Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014224.1 Kokia drynarioides strain JFW-HI SEQ_129257, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4294
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.33

Warning! 46 characters in sequence are not A, C, G, or T


Found at i:2256 original size:32 final size:30

Alignment explanation


    Indices: 2219--2293  Score: 84
    Period size: 27  Copynumber: 2.5  Consensus size: 30

       2209 TCGATGTGAC

                                     *      
       2219 TAAATTTAATTCGATTGTTTTAATTTTACCTT
          1 TAAATTTAATTCGATT-TTTT-ATTATACCTT

                                      **  
       2251 TAAATTTAATT--A-TTTTTATTATATTTT
          1 TAAATTTAATTCGATTTTTTATTATACCTT

                            
       2278 TAAATTTAATTCGATT
          1 TAAATTTAATTCGATT

       2294 AATTCACTTA


Statistics
Matches: 37,  Mismatches: 3, Indels: 8
        0.77            0.06        0.17

Matches are distributed among these distances:
  27   18  0.49
  28    4  0.11
  29    2  0.05
  30    2  0.05
  32   11  0.30

ACGTcount: A:0.32, C:0.05, G:0.04, T:0.59


Consensus pattern (30 bp):   
TAAATTTAATTCGATTTTTTATTATACCTT

Done.