genome.fa.s14269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014269.1 Kokia drynarioides strain JFW-HI SEQ_129302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  222668

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7828--7871	3	14.7	3	100	0	88	31	0	0	68	0.90
8369--8422	9	6.0	9	77	0	63	55	1	1	40	1.21
8353--8424	18	4.1	18	73	5	58	62	1	1	34	1.13
8397--8490	42	2.3	40	75	10	93	58	2	2	37	1.22
8471--8500	12	2.6	12	94	5	53	70	0	0	30	0.88
14193--14259	30	2.3	29	86	2	89	38	0	1	59	1.06
14194--14270	30	2.6	31	81	8	88	36	0	1	62	1.04
14367--14577	90	2.3	90	80	5	230	37	7	13	41	1.73
30605--30651	23	2.0	23	87	0	67	25	23	12	38	1.90
30834--30880	23	2.0	23	92	8	78	25	14	17	42	1.87
30489--31085	229	2.6	227	91	2	962	38	13	20	27	1.90
33527--33558	16	2.0	16	93	0	55	53	3	18	25	1.59
35248--35299	21	2.5	21	80	0	59	36	9	15	38	1.80
38146--38198	22	2.4	22	84	12	65	47	1	15	35	1.56
44670--44758	28	3.1	28	79	6	90	38	2	26	32	1.69
44707--45095	87	4.4	87	77	7	317	35	2	24	38	1.68
44707--45124	29	14.3	29	77	9	232	34	2	24	38	1.67
44707--45124	59	7.1	58	75	6	301	34	2	24	38	1.67
47269--48130	149	5.8	148	76	4	464	15	31	17	34	1.92
47256--48218	99	9.7	99	76	4	758	15	31	18	34	1.92
47330--48218	50	17.9	50	73	10	562	15	31	18	34	1.92
48930--49019	43	2.1	43	81	10	103	14	20	15	50	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48894--49019	44	2.9	44	77	13	109	15	21	16	46	1.83
51026--51526	29	17.2	29	73	13	156	35	2	25	36	1.70
51049--51543	30	16.9	30	77	11	348	34	2	25	37	1.69
51049--51543	58	8.5	59	75	8	388	34	2	25	37	1.69
51063--51549	88	5.5	87	76	8	299	34	2	25	37	1.70
55453--55486	17	1.9	18	88	5	52	67	0	2	29	1.05
57379--57412	16	2.2	15	89	5	50	38	0	5	55	1.24
57475--57510	17	2.1	17	89	0	54	33	0	8	58	1.28
70756--70792	18	2.1	18	89	0	56	24	21	16	37	1.93
74432--74495	32	2.0	32	84	6	85	23	9	9	57	1.59
81071--81107	17	2.1	18	90	5	58	59	5	8	27	1.48
83969--84004	15	2.4	15	90	0	54	13	30	8	47	1.73
85597--85656	21	3.0	20	75	15	54	20	0	8	71	1.11
85920--85964	23	2.0	22	86	4	63	33	8	0	57	1.30
88882--88925	12	3.7	12	80	20	56	25	0	9	65	1.21
88882--88925	24	1.9	22	90	9	70	25	0	9	65	1.21
101548--101596	18	2.7	18	87	6	64	38	20	18	22	1.93
102114--102219	52	2.0	52	100	0	212	41	18	9	30	1.82
103395--103469	24	3.1	23	79	11	71	16	4	6	73	1.20
105264--105325	24	2.5	24	84	2	79	24	14	8	53	1.68
107232--107278	24	2.0	24	95	0	85	27	10	8	53	1.64
107232--107291	24	2.5	24	88	0	75	28	15	8	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111036--111325	41	7.1	41	83	0	303	33	16	25	24	1.96
111052--111357	82	3.7	82	84	0	371	32	16	25	24	1.96
112453--112512	29	2.1	29	81	12	70	35	0	6	58	1.24
112691--112724	17	1.9	18	88	5	52	50	8	2	38	1.49
113153--113307	41	3.7	41	75	4	132	37	15	25	21	1.93
113249--113349	42	2.4	42	86	5	141	31	15	28	23	1.96
113550--113594	17	2.6	17	89	0	63	24	35	6	33	1.82
116661--116702	14	3.0	14	92	0	66	45	11	2	40	1.54
116694--116722	8	3.6	8	100	0	58	34	0	0	65	0.93
122003--122031	14	2.1	14	93	6	51	34	0	10	55	1.34
122792--122892	43	2.4	43	86	1	132	23	17	25	32	1.97
123903--123945	4	10.5	4	80	14	52	20	2	0	76	0.89
123972--124003	3	10.7	3	93	0	55	37	28	0	34	1.57
124002--124049	12	4.0	12	75	0	51	33	10	0	56	1.34
124007--124056	21	2.3	22	82	3	66	30	8	0	62	1.24
125084--125257	85	2.0	85	87	0	249	40	12	27	20	1.87
125530--125581	21	2.5	21	83	0	68	51	15	7	25	1.69
130179--130665	23	21.3	23	84	3	561	45	13	5	34	1.67
132172--132200	7	4.3	7	91	8	51	0	27	0	72	0.85
133241--133304	24	2.7	24	80	9	76	26	17	25	31	1.97
142505--142871	124	3.0	124	95	0	644	35	20	20	23	1.96
176218--176290	21	3.5	21	92	7	114	27	13	26	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177372--177724	23	15.4	23	83	0	429	45	14	5	34	1.67
178022--178055	16	2.1	17	88	5	52	50	20	0	29	1.49
181191--181254	32	2.0	32	81	6	76	53	0	1	45	1.10
181200--181317	62	1.9	59	80	8	130	53	0	1	44	1.16
181438--181480	15	2.9	14	80	10	50	65	4	4	25	1.32
184326--184363	17	2.2	18	86	13	53	23	5	5	65	1.34
192254--192661	99	4.1	99	79	2	433	35	16	29	18	1.93
192270--192614	49	7.0	49	66	10	182	33	16	30	19	1.94
192280--192631	50	7.1	50	68	7	214	34	17	30	18	1.94
192295--192709	198	2.1	198	82	1	492	35	16	27	19	1.94
192295--192710	99	4.2	100	78	3	279	35	16	28	19	1.94
195233--195290	15	3.9	15	74	14	57	17	18	12	51	1.75
198612--198645	17	2.0	17	88	0	50	58	0	0	41	0.98
201744--202000	59	4.3	59	89	2	383	30	3	31	34	1.75
201739--202005	29	9.0	28	72	18	195	30	3	31	34	1.75
203058--203142	12	7.3	12	69	7	59	35	3	8	52	1.48
203076--203115	15	2.7	15	88	0	53	30	5	10	55	1.54
204478--204535	15	3.9	15	74	14	57	17	18	12	51	1.75
207857--207890	17	2.0	17	88	0	50	58	0	0	41	0.98
210989--211245	59	4.3	59	89	2	383	30	3	31	34	1.75
210984--211250	29	9.0	28	72	18	195	30	3	31	34	1.75
212303--212387	12	7.3	12	69	7	59	35	3	8	52	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212321--212360	15	2.7	15	88	0	53	30	5	10	55	1.54
213022--213053	13	2.5	13	94	0	55	21	6	15	56	1.62
213091--213154	6	10.5	6	71	15	51	59	1	1	37	1.16
213080--213154	17	4.2	17	80	17	80	58	2	2	36	1.26
213080--213154	37	2.1	35	87	9	107	58	2	2	36	1.26
213972--214117	37	3.6	37	66	19	103	24	23	17	34	1.95
213949--214122	86	2.0	86	96	0	321	23	24	17	35	1.95

Tables:   1

The End!