genome.fa.s14239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014239.1 Kokia drynarioides strain JFW-HI SEQ_129272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  163769

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5740--5796	28	2.0	28	100	0	114	28	21	3	47	1.67
12036--12066	2	15.5	2	100	0	62	51	0	0	48	1.00
14536--14580	23	2.0	22	83	12	56	8	17	20	53	1.70
24228--24261	2	17.0	2	100	0	68	0	0	50	50	1.00
24586--24692	43	2.5	43	80	3	117	22	16	19	41	1.90
26065--26131	10	6.9	10	77	13	59	43	0	2	53	1.16
26734--26804	23	3.0	23	85	8	90	57	8	7	26	1.54
26724--26804	24	3.4	24	83	10	103	55	8	7	28	1.57
34187--34269	24	3.5	24	86	5	114	55	8	7	28	1.56
41960--41997	16	2.3	17	95	4	69	44	7	0	47	1.32
42663--42822	7	23.1	7	76	5	83	24	0	30	45	1.58
42667--42765	21	4.8	21	81	7	103	23	0	26	50	1.49
42695--42753	20	2.9	21	87	2	84	28	0	18	52	1.46
44984--45321	30	11.4	30	77	12	143	36	1	24	37	1.66
44984--45237	59	4.3	59	74	10	171	37	1	23	37	1.66
44984--45286	29	10.2	28	79	12	179	35	1	25	36	1.67
45038--45330	59	5.0	57	78	12	263	35	1	25	37	1.65
45039--45330	30	9.9	30	79	6	235	34	1	26	37	1.65
45039--45330	29	9.9	29	77	8	119	34	1	26	37	1.65
46113--46151	15	2.6	15	79	0	51	15	2	7	74	1.15
47519--47583	18	3.6	18	83	8	87	20	21	24	33	1.97
49683--49755	24	3.0	24	76	15	69	67	4	2	26	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49701--49769	29	2.4	28	83	9	86	71	2	1	24	1.09
58881--58937	24	2.4	24	84	0	69	50	7	12	29	1.66
58893--58943	24	2.1	24	92	0	84	56	3	9	29	1.49
59469--59522	22	2.5	22	93	0	90	37	20	14	27	1.92
59593--59620	6	4.7	6	100	0	56	50	32	0	17	1.47
62648--62699	25	2.1	25	85	0	68	30	0	1	67	1.02
62652--62709	20	2.9	19	72	7	62	34	0	3	62	1.12
66269--66375	56	1.9	56	96	0	196	25	15	16	42	1.88
72408--72446	18	2.3	16	87	12	60	48	0	0	51	1.00
72396--72449	17	3.1	17	86	5	72	40	0	3	55	1.17
73380--73437	30	1.9	30	83	13	75	62	1	10	25	1.37
73831--74050	29	7.5	30	75	15	158	34	26	3	35	1.74
73760--74021	29	8.9	30	75	12	208	33	27	3	34	1.75
73823--74042	59	3.7	59	85	8	306	34	26	3	35	1.74
73854--74021	89	1.9	90	86	6	243	32	26	4	36	1.76
77273--77359	24	3.5	24	76	11	93	33	18	31	17	1.94
77237--77443	52	3.9	52	82	2	198	37	17	25	19	1.94
77233--77454	28	8.2	28	70	9	149	37	16	24	21	1.93
81507--81543	2	18.5	2	100	0	74	51	0	0	48	1.00
93290--93343	28	1.9	28	84	0	72	35	1	1	61	1.18
98499--98533	18	2.0	17	94	5	61	68	5	0	25	1.11
99924--100600	174	3.9	174	88	2	903	28	17	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104191--104217	3	9.0	3	100	0	54	33	66	0	0	0.92
108797--108852	21	2.5	21	78	21	60	51	1	3	42	1.29
108910--108942	16	2.0	17	94	5	59	66	0	0	33	0.92
109053--109085	15	2.2	15	89	10	50	66	0	0	33	0.92
127853--127890	11	3.5	11	82	13	51	36	0	13	50	1.42
127849--127890	22	1.9	22	90	0	66	35	0	11	52	1.38
127849--127891	12	3.8	12	84	12	54	34	0	11	53	1.37
127871--127936	6	10.8	6	71	9	53	37	3	3	56	1.30
128767--128800	15	2.2	16	94	5	61	55	0	0	44	0.99
128744--128829	36	2.3	38	81	16	92	51	3	3	41	1.36
129890--129972	29	2.8	30	81	3	96	42	22	1	33	1.62
129946--129990	22	2.1	21	95	4	81	37	31	0	31	1.58
129963--130062	29	3.5	28	75	8	94	38	32	4	26	1.75
130101--130189	31	2.9	30	77	12	76	33	25	4	35	1.77
130115--130189	31	2.4	31	86	8	100	34	24	2	38	1.69
129968--130208	29	8.2	29	66	18	92	35	27	5	31	1.80
144884--144944	26	2.2	26	85	11	77	26	3	13	57	1.51
152434--152553	25	4.8	24	77	7	105	34	23	17	25	1.96
152426--152552	50	2.5	50	80	2	148	34	25	16	23	1.95
154341--154406	33	2.0	33	96	0	123	45	1	33	19	1.60
159118--159161	6	7.3	6	100	0	88	0	0	34	65	0.93

Tables:   1

The End!