Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014278.1 Kokia drynarioides strain JFW-HI SEQ_129311, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2399
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:1891 original size:44 final size:44

Alignment explanation


    Indices: 1841--1928  Score: 158
    Period size: 44  Copynumber: 2.0  Consensus size: 44

       1831 ATATCAAATC

                                                        
       1841 TTATCACTATTTCAGGACACGGGATAAGCGATACCGTAACACAA
          1 TTATCACTATTTCAGGACACGGGATAAGCGATACCGTAACACAA

                               *             *          
       1885 TTATCACTATTTCAGGACATGGGATAAGCGATATCGTAACACAA
          1 TTATCACTATTTCAGGACACGGGATAAGCGATACCGTAACACAA

       1929 GGACTAGAAT


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  44   42  1.00

ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25


Consensus pattern (44 bp):   
TTATCACTATTTCAGGACACGGGATAAGCGATACCGTAACACAA
Done.