Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014221.1 Kokia drynarioides strain JFW-HI SEQ_129254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5073
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32


Found at i:2426 original size:42 final size:39

Alignment explanation


    Indices: 2349--2428  Score: 115
    Period size: 42  Copynumber: 2.0  Consensus size: 39

       2339 CATAGTATGT

                       *                  *        
       2349 TTGCCAATTGTTAATTGTTCATCAATCCAATAGGAGAGC
          1 TTGCCAATTGTAAATTGTTCATCAATCCAAGAGGAGAGC

                                                     
       2388 TTGCCAATTGTAAATTGTTCATCATCAATCCAAGAGGAGAG
          1 TTGCCAATTGTAAATTG-T--TCATCAATCCAAGAGGAGAG

       2429 ATCAAGTGAA


Statistics
Matches: 36,  Mismatches: 2, Indels: 3
        0.88            0.05        0.07

Matches are distributed among these distances:
  39   16  0.44
  40    1  0.03
  42   19  0.53

ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31


Consensus pattern (39 bp):   
TTGCCAATTGTAAATTGTTCATCAATCCAAGAGGAGAGC
Done.