genome.fa.s14212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014212.1 Kokia drynarioides strain JFW-HI SEQ_129245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204688

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14671--14709	12	3.2	12	88	3	60	89	0	10	0	0.48
14671--14709	13	3.1	13	88	7	62	89	0	10	0	0.48
18123--18185	20	3.0	20	80	15	74	46	17	0	36	1.49
18123--18187	21	3.2	20	82	12	78	47	16	0	35	1.47
38822--38881	30	2.0	30	90	0	93	58	6	3	31	1.40
56560--56639	40	2.1	38	84	13	101	60	1	3	35	1.23
56929--56987	31	2.0	30	86	6	84	47	8	6	37	1.61
56924--56990	31	2.3	27	80	14	80	44	7	7	40	1.61
58567--58621	23	2.4	23	78	0	65	54	0	7	38	1.28
58605--58669	31	2.2	29	81	10	71	44	1	3	50	1.26
78564--78616	24	2.2	25	77	16	58	62	7	0	30	1.23
80960--80985	3	8.7	3	100	0	52	0	0	65	34	0.93
86344--86399	22	2.6	21	83	13	69	41	42	5	10	1.62
86763--86863	31	3.3	31	87	2	143	37	11	11	38	1.79
86759--86904	60	2.4	60	78	8	145	37	11	11	39	1.78
87032--87090	29	2.0	29	86	3	82	50	13	10	25	1.72
108266--108327	21	3.2	21	69	21	71	48	11	24	16	1.78
108279--108343	18	3.5	18	71	21	62	46	12	27	13	1.79
108264--108338	37	2.0	37	100	0	150	46	10	26	16	1.79
108264--108321	19	3.1	19	68	22	59	46	8	27	17	1.77
111972--112161	60	3.2	58	78	6	202	28	19	17	34	1.95
112232--112425	61	3.1	64	76	10	222	41	13	15	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112162--112818	123	5.5	121	75	13	444	39	14	17	28	1.89
112455--112815	59	6.0	59	69	14	184	38	14	18	28	1.90
112332--112548	109	2.0	109	84	4	285	42	13	13	30	1.83
112552--112777	59	3.8	59	74	9	188	36	15	18	29	1.92
112223--112645	233	1.8	232	80	6	516	41	13	16	28	1.87
112516--112778	60	4.4	59	74	6	215	38	14	17	30	1.89
112517--112815	60	5.0	55	71	12	168	38	15	18	28	1.91
119245--119297	23	2.3	22	81	9	61	56	0	3	39	1.17
122925--122966	2	21.0	2	85	0	57	42	0	7	50	1.30
122926--122970	6	7.5	6	97	0	63	40	0	8	51	1.33
136171--136196	12	2.2	12	100	0	52	30	0	42	26	1.56
137605--137634	4	7.5	4	100	0	60	50	50	0	0	1.00
138166--138207	22	1.9	22	90	0	66	16	14	7	61	1.53
138877--138916	17	2.3	18	76	24	50	7	15	0	77	0.98
141136--141204	36	1.9	36	88	5	104	42	0	7	50	1.30
147638--147669	16	1.9	17	93	6	57	31	31	18	18	1.95
157216--157266	25	2.1	25	85	3	68	41	9	13	35	1.78
165471--165499	4	7.2	4	100	0	58	75	0	0	24	0.80
172433--172617	91	2.0	91	93	2	318	35	8	3	52	1.48
173186--173339	77	2.0	77	96	0	281	33	19	19	27	1.96
179833--179860	7	4.0	7	100	0	56	14	42	0	42	1.45
190675--190740	24	2.9	22	84	8	87	51	7	19	21	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190684--190729	24	1.9	24	100	0	92	45	8	23	21	1.80
191548--191621	24	3.0	24	84	4	94	67	18	5	8	1.36
191546--191612	12	5.6	12	80	0	80	70	17	4	7	1.28
191614--191710	34	3.0	32	85	5	124	69	20	3	7	1.27
193197--193240	18	2.3	20	84	7	56	68	0	2	29	1.02
204430--204557	42	3.1	42	73	10	138	27	46	10	15	1.78
204449--204557	21	5.3	21	69	18	77	28	47	8	15	1.74
204551--204641	18	5.1	18	68	16	55	39	45	4	10	1.60
204449--204611	39	4.2	39	76	6	143	31	46	6	14	1.71
204543--204611	36	1.9	36	87	0	102	36	46	4	13	1.62
204430--204593	81	2.1	80	87	3	233	28	46	8	16	1.76
204623--204675	24	2.2	24	86	6	72	37	54	0	7	1.29

Tables:   1

The End!