Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014260.1 Kokia drynarioides strain JFW-HI SEQ_129293, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6443
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31

Warning! 50 characters in sequence are not A, C, G, or T


Found at i:602 original size:16 final size:16

Alignment explanation


    Indices: 551--604  Score: 65
    Period size: 16  Copynumber: 3.4  Consensus size: 16

        541 TTTGGTTCGC

                       *    
        551 TGTAATGGAATGGAGT
          1 TGTAATGGAATAGAGT

                   *       *
        567 TGTAATGTAATAGAGC
          1 TGTAATGGAATAGAGT

                             
        583 TGTAATGGAATATG-GT
          1 TGTAATGGAATA-GAGT

                  
        599 TGTAAT
          1 TGTAAT

        605 CAATATTTCA


Statistics
Matches: 32,  Mismatches: 5, Indels: 2
        0.82            0.13        0.05

Matches are distributed among these distances:
  16   31  0.97
  17    1  0.03

ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35


Consensus pattern (16 bp):   
TGTAATGGAATAGAGT

Found at i:5347 original size:21 final size:21

Alignment explanation


    Indices: 5303--5349  Score: 67
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       5293 CTTGAGTCCG

                            ** * 
       5303 AATTCGAAGTCTATTTTGTTA
          1 AATTCGAAGTCTATTTCATCA

                                 
       5324 AATTCGAAGTCTATTTCATCA
          1 AATTCGAAGTCTATTTCATCA

                 
       5345 AATTC
          1 AATTC

       5350 AAACCCGAAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.32, C:0.15, G:0.11, T:0.43


Consensus pattern (21 bp):   
AATTCGAAGTCTATTTCATCA
Done.