genome.fa.s14213.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014213.1 Kokia drynarioides strain JFW-HI SEQ_129246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212405

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155--204	4	12.5	4	100	0	100	24	0	26	50	1.50
6274--6304	2	15.5	2	100	0	62	51	0	0	48	1.00
9780--9825	20	2.3	20	82	14	67	47	15	17	19	1.82
10167--10487	178	1.8	175	87	4	475	40	9	8	41	1.68
12938--12981	2	22.5	2	95	4	81	52	0	0	47	1.00
14729--14786	30	2.1	28	87	12	84	62	10	6	20	1.50
15107--15154	14	3.5	13	77	11	51	62	2	4	31	1.26
18891--18919	9	3.3	9	90	9	51	48	0	0	51	1.00
19582--19625	20	2.1	20	83	8	52	43	9	2	45	1.48
23868--23894	13	2.1	13	100	0	54	62	7	14	14	1.51
27781--27845	32	1.9	35	82	14	84	50	6	4	38	1.48
33006--33033	14	2.0	14	100	0	56	28	28	0	42	1.56
36283--36330	24	1.9	26	84	16	66	45	0	22	31	1.53
36393--36488	23	4.2	23	76	7	70	13	25	21	39	1.90
37423--37465	17	2.3	20	84	11	56	16	9	6	67	1.40
37543--37583	18	2.3	18	86	0	55	51	4	2	41	1.36
38427--38481	27	2.1	26	81	18	62	25	10	1	61	1.39
38637--38683	19	2.3	20	82	13	53	34	2	0	63	1.06
40508--40746	106	2.3	105	91	2	392	33	35	8	21	1.84
42825--42851	5	5.4	5	100	0	54	18	0	0	81	0.69
45937--45971	18	1.9	18	100	0	70	40	17	14	28	1.88
50956--51016	31	2.0	31	90	0	95	34	6	11	47	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57445--57479	17	2.1	16	89	5	52	42	0	0	57	0.99
61237--61270	16	2.1	17	88	5	52	32	0	0	67	0.91
61907--61968	22	2.8	22	90	0	97	35	27	16	20	1.94
67282--67339	22	2.6	22	81	8	73	67	8	17	6	1.39
70178--70215	14	2.5	16	83	8	53	65	0	2	31	1.06
71730--71764	15	2.3	15	90	0	52	51	2	5	40	1.40
72750--72776	4	6.8	4	100	0	54	51	22	0	25	1.48
72780--73077	161	1.9	158	81	6	363	30	10	22	36	1.88
78803--78871	23	3.0	23	85	6	95	44	18	10	26	1.81
83699--83738	16	2.5	17	84	8	57	35	0	2	62	1.09
87384--87422	10	3.8	10	83	6	51	58	2	5	33	1.33
88038--88066	5	5.8	5	100	0	58	20	0	0	79	0.74
94574--94640	29	2.3	30	75	12	68	35	5	14	43	1.71
100653--100683	13	2.5	12	90	10	53	58	3	0	38	1.15
101232--101268	19	2.0	18	89	5	56	78	5	10	5	1.08
104904--104939	18	2.0	18	88	0	54	30	0	2	66	1.06
104935--104979	22	2.0	23	82	4	56	53	0	2	44	1.13
104955--104991	17	2.2	16	90	4	56	51	0	2	45	1.15
105007--105083	40	1.9	40	84	5	102	58	2	2	36	1.26
106254--106573	100	3.2	98	77	9	321	27	10	27	34	1.89
120529--120587	27	2.2	26	82	14	68	61	1	1	35	1.16
121550--121612	32	1.9	34	90	6	103	38	1	1	58	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121775--121831	25	2.2	25	81	9	60	43	3	5	47	1.43
122935--122969	8	4.4	8	96	0	61	14	20	37	28	1.91
124467--124495	15	1.9	15	100	0	58	24	20	34	20	1.97
156035--156087	25	2.1	26	82	10	65	62	1	0	35	1.06
157530--157554	2	12.5	2	100	0	50	48	0	0	52	1.00
167458--167496	17	2.2	18	86	13	55	74	0	0	25	0.82
167458--167496	9	4.4	9	83	6	53	74	0	0	25	0.82
167458--167497	19	2.2	18	86	4	53	75	0	0	25	0.81
167467--167515	20	2.7	18	84	9	55	71	0	4	24	1.03
171759--171825	29	2.3	29	92	0	116	50	13	10	25	1.73
171817--171878	31	2.0	31	87	0	88	58	12	12	16	1.64
173376--173414	20	2.0	20	84	0	51	66	0	5	28	1.12
176633--176803	86	2.0	85	97	1	324	33	12	17	36	1.88
186028--186064	4	9.2	4	100	0	74	24	0	24	51	1.49
187965--187999	18	1.9	18	100	0	70	34	17	8	40	1.80
192617--192659	18	2.4	18	88	7	61	53	0	0	46	1.00
195061--195380	176	1.8	171	87	3	478	37	23	12	26	1.90
200350--200384	1	35.0	1	100	0	70	100	0	0	0	0.00

Tables:   1

The End!