTGAGTGGCAGCACC-TAGG-G----TTTATG-AG-ACA-C-A-------TGG
435 GGTGGTGCCATGTTGAGTGGCAGCACCAAAGGTGCCATTTTATGTGGCGCACCGAGGGTTTTTGG
* * *
146979 -CAC---G--T-CC-CGAGAGACTCATGTGTGTGGGGGGTTTGGGAGGCAGATTCAATTGGGGGT
500 ACACGTGGCATGCCTCGAGTGGCT--TGTGTGTGGGGGGTTTAGGAGGCAGATTCAATTGGGGGT
* * * *
147036 TAGGAGAAATTAAATTGGATGGGTTTTTTTGTTATAAAAGAGGGAGGGAGGGACCTATGGGTTGA
563 TAGGGGAAATTAAATTGGGTGGGTTTTTTTGTTATAAAAGAGGGAGGGAAGGACCAATGGGTTGA
* ** *
147101 AAAA-TATAGGT-AAAAAAATAAGG-TATTGTGGTTTTGTGTTTGGGTAGTTAC-G-GAAGAAGA
628 AAAAGTA-AGGTAAAAAAAAT-AGGATATTGTGGTTTTGTGTTTGGGCAACTACGGAGAAAAAGA
* **** **** * * ** *
147161 AAG-AGAA-AA-AAGAAA-GAAAGAAAG-AAG-AAG-AAGAAGGTTATTTTATTTTATTTTAAAA
691 AAGAAGAAGAATAAAAAAGGAAAGAAAGAAAGAAAGAAAGAAAAAAAGGAGA-ATAAGGTT--AT
147219 TTTAT
753 TTTAT
* *
147224 TTTATTTTGCGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAA--T-TTATTAGTAG
1 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAGTAG
* *
147286 TAGT-A--A--TA-TTTTTAATTTTAATGTTTAATGTGATTAATTTGTTATTATAATTTTATTTG
66 TAGTAATTATTTAGTTTTTAATTTTAATATTTAATGTGATTGATTTGTTATTATAATTTTATTTG
*
147345 TTTAGTAGGTTGATTAAA-GAGGGTTTTTTACCAAATTAATACAAAATAATTATTTATCTACCAA
131 TTTAGTAGGTTGATTAAAGGAGGGATTTTTACCAAATTAATACAAAATAATTATTTATCTACCAA
* * *
147409 AATGATATCCCCACCCAATTAATTACC-AAATGGTATGTATTTGGGTGTGGAGGGTACTTAATCG
196 AATGATATCCCCACCC-ATTAATTACCAAAATGGTATGTATTTGGG-GTAGAAGGTAATTAATCG
* * * *
147473 GCTGCACCAAAGGGTATTCTAATACTGATTTTTTTAATTTTTTATTATATTTATATATTAAGAAT
259 ACGGCA-CAAAGGGTATTCTAACACTGATTTTTTTAATTTTTTATTATATTTATATATTAAAAAT
* * * * * * *
147538 AAAAAATATAAAATAATGGTAGTGTCAACTTAAGTGGCGGCACCACTTTGCATTCATATAGTACA
323 -AAAAATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACAACTTTGTATACATACAGTACA
* * *
147603 AATCAGACAAATAAATACGAGAATAAGATAAAAAAAATACCTGACACACGGGTGGTGCCATGTTG
387 AATCAAACAAATAAATACGAGAATGAGAT--AAAAAATACCTGACACATGGGTGGTGCCATGTTG
** ** * * * * ** *
147668 AGTGGTGGTGCCAGAGGTGTCATTCTAAGTGGCAGCACCGAGGGTATTCGGGACAC-TTGCATGC
450 AGTGGCAGCACCAAAGGTGCCATTTTATGTGGC-GCACCGAGGGT-TTTTGGACACGTGGCATGC
* * * *** * ** * * *
147732 CTCGAGTAGCCCGTGTGTATAAAGGGTCTAGGAGGCAGATTTGATTAGGGGTTAAGGAAAATTAA
513 CTCGAGT-G-GCTTGTGTGTGGGGGGTTTAGGAGGCAGATTCAATTGGGGGTTAGGGGAAATTAA
* * * ** *
147797 TTTGGGTGGATTTTTTAGTTATAAAAGAGGGAGTGG-AGGATTAGTGGGTTGAAAAAG-AATGGT
576 ATTGGGTGGGTTTTTTTGTTATAAAAGAGGGAG-GGAAGGACCAATGGGTTGAAAAAGTAA-GGT
*
147860 AAAAAAAAATAGGATATTGTGGTTTTGTGTTTGGGCAGCTACGGGAGAAAAAG-AAGAAGGAAAG
639 -AAAAAAAATAGGATATTGTGGTTTTGTGTTTGGGCAACTAC-GGAGAAAAAGAAAGAA-G-AAG
* * *
147924 AATGAAAGAAA-GAAAGAAGGAGAAA-AATGAAAGAAAGAAGAAGGAAAAGAAGGTTATTTTAT
700 AAT-AAA-AAAGGAAAGAA--AGAAAGAAAGAAAGAAA-AA-AAGGAGAATAAGGTTATTTTAT
* * *
147986 TTTATTTTGTGTGTTTATTTTAATTTTAAAGTTATTTTTAAAGTTATTTATTTTGCTAGTAGTAG
1 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAGTAG
148051 T
66 T
148052 TGTACAAGTC
Statistics
Matches: 1944, Mismatches: 232, Indels: 281
0.79 0.09 0.11
Matches are distributed among these distances:
719 3 0.00
720 86 0.04
721 98 0.05
722 144 0.07
723 17 0.01
724 61 0.03
725 43 0.02
726 36 0.02
727 22 0.01
728 17 0.01
729 9 0.00
731 6 0.00
732 5 0.00
733 4 0.00
739 1 0.00
740 9 0.00
741 6 0.00
742 46 0.02
743 42 0.02
744 5 0.00
745 14 0.01
746 2 0.00
747 3 0.00
748 93 0.05
749 6 0.00
750 48 0.02
751 46 0.02
752 117 0.06
753 98 0.05
754 16 0.01
755 117 0.06
756 3 0.00
758 3 0.00
759 17 0.01
760 2 0.00
761 2 0.00
762 58 0.03
763 17 0.01
764 4 0.00
765 11 0.01
766 2 0.00
768 9 0.00
769 15 0.01
770 118 0.06
771 141 0.07
772 146 0.08
773 122 0.06
774 54 0.03
ACGTcount: A:0.35, C:0.08, G:0.21, T:0.35
Consensus pattern (757 bp):
TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAGTAG
TAGTAATTATTTAGTTTTTAATTTTAATATTTAATGTGATTGATTTGTTATTATAATTTTATTTG
TTTAGTAGGTTGATTAAAGGAGGGATTTTTACCAAATTAATACAAAATAATTATTTATCTACCAA
AATGATATCCCCACCCATTAATTACCAAAATGGTATGTATTTGGGGTAGAAGGTAATTAATCGAC
GGCACAAAGGGTATTCTAACACTGATTTTTTTAATTTTTTATTATATTTATATATTAAAAATAAA
AATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACAACTTTGTATACATACAGTACAAATC
AAACAAATAAATACGAGAATGAGATAAAAAATACCTGACACATGGGTGGTGCCATGTTGAGTGGC
AGCACCAAAGGTGCCATTTTATGTGGCGCACCGAGGGTTTTTGGACACGTGGCATGCCTCGAGTG
GCTTGTGTGTGGGGGGTTTAGGAGGCAGATTCAATTGGGGGTTAGGGGAAATTAAATTGGGTGGG
TTTTTTTGTTATAAAAGAGGGAGGGAAGGACCAATGGGTTGAAAAAGTAAGGTAAAAAAAATAGG
ATATTGTGGTTTTGTGTTTGGGCAACTACGGAGAAAAAGAAAGAAGAAGAATAAAAAAGGAAAGA
AAGAAAGAAAGAAAGAAAAAAAGGAGAATAAGGTTATTTTAT
Found at i:147930 original size:8 final size:8
Alignment explanation
Indices: 147913--147976 Score: 58
Period size: 8 Copynumber: 7.9 Consensus size: 8
147903 GGAGAAAAAG
147913 AAGAAGGA
1 AAGAAGGA
*
147921 AAGAATGA
1 AAGAAGGA
*
147929 AAGAAAGA
1 AAGAAGGA
147937 AAGAAGGA
1 AAGAAGGA
* *
147945 GAAAAATGA
1 -AAGAAGGA
*
147954 AAGAAAG-
1 AAGAAGGA
147961 AAGAAGGAA
1 AAGAAGG-A
147970 AAGAAGG
1 AAGAAGG
147977 TTATTTTATT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
7 6 0.13
8 26 0.58
9 13 0.29
ACGTcount: A:0.66, C:0.00, G:0.31, T:0.03
Consensus pattern (8 bp):
AAGAAGGA
Found at i:148026 original size:12 final size:12
Alignment explanation
Indices: 148009--148034 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
147999 TTTATTTTAA
148009 TTTTAAAGTTAT
1 TTTTAAAGTTAT
148021 TTTTAAAGTTAT
1 TTTTAAAGTTAT
148033 TT
1 TT
148035 ATTTTGCTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (12 bp):
TTTTAAAGTTAT
Found at i:149452 original size:9 final size:9
Alignment explanation
Indices: 149438--149472 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
149428 TTTTAATATG
149438 TTTTTTAAT
1 TTTTTTAAT
*
149447 TTTTTTAAA
1 TTTTTTAAT
*
149456 TCTTTTAAT
1 TTTTTTAAT
149465 TTTTTTAA
1 TTTTTTAA
149473 AATTTGATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:149530 original size:2 final size:2
Alignment explanation
Indices: 149523--149579 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
149513 TTTCATTTTC
149523 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
149565 TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA T
149580 TAGTATTATT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:149854 original size:15 final size:15
Alignment explanation
Indices: 149834--149863 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
149824 ATCGTATTTA
149834 TTTTATTTATGCATG
1 TTTTATTTATGCATG
*
149849 TTTTATTTTTGCATG
1 TTTTATTTATGCATG
149864 ACATTTTAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.13, T:0.63
Consensus pattern (15 bp):
TTTTATTTATGCATG
Found at i:162331 original size:158 final size:158
Alignment explanation
Indices: 162035--162364 Score: 396
Period size: 158 Copynumber: 2.1 Consensus size: 158
162025 TGTTACAGTT
* * *
162035 ACAGCTCGTGTGAGCATTACAGGTTATATGGGTTCTGGTCTTAGATGTCCTACCGATGGTTGAGG
1 ACAGCTCGTGTGAGAATTACAGGTTATATGGGTTCTGGTCTTAGATGTCCTACCGATGGCTGAGA
* * * * *
162100 TCCTGCATTGGTTGCGGATTCTCCACAACTCGTGTGAGCAACATCGCGTAGCCTAACATCTCGAC
66 TCCTGCATTGATTGCGAATTCTCCACAACTCATGTGAGCAACATCGCATAGCCCAACATCTCGAC
* *
162165 CAACAGCTCGTGTGAGCA-AGCCTATTTC
131 CAACAGCTCATGTGAGCAGA-CCCATTTC
* * * *
162193 ACATCTCGTGTGAGAATTACAGGTTATATGGGTGT-TGTTCTTAGATGTCTTATCGATGGCTGAG
1 ACAGCTCGTGTGAGAATTACAGGTTATATGGGT-TCTGGTCTTAGATGTCCTACCGATGGCTGAG
* * * * * * * *
162257 AT-CTGACATTTATTGTGAATTCTCCATAGCTCATGTGAGCAGCATTGTATAGCCCCACATCTCG
65 ATCCTG-CATTGATTGCGAATTCTCCACAACTCATGTGAGCAACATCGCATAGCCCAACATCTCG
* *
162321 ACCCAGAGCTCATGTGAGCAGACCCATTTC
129 ACCAACAGCTCATGTGAGCAGACCCATTTC
162351 ACAGCTCGTGTGAG
1 ACAGCTCGTGTGAG
162365 CATATATGAT
Statistics
Matches: 144, Mismatches: 25, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
157 3 0.02
158 139 0.97
159 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (158 bp):
ACAGCTCGTGTGAGAATTACAGGTTATATGGGTTCTGGTCTTAGATGTCCTACCGATGGCTGAGA
TCCTGCATTGATTGCGAATTCTCCACAACTCATGTGAGCAACATCGCATAGCCCAACATCTCGAC
CAACAGCTCATGTGAGCAGACCCATTTC
Found at i:165082 original size:7 final size:7
Alignment explanation
Indices: 165070--165095 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
165060 TCATCCCATT
165070 TTCTTTC
1 TTCTTTC
165077 TTCTTTC
1 TTCTTTC
165084 TTCTTTC
1 TTCTTTC
165091 TTCTT
1 TTCTT
165096 CACACAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (7 bp):
TTCTTTC
Found at i:165851 original size:43 final size:42
Alignment explanation
Indices: 165771--166004 Score: 233
Period size: 41 Copynumber: 5.6 Consensus size: 42
165761 ATACTTGGTG
* * * * * **
165771 TGTAAAAAGGAAGACTCGTGTCTCGGGTTGAGCATGAGAAAT
1 TGTATAAAGGAAGACTCATGTCTCGAGATGAGAATGAGATTT
165813 TGTATAAATGGAAGACTCATGTCTCGAGATGAGAATGAGATTT
1 TGTATAAA-GGAAGACTCATGTCTCGAGATGAGAATGAGATTT
* *
165856 TGAAT-AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTT
1 TGTATAAAGGAAGACTCATGTCTCGAGATGAGAATGAGATTT
* * * *
165897 TGAAT-AAGGAAGACTCATGTCTCAAAAAGAGAATGAGATTT
1 TGTATAAAGGAAGACTCATGTCTCGAGATGAGAATGAGATTT
* * * * *
165938 TG-ATTAAGGAAGACTCATATCTCTAGTTGAGAATGAGAATAT
1 TGTATAAAGGAAGACTCATGTCTCGAGATGAGAATGAG-ATTT
* * *
165980 GGT-TAAAGGAAGACTTATGACTCGA
1 TGTATAAAGGAAGACTCATGTCTCGA
166005 AAGAGCATAA
Statistics
Matches: 165, Mismatches: 23, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
40 2 0.01
41 101 0.61
42 30 0.18
43 32 0.19
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTATAAAGGAAGACTCATGTCTCGAGATGAGAATGAGATTT
Found at i:165875 original size:41 final size:41
Alignment explanation
Indices: 165777--165975 Score: 245
Period size: 41 Copynumber: 4.8 Consensus size: 41
165767 GGTGTGTAAA
* * * * ** *
165777 AAGGAAGACTCGTGTCTCGGGTTGAGCATGAGAAATTGTAT
1 AAGGAAGACTCATGTCTCGAGATGAGAATGAGATTTTGAAT
165818 AAATGGAAGACTCATGTCTCGAGATGAGAATGAGATTTTGAAT
1 -AA-GGAAGACTCATGTCTCGAGATGAGAATGAGATTTTGAAT
*
165861 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGAAT
1 AAGGAAGACTCATGTCTCGAGATGAGAATGAGATTTTGAAT
* * * *
165902 AAGGAAGACTCATGTCTCAAAAAGAGAATGAGATTTTGATT
1 AAGGAAGACTCATGTCTCGAGATGAGAATGAGATTTTGAAT
* * *
165943 AAGGAAGACTCATATCTCTAGTTGAGAATGAGA
1 AAGGAAGACTCATGTCTCGAGATGAGAATGAGA
165976 ATATGGTTAA
Statistics
Matches: 140, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
41 104 0.74
42 4 0.03
43 32 0.23
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.27
Consensus pattern (41 bp):
AAGGAAGACTCATGTCTCGAGATGAGAATGAGATTTTGAAT
Found at i:166008 original size:82 final size:82
Alignment explanation
Indices: 165777--166009 Score: 263
Period size: 82 Copynumber: 2.8 Consensus size: 82
165767 GGTGTGTAAA
* * * *
165777 AAGGAAGACTCGTGTCTCGGGTTGAGCATGAGAA-ATTGTATAAATGGAAGACTCATGTCTCGAG
1 AAGGAAGACTCATGTCTCGAGTTGAGAATGAGAATATGGT-TAAA-GGAAGACTCATGTCTCGA-
*
165841 ATGAGAATGAGATTTTGAAT
63 AAGAGAATGAGATTTTGAAT
** * * ** *
165861 AAGGAAGACTCATGTCTCGAAATGAGAATGAGATTTTGAAT-AAGGAAGACTCATGTCTCAAAAA
1 AAGGAAGACTCATGTCTCGAGTTGAGAATGAGAATATGGTTAAAGGAAGACTCATGTCTC-GAAA
*
165925 GAGAATGAGATTTTGATT
65 GAGAATGAGATTTTGAAT
* * * *
165943 AAGGAAGACTCATATCTCTAGTTGAGAATGAGAATATGGTTAAAGGAAGACTTATGACTCGAAAG
1 AAGGAAGACTCATGTCTCGAGTTGAGAATGAGAATATGGTTAAAGGAAGACTCATGTCTCGAAAG
166008 AG
66 AG
166010 CATAAGGTTG
Statistics
Matches: 122, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
82 73 0.60
83 19 0.16
84 29 0.24
85 1 0.01
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.26
Consensus pattern (82 bp):
AAGGAAGACTCATGTCTCGAGTTGAGAATGAGAATATGGTTAAAGGAAGACTCATGTCTCGAAAG
AGAATGAGATTTTGAAT
Found at i:169509 original size:82 final size:82
Alignment explanation
Indices: 169372--169535 Score: 301
Period size: 82 Copynumber: 2.0 Consensus size: 82
169362 CATATTAGGT
*
169372 TTTGTTTATTTACCATTTAACCTTTTTAACTAATAAATTTTCCCTTAATAATTCCAAACCATTAC
1 TTTGTTTATTTACCATTTAACCCTTTTAACTAATAAATTTTCCCTTAATAATTCCAAACCATTAC
*
169437 TGTCCAACCCACTTTAC
66 CGTCCAACCCACTTTAC
*
169454 TTTGTTTATTTACCATTTTACCCTTTTAACTAATAAATTTTCCCTTAATAATTCCAAACCATTAC
1 TTTGTTTATTTACCATTTAACCCTTTTAACTAATAAATTTTCCCTTAATAATTCCAAACCATTAC
169519 CGTCCAACCCACTTTAC
66 CGTCCAACCCACTTTAC
169536 AAGGTAGAAT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 79 1.00
ACGTcount: A:0.30, C:0.26, G:0.02, T:0.42
Consensus pattern (82 bp):
TTTGTTTATTTACCATTTAACCCTTTTAACTAATAAATTTTCCCTTAATAATTCCAAACCATTAC
CGTCCAACCCACTTTAC
Found at i:170525 original size:21 final size:21
Alignment explanation
Indices: 170496--170537 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
170486 TTAGCGATTC
* *
170496 TTGATCAACGTTTGCTATTTT
1 TTGACCAACATTTGCTATTTT
170517 TTGACCAACATTTGCTATTTT
1 TTGACCAACATTTGCTATTTT
170538 GACTAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.17, G:0.12, T:0.50
Consensus pattern (21 bp):
TTGACCAACATTTGCTATTTT
Found at i:173195 original size:9 final size:9
Alignment explanation
Indices: 173181--173215 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
173171 TTTTAATATG
173181 TTTTTTAAT
1 TTTTTTAAT
*
173190 TTTTTTAAA
1 TTTTTTAAT
*
173199 TCTTTTAAT
1 TTTTTTAAT
173208 TTTTTTAA
1 TTTTTTAA
173216 AATTTGATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTTTAAT
Found at i:173530 original size:11 final size:11
Alignment explanation
Indices: 173510--173544 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
173500 TATTGCCATG
*
173510 ATTATATTATT
1 ATTATGTTATT
173521 ATTATGTTATT
1 ATTATGTTATT
173532 ATT-TGTTATT
1 ATTATGTTATT
173542 ATT
1 ATT
173545 TATTTTATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 10 0.43
11 13 0.57
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (11 bp):
ATTATGTTATT
Found at i:173540 original size:10 final size:10
Alignment explanation
Indices: 173516--173554 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
173506 CATGATTATA
173516 TTATTATTATG
1 TTATTATT-TG
173527 TTATTATTTG
1 TTATTATTTG
*
173537 TTATTATTTA
1 TTATTATTTG
173547 TT-TTATTT
1 TTATTATTT
173555 ATGCATGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
9 6 0.22
10 13 0.48
11 8 0.30
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (10 bp):
TTATTATTTG
Found at i:177323 original size:17 final size:16
Alignment explanation
Indices: 177301--177360 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 16
177291 AGAATGTTAG
177301 TTTATTTTATTTTAAAA
1 TTTATTTTATTTT-AAA
**
177318 TTTATTTTATATTGTATG
1 TTTATTTTAT-TT-TAAA
177336 TTTATTTTAATTTTAAA
1 TTTATTTT-ATTTTAAA
177353 TTTATTTT
1 TTTATTTT
177361 TAGAGTTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
17 20 0.56
18 13 0.36
19 3 0.08
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.68
Consensus pattern (16 bp):
TTTATTTTATTTTAAA
Found at i:178476 original size:779 final size:764
Alignment explanation
Indices: 175846--180508 Score: 4977
Period size: 779 Copynumber: 6.1 Consensus size: 764
175836 ATGGTTTCGA
* * * *
175846 TAGTAGTAATTATTTAGTTTTAAATTTTTATGTTTAATGTAATTGATTTGTTATTATTATTTTAT
1 TAGTAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGATTTGTTATTATAATTTTAT
* *
175911 TTGTTTAGTAGGTTAATTAAAGGAGGGTTTTTTACCAAATTAATACAAAATAATTATTTATCTAC
66 TTGTTTAGTAGGTTGATTAAAGGAGAGTTTTTTACCAAATTAATACAAAATAATTATTTATCTAC
* * * * *
175976 CAAAATGGTATCCCCACCCCATTAATTACCAAAATGGTATGTTTTTAGG-ATGGAGGGTATTTAA
131 CAAAATGATATCTCCACCCCATTAATTACCAAAATGGTATGTTTTTGGGTGTGGAGGGTACTTAA
* * * * *
176040 TCGACGACACGAAGGGGTATTCTGGCACTGATTTTTTAAATTTTTTATTATATTTATATATTAAA
196 TCGGCGGCACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTATTATATTTATATATTAAA
* * * *
176105 AATATAAAAATATAAAATAATGCTGGTGCCAACTTGAGTGGCTGCACCACTTTGTATACTTACAG
261 AATA-AAAAATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACCACTTTGCATACATACAG
* * * * * *
176170 TACAAATCAGACAAATAAATACGAGAATGGGAT-TAAAGAATACCTAACACATGGGTGGTGCCAC
325 TACAAATCAAACAAATAAATACGAGAATGGGATAAAAAAAATACCTGACACATGGGTGGTGTCAT
* * *
176234 GTTGAGTGCCGAGCACCAAAGGTG-CAATTCTAAGTGGAGGCACCGAGGGTTTTTAGGACACGTG
390 GTTGAGTGGC-AGCACCAAAGGTGTC-ATTCTAAGTGG-CGCACCGAGGGTTTTTGGGACACGTG
176298 GCACGCCCCGAGTGGCCCGTGTGTGT-GGGGGGTTTGGGAGGT-AGATTCGGTTGGGGGTTAGGG
452 GCACGCCCCGAGTGGCCCGTGTGTGTGGGGGGGTTTGGGA-GTCAGATTCGGTTGGGGGTTAGGG
* *
176361 GAAAATTAAATTGGGTGGATTTTTTTTTGTTATAAAAGA-GGATGGGAGACCAATGGGTTGAAAA
516 GGAAATTAAATTGGGTGGA--TTTTTTTGTTATAAAAGAGGGA-GGGGGACCAATGGGTTGAAAA
* * *
176425 AGAAAGGTAAAAAAGAAAAGAGTATTGTGGTTTTGTGTTTGGGTAGCTACGGG--AGAAGAAGAA
578 AGAAAGGTAAAAAA-ATATGAGTATTGTGGTTTTGTGTTTGGGCAGCTACGGGAAAGAAGAAGAA
* * * * *
176488 GAAGGAAAGGAAACAAACAAAG-A-AAGA-AAGAAAG-AAAGAAGAAGGAGAAGCTTATTTTATT
642 AAAGGAAAGGAAA-AAAGAAAGAAGAAGAGAAAAAAGAAAAGAAGAAGAAGAAG--AATTTTATT
*
176549 TTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTA-TTAATTTGTTGGTAG
704 TTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAG
* * *
176609 TAGTAATAATTATTTAATTTTTAATTTTAATGTTTAATGTGATTGATTTTTTATTATAATTTTAT
1 TAGTAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGATTTGTTATTATAATTTTAT
* * * *
176674 TTGTTTAGTAGGTTGATTAAAGAAGAGTTTTTTTATCAAATTAATACAAATTGATTATTTATCTA
66 TTGTTTAGTAGGTTGATTAAAGGAGAG-TTTTTTACCAAATTAATACAAAATAATTATTTATCTA
* * * ** ** * * *
176739 CTAAAATGATATCTTCACCCTATTAATTATAAAAATTTTATGTTTTTGGGGCGTAGAGAGTACTT
130 CCAAAATGATATCTCCACCCCATTAATTACCAAAATGGTATGTTTTT-GGGTGTGGAGGGTACTT
* * *
176804 AATCGGCGGCATCAAGGGGTATTCTCACATTGATTTTTTCTTTTAATTTTTTATTATATTTATAT
194 AATCGGCGGCACCAAGGGGTATTCTGACACTGA---TTT-TTTTAATTTTTTATTATATTTATAT
* *
176869 ATTAAAAAATAAAAAAATATAAAATAATAGTGGTGCCAACTTGAGTGAG-GGCACCACTTTGTAT
255 ATT-AAAAAT-AAAAAATATAAAATAATGGTGGTGCCAACTTGAGTG-GCGGCACCACTTTGCAT
* * *
176933 ACATACAGTACAAATCAGATAAATAAAT--GAGAATGGGATAAAAAAAAAATACTTGACACATGG
317 ACATACAGTACAAATCAAACAAATAAATACGAGAATGGGAT--AAAAAAAATACCTGACACATGG
* * *
176996 GTGGTG-CATTGTTGAGTGGCGGCACCAAAGGTGTCATTCTAAGTGGCGACACCGAGAGTTTTTT
380 GTGGTGTCA-TGTTGAGTGGCAGCACCAAAGGTGTCATTCTAAGTGGCG-CACCGAGGGTTTTTG
* * * ** * *
177060 GGACACGTGGTACGCCCCAATTGGCCC--GTGTGT-GGGGGGTTTTTGAGTCAGATTTGGTTGGA
443 GGACACGTGGCACGCCCCGAGTGGCCCGTGTGTGTGGGGGGGTTTGGGAGTCAGATTCGGTTGGG
* * * * *
177122 GGTTAGGGGAAAATTAAATTGGGTGGTTTTTTTTGTTATAAAAGAGGGAAGGGGACAAATGAGTT
508 GGTTAGGGGGAAATTAAATTGGGTGGATTTTTTTGTTATAAAAGAGGGAGGGGGACCAATGGGTT
* * * * * **
177187 GAAAAAGAAAGGTAAAAAAA-ATAAGATATTCTGATTTTGTGTTTGGGTAGTTACAAGAGAAGAA
573 GAAAAAGAAAGGTAAAAAAATATGAG-TATTGTGGTTTTGTGTTTGGGCAGCTACGGGA-AAGAA
* * * ** *** ****
177251 GAAGAAGGAAAGGAAA-CAAACAAAGAAAGAAAGAAGGAGAAGAATG-TTAGTTTATTTTATTTT
636 GAAGAA--AAAGGAAAGGAAA-AAAGAAAG-AAGAA-GAGAAAAAAGAAAAG---A-AGAAGAAG
* * *
177314 AA-AA-TTTATTTTATATTGTATGTTTATTTTAATTTTAAATTTATTTTTAGAGTTATTTAATTT
692 AAGAATTTTATTTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTT
** *
177377 -TTTTTTG
757 GTTAGTAG
* * * *
177384 TAGTAGTAATTATTTAGTTTTTAATTTTAATATTTAATATAATTGATTTATTATTATAATTTTAT
1 TAGTAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGATTTGTTATTATAATTTTAT
* * * * *
177449 TTTTTTATTAGGTTGATTTAAGGAGAGTTTTTTACCAAATTAATTCAAAATAATTATTTATATAC
66 TTGTTTAGTAGGTTGATTAAAGGAGAGTTTTTTACCAAATTAATACAAAATAATTATTTATCTAC
* ** * * * *
177514 CAAAATGGTATCTCTGCCCCAATAATTATCAAAATGATATGTTTTTTGGTGTGGAGGGTACTTAA
131 CAAAATGATATCTCCACCCCATTAATTACCAAAATGGTATGTTTTTGGGTGTGGAGGGTACTTAA
*
177579 TCGGCGGCATCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTAATTATATTTATATATTAA
196 TCGGCGGCACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTT-ATTATATTTATATATT-A
* * * *
177644 AAAATTAAAAAATATAAAATAATGGTGGTGCCAACTTGAGTGACAGTACCACTTTGCATGCATAC
259 AAAA-TAAAAAATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACCACTTTGCATACATAC
** *
177709 AGTACAAATCAAACAAATAAATACGAGAATTAGATAAAAAAAATACCTAACACATGGGTGGTGTC
323 AGTACAAATCAAACAAATAAATACGAGAATGGGATAAAAAAAATACCTGACACATGGGTGGTGTC
* * * * * * *
177774 ATGTTGAGTGGCAGCATCAAAGGTGCCATTCTAAGT-GCATGTACCAAGGGTATTGGGGACATGT
388 ATGTTGAGTGGCAGCACCAAAGGTGTCATTCTAAGTGGC--GCACCGAGGGTTTTTGGGACACGT
* ** *
177838 GGCATGCCTTGAGTGGCCCGTGTGTGTGGGGGGGTTTGTGAGTCAGATTCGGTTGGGGGTTAGGG
451 GGCACGCCCCGAGTGGCCCGTGTGTGTGGGGGGGTTTGGGAGTCAGATTCGGTTGGGGGTTAGGG
* * * *
177903 GGAAATTAAATTGGATGGATTTTTTGGTTATAAATGAGGGAGGGGGACCAATAGGTTGAAAAAGA
516 GGAAATTAAATTGGGTGGATTTTTTTGTTATAAAAGAGGGAGGGGGACCAATGGGTTGAAAAAGA
* * *
177968 ATGGTAAAAAAATATG-GTATTTTGGTTTTTGTGTTTGGGCAGTTACGGGAAAAGAAGAAGAAAA
581 AAGGTAAAAAAATATGAGTATTGTGG-TTTTGTGTTTGGGCAGCTACGGG-AAAGAAGAAGAAAA
* **
178032 AGGAAAGGAAATAAAGAAAGAAGAAGGAGAAAAAAGAAATAAAGGAAGAAGCAGAAGAAGGTTAT
644 AGGAAAGGAAA-AAAGAAAGAAGAA-GAGAAAAAAG--A-AAA-GAAGAAGAAGAAGAATTTTAT
*
178097 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAC
703 TTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAG
* * * *
178159 TTGTTGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGAGTGATTTTTTTATTATAATTTTA
1 TAGTAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGA-TTTGTTATTATAATTTTA
* * *
178224 TTTGTTTAGTAGGTTGATTAAAGAAGAATTTCATTTACCAAATTAATACAAAATAATTATTTATA
65 TTTGTTTAGTAGGTTGATTAAAGGAGAGTTT--TTTACCAAATTAATACAAAATAATTATTTATC
* *
178289 TACCAAAATGATAT-TCCCACCCAATTAAATTACCAAAATGGTATGTTTTTGGGTGTTGAGGGTA
128 TACCAAAATGATATCT-CCACCCCATT-AATTACCAAAATGGTATGTTTTTGGGTGTGGAGGGTA
* * * *
178353 CTTAATTGTCAGTACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTATTATATTTATATA
191 CTTAATCGGCGGCACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTATTATATTTATATA
* *
178418 TTAAAAAATAAAAAATATTTAAAATAATGGTGGTGCCAACTTGAGTGGTGGAACCACTTT-CTAT
256 TT-AAAAATAAAAAATA--TAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACCACTTTGC-AT
* * * **
178482 CCATACAGTACAAATCAGACAAATAAATACGAGAATGAGATAAAAAAAATACCTGACACATGTAT
317 ACATACAGTACAAATCAAACAAATAAATACGAGAATGGGATAAAAAAAATACCTGACACATGGGT
* *
178547 GGTGTCATGTTGAGTGGCAGCACCAAAGGTGTCATTCTAAGTGGCGGCATCGAAGGG-TTTGGGG
382 GGTGTCATGTTGAGTGGCAGCACCAAAGGTGTCATTCTAAGTGGC-GCACCG-AGGGTTTTTGGG
* ** * ** * **
178611 ACACCTGGCATACCCCGAGTGGTCTATGTGTGGGAGGGAGGGTTTGGGAGGT-AGATTTTTGTT-
445 ACACGTGGCACGCCCCGAGTGGCCCGTGTGTGTG-GGG-GGGTTTGGGA-GTCAGA-TTCGGTTG
* * *
178674 GGGGTTA-GGGGAAATTAAATTGGGTAG-TTTTTTTGTTATAAAAGAGAGAGGGGGACTAATGGG
506 GGGGTTAGGGGGAAATTAAATTGGGTGGATTTTTTTGTTATAAAAGAGGGAGGGGGACCAATGGG
* *
178737 TTGAAAAAGAAAGGAAAAAAAAAATAGAGTATTGTGGTTTTGTGTTTGGGCAGCTA-GTGG--AG
571 TTGAAAAAGAAAGGTAAAAAAATAT-GAGTATTGTGGTTTTGTGTTTGGGCAGCTACG-GGAAAG
* *
178799 AAGAAG---AA-G-AAGG--AAAAGAAAG-A-AAGA-AAAAAAG--AAGAAGGAGAATAAG-A--
634 AAGAAGAAAAAGGAAAGGAAAAAAGAAAGAAGAAGAGAAAAAAGAAAAGAAGAAGAAGAAGAATT
* * * * *
178849 TTATTTTATTTTAT-T-TTAAAATTT-ATTTT--ACTTA-TTTTAAATTTATTTAATTTGTTAGT
699 TTATTTTATTTTGTGTGTT-TATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTG-T--T
178908 AGTAG
760 AGTAG
*
178913 TAGTAGTAATTATTTAGTTTTTAATTTTAAT-TTTAATGTGATTGATTTGTTATTTTAATTTTAT
1 TAGTAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGATTTGTTATTATAATTTTAT
* * *
178977 TTGTTTAGTAGGTT-ATTTAAAGGAGGGTTTTTTACTAAATTAATACAAACTAATTATTTATCTA
66 TTGTTTAGTAGGTTGA-TTAAAGGAGAGTTTTTTACCAAATTAATACAAAATAATTATTTATCTA
* * * * *
179041 CTAAAATGATATCTCCACCCCATTAGTTACTAAAATGATATGTTTTTGGAG-GTGGAGGGCACTT
130 CCAAAATGATATCTCCACCCCATTAATTACCAAAATGGTATGTTTTTGG-GTGTGGAGGGTACTT
* * * *
179105 AATTGACGACACCAAAGGGTATTCTGACA-TGATTTTTTTAATTTTTTATTATATTTATATATTA
194 AATCGGCGGCACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTATTATATTTATATATTA
* * * *
179169 AAAATATAAAATATAAAATAATAGTGGTGCCAACTTGAGTGGCAGCACCACTTTGTATACATACA
259 AAAATAAAAAATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACCACTTTGCATACATAC-
* * * *
179234 AATACAAATCAAACAAATAAATACAAGAAT--GAGAAAAAAAATACTTGACACATGGGTGGTGTC
323 AGTACAAATCAAACAAATAAATACGAGAATGGGATAAAAAAAATACCTGACACATGGGTGGTGTC
*
179297 ATG-T---T----G------A-GTG----TC------G-ACACCGAGGGTTTTTGGGACACGTGG
388 ATGTTGAGTGGCAGCACCAAAGGTGTCATTCTAAGTGGCGCACCGAGGGTTTTTGGGACACGTGG
* * * * * * * * * *
179336 CATGCCCC-ACGTGGCCCGTATGTATGGAGGGGTTGGGGAGGCAGATTCGATTTGGGGTTAGAGA
453 CACGCCCCGA-GTGGCCCGTGTGTGTGGGGGGGTTTGGGAGTCAGATTCGGTTGGGGGTTAGGGG
* * *
179400 GAAATTAAATTGGGTGGGTTTTTTGGTTATAAAAGAGAGAGGGGAGACCAATGGGTTGAAAAAGA
517 GAAATTAAATTGGGTGGATTTTTTTGTTATAAAAGAGGGAGGGG-GACCAATGGGTTGAAAAAGA
* * * *
179465 AATGTAAAAAAA-ATAGAGTATTTTGGTTTTGTGTTTGGGAAGCTACGGGAGAAGAAGAAGAAGA
581 AAGGTAAAAAAATAT-GAGTATTGTGGTTTTGTGTTTGGGCAGCTACGGGA-AAGAAGAAGAAAA
*
179529 AGGAAAGGAAAGAAAGAAAGAAAGAAGAAGGAGAAAAAAGAAATAAGGAAGAAGAAGAAGGTTAT
644 AGGAAA-G---GAAA-AAAGAAAGAAGAA-GAGAAAAAAG-AA-AA-GAAGAAGAAGAA-G-AAT
* *
179594 TTTATTTTATTTTGTTTGTTTATTTTAATTTTAAATTTATTTTTAAA-ATATTTAATTTG-T--T
698 TTTATTTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGT
179655 AG
763 AG
* * *
179657 TAGTAGTAATTATTTAGTTTTTAATTTTAATGGTTAATATGATTGATTTATTATTATAATTTTAT
1 TAGTAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGATTTGTTATTATAATTTTAT
179722 TTGTTTAGTA-GTTGATTAAAGGAG-GTTTTTTTTTACCAAATTAATAC-AAATAATTATTTATC
66 TTGTTTAGTAGGTTGATTAAAGGAGAG---TTTTTTACCAAATTAATACAAAATAATTATTTATC
* * * *
179784 TACCAAAAT-AGTATC-CTCACCCCATTAATTACTATAATGGTATGTTTTGGGGGGTGGAGGGTA
128 TACCAAAATGA-TATCTC-CACCCCATTAATTACCAAAATGGTATGTTTTTGGGTGTGGAGGGTA
* * * * * *
179847 CTTAATCGGCGGCACCAAAGGATATTTTGACATTAATTTTTTTAATTTTTTATTATATATTA-AA
191 CTTAATCGGCGGCACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTATTATAT-TTATAT
* * * * * * *
179911 AATAAAAAT---ATATATAAAATAATGGTGGTGCCAACTTGATTGGCGGGACTA-TTTTCTATAA
255 ATTAAAAATAAAAAATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACCACTTTGC-ATAC
*
179972 ATACAGTACAAATCAAACAAATAAATACGAGAATGGGAT--AAAAAATACCTGACAAATGGGTGG
319 ATACAGTACAAATCAAACAAATAAATACGAGAATGGGATAAAAAAAATACCTGACACATGGGTGG
* * * * * *
180035 TGCCATGTTAAGTAGTAGCACCGAAGGTGTCATTCTAAGTGGCGCCATCGAGGGTTTTTGGGACA
384 TGTCATGTTGAGTGGCAGCACCAAAGGTGTCATTCTAAGTGGCG-CACCGAGGGTTTTTGGGACA
* ** *** * * *
180100 CATGGCACATCTTAACTGGCCCGTGTGTTTGTGTGTGGGGGTTTGGGAGGCATATTCGGTTGGGG
448 CGTGGCACGCCCCGAGTGGCCCGTGTG--TGTG-G-GGGGGTTTGGGAGTCAGATTCGGTTGGGG
* * *
180165 GTTAGGGGGAAATTAAATTGGGT-GAGTTTTTTTGTTATAAATGAGGGAAGGTGACCAATGGGTT
509 GTTAGGGGGAAATTAAATTGGGTGGA-TTTTTTTGTTATAAAAGAGGGAGGGGGACCAATGGGTT
* *
180229 GAAAAAGAAAGGTAAAAAAA-ATAGGGTATTGTGGTTTTGTGTTTGGGCAGCTAC--GAGAGAAG
573 GAAAAAGAAAGGTAAAAAAATAT-GAGTATTGTGGTTTTGTGTTTGGGCAGCTACGGGAAAGAAG
* * ** * *
180291 AAGAAGAAGGAAAGGAAAAAA-AGA-AAGAA-AGAAAGCAGCAGAAGAAGAAGAAGAAGAATGTT
637 AAGAAAAAGGAAAGGAAAAAAGAAAGAAGAAGAGAAAAAAG-AAAAGAAGAAGAAGAAGAATTTT
* * *
180353 ATTTTATTTTTTGTGTTTATTTTAATTTTAAATTTATTTTTAAATTTATTTGATTTGTTAGTAG
701 ATTTTATTTTGTGTGTTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAG
* *
180417 TAGCAGTAATTATTTAATTTTTAATTTTAATGTTTTAATGTGATTGATTTGTTATTATAATTTTA
1 TAGTAGTAATTATTTAGTTTTTAATTTTAATG-TTTAATGTGATTGATTTGTTATTATAATTTTA
*
180482 TTTATTTAGTAGGTTGATTAAAGGAGA
65 TTTGTTTAGTAGGTTGATTAAAGGAGA
180509 TAAAAGCTAA
Statistics
Matches: 3305, Mismatches: 416, Indels: 358
0.81 0.10 0.09
Matches are distributed among these distances:
714 5 0.00
715 19 0.01
716 24 0.01
717 92 0.03
718 30 0.01
719 1 0.00
720 8 0.00
723 2 0.00
724 1 0.00
725 4 0.00
726 1 0.00
729 4 0.00
730 1 0.00
731 1 0.00
732 8 0.00
733 1 0.00
734 2 0.00
735 2 0.00
736 8 0.00
740 3 0.00
741 10 0.00
742 60 0.02
743 46 0.01
744 84 0.03
745 176 0.05
746 93 0.03
747 21 0.01
748 41 0.01
749 57 0.02
750 68 0.02
751 28 0.01
752 47 0.01
753 13 0.00
754 41 0.01
755 5 0.00
756 60 0.02
757 14 0.00
758 14 0.00
759 12 0.00
760 43 0.01
761 41 0.01
762 19 0.01
763 84 0.03
764 75 0.02
765 16 0.00
766 64 0.02
767 52 0.02
768 7 0.00
769 154 0.05
770 227 0.07
771 177 0.05
772 139 0.04
773 249 0.08
774 131 0.04
775 186 0.06
776 52 0.02
777 18 0.01
778 74 0.02
779 308 0.09
780 48 0.01
781 27 0.01
782 7 0.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (764 bp):
TAGTAGTAATTATTTAGTTTTTAATTTTAATGTTTAATGTGATTGATTTGTTATTATAATTTTAT
TTGTTTAGTAGGTTGATTAAAGGAGAGTTTTTTACCAAATTAATACAAAATAATTATTTATCTAC
CAAAATGATATCTCCACCCCATTAATTACCAAAATGGTATGTTTTTGGGTGTGGAGGGTACTTAA
TCGGCGGCACCAAGGGGTATTCTGACACTGATTTTTTTAATTTTTTATTATATTTATATATTAAA
AATAAAAAATATAAAATAATGGTGGTGCCAACTTGAGTGGCGGCACCACTTTGCATACATACAGT
ACAAATCAAACAAATAAATACGAGAATGGGATAAAAAAAATACCTGACACATGGGTGGTGTCATG
TTGAGTGGCAGCACCAAAGGTGTCATTCTAAGTGGCGCACCGAGGGTTTTTGGGACACGTGGCAC
GCCCCGAGTGGCCCGTGTGTGTGGGGGGGTTTGGGAGTCAGATTCGGTTGGGGGTTAGGGGGAAA
TTAAATTGGGTGGATTTTTTTGTTATAAAAGAGGGAGGGGGACCAATGGGTTGAAAAAGAAAGGT
AAAAAAATATGAGTATTGTGGTTTTGTGTTTGGGCAGCTACGGGAAAGAAGAAGAAAAAGGAAAG
GAAAAAAGAAAGAAGAAGAGAAAAAAGAAAAGAAGAAGAAGAAGAATTTTATTTTATTTTGTGTG
TTTATTTTAATTTTAAATTTATTTTTAAAGTTATTTAATTTGTTAGTAG
Found at i:178885 original size:21 final size:21
Alignment explanation
Indices: 178849--178896 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
178839 GAGAATAAGA
*
178849 TTATTTTATTTTATTTTAAAAT
1 TTATTTTATCTTATTTT-AAAT
178871 TTATTTTA-CTTATTTTAAAT
1 TTATTTTATCTTATTTTAAAT
178891 TTATTT
1 TTATTT
178897 AATTTGTTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.40
21 7 0.28
22 8 0.32
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (21 bp):
TTATTTTATCTTATTTTAAAT
Found at i:179553 original size:28 final size:27
Alignment explanation
Indices: 179522--179585 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
179512 GGAGAAGAAG
*
179522 AAGAAGAAGGA-AAGGAAAGAAAGAAAGA
1 AAGAAGAAGGAGAA-AAAAGAAA-AAAGA
* *
179550 AAGAAGAAGGAGAAAAAAGAAATAAGG
1 AAGAAGAAGGAGAAAAAAGAAAAAAGA
179577 AAGAAGAAG
1 AAGAAGAAG
179586 AAGGTTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 12 0.38
28 18 0.56
29 2 0.06
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (27 bp):
AAGAAGAAGGAGAAAAAAGAAAAAAGA
Found at i:179577 original size:17 final size:17
Alignment explanation
Indices: 179516--179570 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
179506 GCTACGGGAG
* *
179516 AAGAAGAAGAAGAAGGA
1 AAGAAGAAGGAGAAAGA
179533 AAGGAAAGAA--AGAAAGA
1 AA-G-AAGAAGGAGAAAGA
179550 AAGAAGAAGGAGAAA-A
1 AAGAAGAAGGAGAAAGA
179566 AAGAA
1 AAGAA
179571 ATAAGGAAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
15 5 0.15
16 7 0.21
17 15 0.45
18 1 0.03
19 5 0.15
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (17 bp):
AAGAAGAAGGAGAAAGA
Found at i:179579 original size:24 final size:25
Alignment explanation
Indices: 179522--179587 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
179512 GGAGAAGAAG
179522 AAGAAGAAGGAAAGGAAAGAAAGAAAGA
1 AAGAAGAA-G-AA-GAAAGAAAGAAAGA
* *
179550 AAGAAGAAGGAGAAA-AAAGAAATA
1 AAGAAGAAGAAGAAAGAAAGAAAGA
*
179574 AGGAAGAAGAAGAA
1 AAGAAGAAGAAGAA
179588 GGTTATTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
24 20 0.59
25 4 0.12
26 1 0.03
27 1 0.03
28 8 0.24
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.02
Consensus pattern (25 bp):
AAGAAGAAGAAGAAAGAAAGAAAGA
Found at i:180401 original size:12 final size:12
Alignment explanation
Indices: 180373--180403 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
180363 TTGTGTTTAT
*
180373 TTTAATTTTAAA
1 TTTATTTTTAAA
180385 TTTATTTTTAAA
1 TTTATTTTTAAA
180397 TTTATTT
1 TTTATTT
180404 GATTTGTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TTTATTTTTAAA
Found at i:180963 original size:12 final size:12
Alignment explanation
Indices: 180946--180974 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
180936 GTGTTTATTG
180946 TATTTTTAAATT
1 TATTTTTAAATT
180958 TATTTTTAAATT
1 TATTTTTAAATT
180970 TATTT
1 TATTT
180975 AATTTGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TATTTTTAAATT
Found at i:181191 original size:25 final size:23
Alignment explanation
Indices: 181160--181213 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
181150 TTATTATAAA
*
181160 TTATTTGTTTTGTTTAATTTAA-TTT
1 TTATTTGATTTG-TT-A-TTAATTTT
181185 TTATTTGATTTGTTATTAATTTT
1 TTATTTGATTTGTTATTAATTTT
181208 TTATTT
1 TTATTT
181214 AATAGATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 4 0.15
23 10 0.37
24 2 0.07
25 11 0.41
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.72
Consensus pattern (23 bp):
TTATTTGATTTGTTATTAATTTT
Found at i:181215 original size:12 final size:12
Alignment explanation
Indices: 181176--181216 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
181166 GTTTTGTTTA
181176 ATTTAA-TTTTT
1 ATTTAATTTTTT
* *
181187 ATTTGATTTGTT
1 ATTTAATTTTTT
181199 A-TTAATTTTTT
1 ATTTAATTTTTT
181210 ATTTAAT
1 ATTTAAT
181217 AGATTAAATT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (12 bp):
ATTTAATTTTTT
Found at i:182675 original size:43 final size:43
Alignment explanation
Indices: 182624--182723 Score: 148
Period size: 43 Copynumber: 2.3 Consensus size: 43
182614 TGTTATTCCT
**
182624 TGACATGTTATTAAATTATATTACTTGACCCA-TGTTAATATTG
1 TGACATGTTATTAAATTATATTACTTGA-CCATTGTTAATACCG
* *
182667 TGGCATGTTATTAAATTATATTACTTGACTATTGTTAATACCG
1 TGACATGTTATTAAATTATATTACTTGACCATTGTTAATACCG
182710 TGACATGTTATTAA
1 TGACATGTTATTAA
182724 TTGTGCTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 2 0.04
43 49 0.96
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44
Consensus pattern (43 bp):
TGACATGTTATTAAATTATATTACTTGACCATTGTTAATACCG
Found at i:183901 original size:21 final size:21
Alignment explanation
Indices: 183875--183934 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
183865 AATAGTGCAG
183875 ACTTCTACCGATACAAGTGAC
1 ACTTCTACCGATACAAGTGAC
*
183896 AGTTCTACCGATACAAGTGAC
1 ACTTCTACCGATACAAGTGAC
* * *
183917 TCTTCTACAGAAACAAGT
1 ACTTCTACCGATACAAGT
183935 CTTACTTCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (21 bp):
ACTTCTACCGATACAAGTGAC
Done.