Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014275.1 Kokia drynarioides strain JFW-HI SEQ_129308, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8196
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33


Found at i:6810 original size:59 final size:59

Alignment explanation


    Indices: 6737--6877  Score: 187
    Period size: 60  Copynumber: 2.4  Consensus size: 59

       6727 TTTGATATAT

                               *    *           *           * *        
       6737 ATTTTTT-TAATTTGATACTTAAATATTTTTT-GACTCAATTTGGTACTTGAACTTGAC
          1 ATTTTTTCTAATTTGATACCTAAACATTTTTTGGACCCAATTTGGTACCTAAACTTGAC

                                                                      * 
       6794 ATTTTTTCCTAATTTGATACCTAAACATTTTTTGGACCCAATTTGGTACCTAAACTTGCC
          1 ATTTTTT-CTAATTTGATACCTAAACATTTTTTGGACCCAATTTGGTACCTAAACTTGAC

                            *       
       6854 ATGTTTTTCTAATTTGGTACCTAA
          1 AT-TTTTTCTAATTTGATACCTAA

       6878 GTTTTTTTTT


Statistics
Matches: 73,  Mismatches: 7, Indels: 5
        0.86            0.08        0.06

Matches are distributed among these distances:
  57    7  0.10
  59   22  0.30
  60   39  0.53
  61    5  0.07

ACGTcount: A:0.27, C:0.16, G:0.11, T:0.47


Consensus pattern (59 bp):   
ATTTTTTCTAATTTGATACCTAAACATTTTTTGGACCCAATTTGGTACCTAAACTTGAC

Found at i:7172 original size:31 final size:32

Alignment explanation


    Indices: 7128--7194  Score: 127
    Period size: 31  Copynumber: 2.1  Consensus size: 32

       7118 GTACTATCTT

                                            
       7128 AAAAAAATATCAAGTTTAAGTATCAAATTAAA
          1 AAAAAAATATCAAGTTTAAGTATCAAATTAAA

                                            
       7160 AAAAAAAT-TCAAGTTTAAGTATCAAATTAAA
          1 AAAAAAATATCAAGTTTAAGTATCAAATTAAA

                
       7191 AAAA
          1 AAAA

       7195 GTGTCGGTAC


Statistics
Matches: 35,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  31   27  0.77
  32    8  0.23

ACGTcount: A:0.61, C:0.06, G:0.06, T:0.27


Consensus pattern (32 bp):   
AAAAAAATATCAAGTTTAAGTATCAAATTAAA
Done.