genome.fa.s14199.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014199.1 Kokia drynarioides strain JFW-HI SEQ_129232, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  247569

Tables:   1   

This is table  1  of  1  ( 103 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--43	2	20.0	2	100	0	80	50	0	0	50	1.00
59--85	14	1.9	14	100	0	54	85	0	0	14	0.61
186--230	21	2.2	20	84	15	56	51	0	2	46	1.13
279--325	21	2.2	21	85	7	60	42	0	29	27	1.56
288--331	21	2.1	21	82	0	52	45	0	29	25	1.54
2462--2487	2	13.0	2	100	0	52	0	0	50	50	1.00
8127--8173	22	2.1	23	85	14	64	23	12	19	44	1.85
14446--14546	50	2.0	50	100	0	202	37	14	13	33	1.86
23428--23480	6	9.0	6	76	12	56	41	1	1	54	1.22
23417--23460	17	2.6	17	88	0	70	36	0	4	59	1.18
23428--23480	23	2.2	24	93	3	90	41	1	1	54	1.22
24210--24243	15	2.2	16	94	5	61	55	0	0	44	0.99
24223--24298	21	3.5	20	74	18	55	59	1	2	36	1.20
25343--25513	58	2.9	58	86	6	238	32	28	3	35	1.74
25374--25475	30	3.5	30	70	20	99	34	25	3	36	1.75
25316--25502	29	6.5	29	73	20	133	33	28	3	35	1.73
36306--37135	194	4.2	194	85	3	1063	36	18	21	23	1.95
37449--37518	6	12.0	6	73	11	65	40	1	4	54	1.29
37438--37523	17	4.6	17	74	17	73	38	1	4	55	1.28
37433--37517	11	7.5	11	75	13	57	36	1	4	57	1.27
37449--37504	23	2.4	23	87	0	76	39	0	5	55	1.23
37433--37517	29	3.0	27	84	8	89	36	1	4	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38249--38282	15	2.2	16	89	5	52	58	0	0	41	0.98
38249--38309	18	3.2	19	76	19	63	57	1	3	37	1.25
39339--39410	29	2.5	29	80	6	85	34	23	2	38	1.70
39379--39641	58	4.5	59	86	2	347	31	29	3	35	1.74
39379--39641	115	2.3	117	86	4	381	31	29	3	35	1.74
46670--46755	40	2.2	40	97	0	163	44	4	20	30	1.72
49620--49673	25	2.2	25	96	0	99	61	0	5	33	1.19
53268--53310	18	2.4	18	88	7	61	46	0	0	53	1.00
57810--57844	3	11.7	3	100	0	70	31	34	34	0	1.58
58618--58862	122	2.0	122	98	0	472	31	15	14	37	1.88
59029--59073	19	2.4	20	82	14	60	62	17	4	15	1.49
59401--59520	58	2.1	58	90	0	186	31	1	18	48	1.58
59747--59811	21	3.2	21	71	8	71	26	15	26	32	1.95
61873--61942	34	2.1	34	100	0	140	37	14	18	30	1.90
66008--66058	17	2.9	17	82	11	59	23	0	3	72	1.01
66010--66062	27	1.9	28	88	3	81	22	0	3	73	0.99
66024--66058	19	1.9	18	88	11	54	22	0	2	74	0.95
68176--68265	12	7.9	12	73	9	55	5	3	23	67	1.27
68194--68299	23	4.9	22	76	14	71	9	1	20	67	1.28
68183--68244	32	1.9	32	83	6	81	6	4	22	66	1.35
68194--68279	44	2.0	44	85	0	118	8	2	22	67	1.29
68215--68279	20	3.0	20	82	10	67	7	3	21	67	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68272--68312	22	2.0	22	85	9	59	12	4	9	73	1.24
70904--71263	179	2.0	179	93	0	621	45	15	7	31	1.75
71572--71742	34	5.1	34	79	14	171	36	2	15	45	1.59
78283--78375	34	2.7	35	88	6	127	37	2	17	43	1.61
81314--81447	34	3.9	34	83	8	148	40	0	13	45	1.49
89393--89440	26	1.9	24	87	8	69	39	2	4	54	1.32
96579--96611	16	2.1	16	94	0	57	36	0	0	63	0.95
96624--96687	32	2.1	30	82	5	74	50	4	0	45	1.22
97280--97332	23	2.4	21	87	6	70	58	1	1	37	1.20
99678--99724	23	2.0	23	95	0	85	21	25	21	31	1.98
101829--101862	16	2.1	16	100	0	68	38	5	11	44	1.65
104668--104730	32	2.0	32	93	3	110	46	0	3	50	1.17
112958--113973	507	2.0	506	89	2	1574	31	15	11	41	1.82
114816--114877	24	2.6	24	89	0	88	51	6	19	22	1.69
136901--136933	16	2.0	17	88	5	50	45	3	3	48	1.33
138102--138162	29	2.1	29	100	0	122	42	0	11	45	1.40
142307--142343	14	2.6	15	79	12	51	62	0	0	37	0.96
144316--144392	7	10.6	7	74	10	57	16	19	25	37	1.93
144316--144394	22	3.6	22	67	13	63	16	21	25	36	1.94
144329--144394	15	4.6	14	76	12	71	16	21	25	36	1.94
151419--151456	20	1.9	20	88	0	58	13	13	23	50	1.76
156173--156208	18	2.0	18	94	0	63	33	30	13	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158306--158346	22	1.9	22	85	14	59	36	0	2	60	1.10
158333--158408	28	2.6	31	79	14	88	42	1	1	55	1.16
158333--158408	29	2.6	30	76	19	79	42	1	1	55	1.16
168115--168299	42	4.4	42	82	4	196	35	10	25	28	1.89
169404--169481	22	3.5	22	92	1	129	43	25	20	10	1.83
169542--169589	24	1.9	26	84	16	66	31	22	0	45	1.53
171529--171580	9	5.8	9	86	0	77	46	17	9	26	1.79
171526--171580	18	3.1	18	94	0	101	47	16	9	27	1.76
171728--171785	9	5.8	10	77	20	59	68	1	3	25	1.14
177933--177992	28	2.2	27	82	14	70	18	3	1	76	1.00
177967--178022	17	3.3	17	73	9	51	19	3	7	69	1.27
182032--182056	2	12.5	2	100	0	50	48	0	0	52	1.00
184686--184721	19	1.9	19	88	5	56	38	25	0	36	1.56
184745--184781	18	2.1	18	100	0	74	27	5	16	51	1.66
185156--185189	9	3.9	9	88	3	52	58	0	0	41	0.98
187409--187510	37	2.8	36	75	11	107	29	22	15	32	1.95
187634--187678	14	3.2	14	87	0	72	33	4	13	48	1.62
187630--187774	28	5.2	28	77	6	150	33	11	12	42	1.79
187713--187779	14	4.9	14	70	1	55	29	10	13	46	1.76
187630--187819	28	6.9	28	75	11	90	32	13	13	41	1.82
189690--189750	22	2.8	22	87	7	81	72	1	11	14	1.20
189716--189745	15	1.9	16	93	6	53	70	0	13	16	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190550--190592	19	2.3	19	84	8	52	58	4	0	37	1.19
195776--195818	19	2.3	19	84	8	52	58	4	0	37	1.19
196400--196439	3	13.3	3	100	0	80	65	0	0	35	0.93
199305--199362	20	3.0	20	77	10	57	55	3	1	39	1.27
200334--200390	25	2.3	26	85	11	75	52	3	8	35	1.50
204877--204917	17	2.4	18	80	12	50	78	4	14	2	1.03
222259--222302	20	2.2	20	84	8	54	27	0	4	68	1.09
222460--222510	24	2.1	24	85	3	66	60	5	9	23	1.50
223575--223604	6	5.0	6	95	0	51	36	0	63	0	0.95
224977--225004	2	14.0	2	100	0	56	50	0	0	50	1.00
240280--240351	32	2.3	32	83	7	94	38	15	12	33	1.85
240335--240391	30	1.9	30	88	0	87	54	15	8	21	1.68
244995--245064	18	4.2	18	76	23	82	31	12	18	37	1.89
245007--245074	30	2.3	30	100	0	136	29	13	20	36	1.91
246530--246590	31	2.0	31	93	0	104	34	11	11	42	1.77

Tables:   1

The End!