Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014198.1 Kokia drynarioides strain JFW-HI SEQ_129231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  218750

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
999--1077
17
4.6
17
87
0
86
53
5
0
41
1.23
999--1070
34
2.1
34
86
0
99
55
4
0
40
1.19
2071--2137
33
2.0
33
85
8
91
38
10
7
43
1.67
6033--6057
6
4.2
6
100
0
50
16
20
32
32
1.94
6732--7014
114
2.5
114
82
8
362
30
13
16
38
1.88
10997--11348
36
9.8
36
84
2
411
28
13
24
34
1.93
10997--11344
144
2.4
144
94
0
606
27
13
24
34
1.93
13790--13844
26
2.1
26
96
0
101
49
3
12
34
1.59
14647--14712
23
2.9
23
79
0
78
12
19
21
46
1.82
21772--21907
23
5.9
23
80
7
105
14
24
21
39
1.91
21802--21905
46
2.2
46
84
3
127
15
21
22
41
1.90
21805--21954
69
2.2
66
84
11
185
14
22
20
42
1.88
26543--26567
11
2.3
11
100
0
50
52
8
8
32
1.60
38184--38428
53
4.6
53
85
0
303
28
14
22
34
1.94
45440--45688
53
4.7
53
87
0
338
26
15
22
35
1.94
48276--48422
45
3.2
45
75
4
143
42
17
23
15
1.88
65532--65591
9
6.6
9
70
11
50
5
16
0
78
0.92
65530--65591
24
2.7
22
77
18
72
6
16
0
77
0.97
76527--76654
61
2.1
62
94
2
231
34
16
29
19
1.94
77746--77785
20
2.0
21
85
5
55
45
5
15
35
1.68
80918--81154
52
4.4
52
87
5
305
27
14
22
35
1.93
88504--88529
7
3.7
7
100
0
52
26
0
73
0
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
113990--114060
27
2.7
26
82
8
72
2
28
2
66
1.20
125542--125585
21
2.1
21
87
8
63
65
13
6
13
1.44
160236--160288
20
2.5
21
76
14
56
41
3
1
52
1.30
160484--160577
46
2.0
46
97
0
179
28
24
22
24
1.99
160574--160606
16
2.1
16
94
0
57
39
12
6
42
1.67
163582--163627
22
2.1
22
84
8
58
47
4
13
34
1.62
168511--168563
23
2.4
22
76
14
56
50
0
9
39
1.35
172075--172111
6
6.2
6
100
0
74
0
67
0
32
0.91
173795--173830
16
2.2
17
95
5
65
36
0
0
63
0.94
174943--175007
30
2.1
31
88
2
96
41
12
10
35
1.78
179640--179879
105
2.3
104
86
3
322
35
22
13
28
1.92
179640--179879
52
4.6
52
85
2
320
35
22
13
28
1.92
180521--180547
10
2.7
10
100
0
54
40
11
18
29
1.85
182354--182635
52
5.5
52
86
6
387
36
23
14
26
1.93
182353--182641
105
2.8
103
86
4
388
36
23
14
25
1.93
194208--194258
24
2.1
25
82
13
63
76
0
21
1
0.88
194206--194257
15
3.4
14
77
15
50
75
0
23
1
0.91
199165--199219
21
2.6
21
91
0
83
41
25
14
18
1.88
199215--199262
22
2.2
22
84
0
60
33
22
22
20
1.97
199289--199322
15
2.3
15
100
0
68
11
5
35
47
1.65
205344--205377
17
2.0
17
88
11
52
76
0
0
23
0.79
206432--206483
7
7.4
7
82
0
68
30
25
25
19
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
206432--206483
21
2.5
21
90
0
86
30
25
25
19
1.98
206527--206560
15
2.3
15
94
0
59
11
8
32
47
1.71
208265--208432
30
5.7
30
72
10
121
41
25
10
23
1.85
208265--208432
60
2.8
58
79
7
167
41
25
10
23
1.85
208400--208459
29
2.1
28
81
9
68
41
21
8
28
1.82
210874--210902
12
2.4
12
100
0
58
31
0
0
68
0.89
213834--213888
20
2.8
20
80
0
65
20
34
16
29
1.94
216351--216410
29
2.1
29
87
0
84
35
10
11
43
1.75
216795--216823
15
1.9
15
100
0
58
24
0
0
75
0.80
216795--216849
9
6.4
9
72
19
55
25
0
1
72
0.94
218594--218627
17
2.0
17
88
0
50
50
14
5
29
1.67

Tables:   1

The End!