genome.fa.s14251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014251.1 Kokia drynarioides strain JFW-HI SEQ_129284, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30107

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32--71	11	3.7	11	87	12	57	45	0	2	52	1.14
162--197	16	2.2	16	90	5	54	47	5	0	47	1.25
153--210	28	2.1	28	83	6	73	43	8	0	48	1.34
11863--11896	15	2.3	15	90	5	52	50	5	8	35	1.58
15237--15407	29	5.8	29	73	13	118	33	1	28	36	1.68
15234--15407	58	3.0	58	82	3	215	32	1	29	35	1.68
15210--15407	29	6.8	28	72	17	93	33	2	28	34	1.71
15361--15427	31	2.2	30	78	5	73	37	4	20	37	1.73
16506--16530	12	2.1	12	100	0	50	40	0	0	60	0.97
18016--18748	206	3.6	205	90	1	1128	22	22	19	35	1.96
18773--18994	77	2.9	77	82	2	257	23	18	31	26	1.98
18787--18999	39	5.5	38	72	13	148	23	17	31	27	1.97
19077--19262	101	1.8	101	88	0	282	28	16	19	35	1.94
19356--19606	100	2.5	99	79	8	255	15	23	19	41	1.90
19353--19602	50	5.1	50	68	13	142	15	24	19	40	1.90
19460--19602	49	2.9	49	74	12	132	14	25	19	39	1.90
19471--19622	48	3.1	49	74	7	148	13	24	20	42	1.87
20840--20909	32	2.2	32	84	5	88	1	18	2	77	0.97
26357--26646	29	9.9	29	69	13	103	33	4	27	33	1.78
26445--26764	60	5.4	58	77	7	252	33	4	28	34	1.76
26506--26772	30	8.9	28	73	13	126	31	2	28	36	1.73
26504--26772	29	9.0	30	68	16	132	31	2	29	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27918--27966	12	4.1	12	89	0	80	42	0	2	55	1.11

Tables:   1

The End!