Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014267.1 Kokia drynarioides strain JFW-HI SEQ_129300, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2211
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.34


Found at i:1950 original size:17 final size:16

Alignment explanation


    Indices: 1923--1979  Score: 62
    Period size: 17  Copynumber: 3.4  Consensus size: 16

       1913 AATAAATAAA

                *           
       1923 AATACATGAATAAAAT
          1 AATAAATGAATAAAAT

                            * 
       1939 AATTAAATGAATACAATT
          1 AA-TAAATGAATA-AAAT

                             
       1957 AATAACAT-AATAAAAT
          1 AATAA-ATGAATAAAAT

                   
       1973 AATAAAT
          1 AATAAAT

       1980 AGAAGTAACT


Statistics
Matches: 35,  Mismatches: 3, Indels: 7
        0.78            0.07        0.16

Matches are distributed among these distances:
  15    2  0.06
  16   10  0.29
  17   16  0.46
  18    7  0.20

ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28


Consensus pattern (16 bp):   
AATAAATGAATAAAAT
Done.