genome.fa.s14208.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014208.1 Kokia drynarioides strain JFW-HI SEQ_129241, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  219927

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10773--10831	29	2.0	29	96	0	109	20	18	6	54	1.66
17164--17192	15	1.9	15	100	0	58	51	6	0	41	1.28
19147--19319	80	2.2	81	89	3	269	42	3	13	40	1.61
22255--22288	15	2.3	15	89	0	50	29	8	2	58	1.43
23831--23883	26	2.0	26	100	0	106	28	11	30	30	1.91
27969--28015	21	2.2	21	96	0	85	34	23	10	31	1.89
40620--40674	26	2.1	26	82	0	65	36	18	9	36	1.82
41477--41623	76	1.9	76	92	0	249	31	23	16	28	1.96
44896--44942	10	4.6	10	86	2	67	42	19	0	38	1.51
44896--44941	20	2.2	21	88	3	76	43	19	0	36	1.51
44850--44994	78	1.9	77	84	4	193	42	20	4	33	1.71
44918--45058	58	2.4	58	88	1	212	38	21	4	36	1.73
45023--45121	20	4.4	23	83	11	93	38	20	4	37	1.71
45030--45088	10	5.8	10	93	2	100	38	20	1	38	1.63
45031--45096	20	3.3	20	91	4	107	37	21	3	37	1.69
45030--45096	30	2.2	30	89	5	100	38	20	2	37	1.68
45076--45153	25	3.2	25	87	3	106	41	16	6	35	1.74
45752--45816	21	3.1	21	77	0	67	32	20	13	33	1.91
53070--53300	52	4.5	51	82	5	250	28	13	22	35	1.92
53070--53300	104	2.2	104	84	6	299	28	13	22	35	1.92
59650--59842	52	3.7	51	80	6	201	25	15	23	35	1.94
61296--61339	22	2.0	22	100	0	88	31	18	22	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62915--62982	21	3.2	21	74	0	64	33	19	17	29	1.95
71313--71346	17	1.9	18	88	5	52	47	23	11	17	1.81
72124--72171	20	2.5	19	89	3	78	41	22	18	16	1.90
72168--72230	22	2.9	22	82	0	72	23	19	30	26	1.98
78395--78428	2	17.0	2	100	0	68	50	0	0	50	1.00
79315--79368	7	8.0	7	75	22	53	42	25	16	14	1.87
79313--79371	20	3.0	20	85	9	77	44	23	16	15	1.86
79316--79369	27	2.0	27	92	7	92	40	25	18	14	1.89
79416--79450	16	2.2	16	90	5	54	8	8	34	48	1.64
80261--80299	19	2.1	19	85	0	51	33	7	23	35	1.83
85087--85139	22	2.4	22	100	0	106	24	20	18	35	1.95
85147--85200	24	2.2	24	86	0	72	20	11	16	51	1.74
97271--97311	20	2.0	21	86	13	59	24	2	0	73	0.96
98405--98552	73	2.0	73	85	2	199	22	18	19	39	1.93
107309--107342	16	2.1	16	89	10	52	29	26	11	32	1.92
108265--108453	23	8.3	23	87	3	267	47	13	3	36	1.59
108265--108457	90	2.1	89	90	4	305	47	13	3	35	1.59
108847--109107	36	7.2	36	88	2	364	37	22	9	30	1.86
115233--115264	6	5.3	6	100	0	64	84	0	0	15	0.63
115605--115631	9	3.0	9	100	0	54	33	22	11	33	1.89
142399--142435	20	1.9	20	88	5	58	32	5	10	51	1.60
144374--144429	20	2.8	20	83	5	69	35	7	8	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155100--155141	17	2.5	17	96	0	75	26	21	21	30	1.98
160484--160539	17	3.2	17	82	2	58	19	17	12	50	1.78
164631--164660	14	2.1	15	93	6	53	63	0	20	16	1.31
170094--170145	6	8.7	6	82	0	50	21	1	3	73	1.10
170093--170145	18	2.9	18	78	8	63	22	1	3	71	1.12
175493--175580	23	4.0	23	86	8	128	47	15	4	31	1.66
175974--176168	36	5.4	36	86	1	257	34	22	10	32	1.88
175974--176168	108	1.8	108	88	2	302	34	22	10	32	1.88
189368--189432	28	2.3	29	80	17	75	44	0	3	52	1.16
189417--189458	6	7.0	6	100	0	84	33	0	0	66	0.92
189534--189562	8	3.6	8	100	0	58	75	0	0	24	0.80
189830--189929	50	2.0	50	98	0	191	35	20	17	28	1.94
191296--191335	21	1.9	21	94	0	71	55	0	2	42	1.13
191278--191332	25	2.2	24	78	9	56	58	3	1	36	1.26
191983--192055	6	12.3	6	92	2	112	39	43	0	16	1.48
194521--194606	22	3.7	24	73	16	58	47	1	3	47	1.26
194587--194628	20	2.1	21	82	8	52	52	4	2	40	1.35
209597--209653	9	6.6	8	82	8	60	71	1	0	26	0.95
209659--209710	25	2.1	25	85	3	70	50	1	0	48	1.12
212397--212441	23	2.0	23	90	0	72	13	4	33	48	1.62
212398--212453	23	2.4	23	81	0	67	12	3	30	53	1.55
213199--213248	23	2.2	23	96	0	91	26	30	6	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213162--213281	64	1.9	64	94	0	213	31	23	10	34	1.89
213229--213440	46	4.8	45	85	6	258	26	18	22	32	1.97
213229--213440	90	2.4	86	83	9	259	26	18	22	32	1.97

Tables:   1

The End!