Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014244.1 Kokia drynarioides strain JFW-HI SEQ_129277, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8784
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:3235 original size:6 final size:6

Alignment explanation


    Indices: 3224--3257  Score: 59
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       3214 TTATCATTTT

                                         *         
       3224 ATATAC ATATAC ATATAC ATATAC ACATAC ATAT
          1 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT

       3258 CCCCCTTTGA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32


Consensus pattern (6 bp):   
ATATAC

Found at i:7726 original size:6 final size:6

Alignment explanation


    Indices: 7715--7748  Score: 59
    Period size: 6  Copynumber: 5.7  Consensus size: 6

       7705 TTATCATTTT

                                         *         
       7715 ATATAC ATATAC ATATAC ATATAC ACATAC ATAT
          1 ATATAC ATATAC ATATAC ATATAC ATATAC ATAT

       7749 CCCCCTTTGA


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.50, C:0.18, G:0.00, T:0.32


Consensus pattern (6 bp):   
ATATAC

Done.