Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014279.1 Kokia drynarioides strain JFW-HI SEQ_129312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6262
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:574 original size:24 final size:24

Alignment explanation


    Indices: 546--592  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        536 AGTTCAAATT

                    * *     *       
        546 TATAAATATTGTCTTAGTTCTCTC
          1 TATAAATACTATCTTAATTCTCTC

                                   
        570 TATAAATACTATCTTAATTCTCT
          1 TATAAATACTATCTTAATTCTCT

        593 ATCTTCCTAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.30, C:0.17, G:0.04, T:0.49


Consensus pattern (24 bp):   
TATAAATACTATCTTAATTCTCTC

Found at i:1394 original size:24 final size:24

Alignment explanation


    Indices: 1366--1412  Score: 67
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       1356 AGTTCAAATT

                    * *     *       
       1366 TATAAATATTGTCTTAGTTCTCTC
          1 TATAAATACTATCTTAATTCTCTC

                                   
       1390 TATAAATACTATCTTAATTCTCT
          1 TATAAATACTATCTTAATTCTCT

       1413 ATCTTCCTAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.30, C:0.17, G:0.04, T:0.49


Consensus pattern (24 bp):   
TATAAATACTATCTTAATTCTCTC

Found at i:5233 original size:18 final size:18

Alignment explanation


    Indices: 5189--5257  Score: 68
    Period size: 18  Copynumber: 3.8  Consensus size: 18

       5179 GTTGACCATT

                *       *     
       5189 GATCGCTCCTCTGCCCGA
          1 GATCCCTCCTCTCCCCGA

                 *             
       5207 GA-CTGCTCCTCTCCCCGA
          1 GATC-CCTCCTCTCCCCGA

                        *   * 
       5225 GATCCCTCCTCTACCCAA
          1 GATCCCTCCTCTCCCCGA

                      *    
       5243 GATCCCTCCTTTCCC
          1 GATCCCTCCTCTCCC

       5258 TGATGTCCCT


Statistics
Matches: 43,  Mismatches: 6, Indels: 4
        0.81            0.11        0.08

Matches are distributed among these distances:
  17    1  0.02
  18   41  0.95
  19    1  0.02

ACGTcount: A:0.13, C:0.49, G:0.13, T:0.25


Consensus pattern (18 bp):   
GATCCCTCCTCTCCCCGA
Done.