Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01001423.1 Kokia drynarioides strain JFW-HI SEQ_112924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7030
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38


Found at i:114 original size:24 final size:22

Alignment explanation


    Indices: 87--147  Score: 63
    Period size: 24  Copynumber: 2.8  Consensus size: 22

         77 AATTTTTTAA

                                    
         87 ATTAAAATGTAATTTTATTAATAT
          1 ATTAAAATGTAATTTTA-TAA-AT

                 **               
        111 ATTAATTTGTAATTTTATAAAT
          1 ATTAAAATGTAATTTTATAAAT

            *                
        133 TTTAAAA-GT-ATTTTA
          1 ATTAAAATGTAATTTTA

        148 AACACATATT


Statistics
Matches: 32,  Mismatches: 5, Indels: 4
        0.78            0.12        0.10

Matches are distributed among these distances:
  20    6  0.19
  21    2  0.06
  22    6  0.19
  23    3  0.09
  24   15  0.47

ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52


Consensus pattern (22 bp):   
ATTAAAATGTAATTTTATAAAT

Found at i:5207 original size:19 final size:17

Alignment explanation


    Indices: 5170--5203  Score: 50
    Period size: 18  Copynumber: 1.9  Consensus size: 17

       5160 CGAATTAAAT

                     *       
       5170 AAAAATAAATTTAATTA
          1 AAAAATAAAATTAATTA

                             
       5187 AAAAATTAAAATTAATT
          1 AAAAA-TAAAATTAATT

       5204 TAAACTTTAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    5  0.33
  18   10  0.67

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (17 bp):   
AAAAATAAAATTAATTA
Done.