genome.fa.s14222.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014222.1 Kokia drynarioides strain JFW-HI SEQ_129255, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68707

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147--501	30	12.0	29	75	13	246	38	24	2	35	1.68
151--510	59	6.0	59	76	10	295	38	23	2	34	1.69
3578--3620	19	2.3	19	80	8	52	46	2	27	23	1.64
9825--9857	12	2.8	12	100	0	66	33	27	15	24	1.95
10971--11177	115	1.8	114	87	5	310	35	17	23	23	1.95
11086--11883	206	3.9	202	83	3	940	35	18	23	21	1.95
11086--11883	412	2.0	406	85	1	1101	35	18	23	21	1.95
12220--12275	6	9.7	6	84	7	80	44	0	1	53	1.11
12209--12275	23	2.9	23	88	0	89	41	0	2	55	1.15
12224--12290	17	3.8	17	86	9	82	46	1	1	50	1.19
14233--14312	39	2.1	39	100	0	160	40	5	15	40	1.68
15312--15506	100	2.0	100	98	0	381	30	29	9	30	1.89
15340--15529	47	3.9	47	71	13	186	27	32	8	31	1.88
21628--22466	194	4.3	194	83	5	902	23	21	17	36	1.94
34447--34729	58	4.9	57	77	11	177	38	4	26	30	1.77
34491--34729	58	4.1	58	82	8	283	37	4	27	30	1.76
34491--34741	115	2.2	116	81	11	309	37	3	26	31	1.75
34526--34809	30	9.8	30	72	20	176	37	4	25	32	1.76
34491--34801	58	5.3	58	78	12	259	37	4	25	31	1.76
36713--36752	16	2.5	16	95	0	71	20	22	32	25	1.98
39289--39350	30	2.1	30	93	0	106	24	4	12	58	1.54
59869--59912	22	2.0	22	90	0	70	20	22	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63720--63770	15	3.4	15	91	0	84	25	19	13	41	1.88
68197--68239	14	3.0	14	77	16	52	60	6	0	32	1.23

Tables:   1

The End!