Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014263.1 Kokia drynarioides strain JFW-HI SEQ_129296, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5586
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.35


Found at i:5260 original size:20 final size:24

Alignment explanation


    Indices: 5235--5279  Score: 62
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       5225 TGTAGATTTG

                                    
       5235 TGTT-AATT-AAA-ATT-AATGCT
          1 TGTTAAATTGAAACATTAAATGCT

                                    
       5255 TGTTAAATTGAAACATTAAATGCT
          1 TGTTAAATTGAAACATTAAATGCT

             
       5279 T
          1 T

       5280 TATTTTGTGG


Statistics
Matches: 21,  Mismatches: 0, Indels: 4
        0.84            0.00        0.16

Matches are distributed among these distances:
  20    4  0.19
  21    4  0.19
  22    3  0.14
  23    3  0.14
  24    7  0.33

ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42


Consensus pattern (24 bp):   
TGTTAAATTGAAACATTAAATGCT
Done.