Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014226.1 Kokia drynarioides strain JFW-HI SEQ_129259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 742

Length: 1238
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34


Found at i:578 original size:7 final size:7

Alignment explanation


    Indices: 566--593  Score: 56
    Period size: 7  Copynumber: 4.0  Consensus size: 7

        556 AGAAGTTCTT

                   
        566 AAATTTA
          1 AAATTTA

                   
        573 AAATTTA
          1 AAATTTA

                   
        580 AAATTTA
          1 AAATTTA

                   
        587 AAATTTA
          1 AAATTTA

        594 TATTTTTCAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43


Consensus pattern (7 bp):   
AAATTTA

Done.