genome.fa.s14281.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014281.1 Kokia drynarioides strain JFW-HI SEQ_129314, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  206545

Tables:   1   

This is table  1  of  1  ( 107 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19467--19511	23	1.9	24	86	4	65	55	0	2	42	1.12
19653--19693	21	1.9	22	85	5	57	31	0	9	58	1.31
19849--19913	24	2.9	21	80	14	85	26	0	7	66	1.19
19990--20032	22	2.0	22	86	4	61	62	0	2	34	1.08
19979--20066	38	2.4	36	77	11	88	64	1	3	30	1.17
19990--20065	22	3.8	21	65	21	54	64	1	1	32	1.10
22852--22897	16	2.9	16	84	9	51	36	4	0	58	1.18
25382--25433	23	2.3	23	80	6	61	34	11	15	38	1.83
27436--27487	24	2.2	24	96	0	95	30	15	3	50	1.62
31130--31776	312	2.1	312	85	1	859	27	19	16	36	1.93
31130--31776	104	6.2	104	83	0	758	27	19	16	36	1.93
32599--32638	20	2.1	19	85	4	53	35	2	5	57	1.34
41823--41857	13	2.8	12	91	8	61	20	0	0	80	0.72
43360--43393	6	5.7	6	100	0	68	35	14	50	0	1.44
44054--44096	18	2.4	18	80	7	52	51	0	2	46	1.13
62166--62203	2	19.0	2	100	0	76	50	0	0	50	1.00
62282--62312	12	2.5	13	89	10	55	6	0	6	87	0.68
65988--66031	14	2.8	16	80	16	56	52	0	0	47	1.00
69570--69632	33	1.9	33	86	0	90	44	15	0	39	1.47
69712--69745	2	17.0	2	100	0	68	0	50	0	50	1.00
70062--70214	28	5.4	28	76	7	130	26	16	6	50	1.69
70062--70207	58	2.5	59	84	3	181	26	15	6	51	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71227--71252	6	4.3	6	100	0	52	34	15	0	50	1.45
71816--71883	35	2.0	35	88	2	102	36	0	17	45	1.49
72422--72490	33	2.1	32	83	2	84	43	14	2	39	1.60
72888--73020	28	4.7	28	78	8	135	21	19	11	48	1.80
72888--73013	29	4.5	28	83	5	123	21	19	11	47	1.81
72951--73015	27	2.4	27	92	2	103	24	20	9	46	1.79
86895--86969	20	3.7	20	79	15	73	32	5	13	49	1.64
91568--91615	23	2.1	23	92	0	78	31	20	12	35	1.90
91611--91655	23	2.0	23	86	8	65	20	13	13	53	1.72
93087--93174	45	2.0	45	84	8	117	38	18	3	39	1.67
94179--94208	3	9.7	3	92	7	51	70	0	0	30	0.88
94178--94216	9	4.1	10	90	9	64	69	0	0	30	0.89
97159--97215	6	9.5	6	88	0	78	45	0	31	22	1.53
100068--100113	24	1.9	23	86	8	65	54	4	4	36	1.40
104346--104548	104	2.0	104	95	0	370	40	13	16	29	1.87
105694--105734	21	1.9	21	85	5	55	4	2	21	70	1.18
105753--105818	15	4.5	15	74	14	66	7	7	16	68	1.37
105751--105866	43	2.7	44	84	9	150	9	5	17	68	1.36
105751--105839	12	7.8	12	72	9	62	7	5	16	69	1.32
109212--109242	7	4.4	7	100	0	62	74	0	0	25	0.82
116352--116376	13	1.9	13	100	0	50	48	16	4	32	1.64
117399--117477	40	2.0	40	84	2	104	41	18	20	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117411--117509	40	2.5	41	86	6	141	41	16	19	23	1.90
117531--117734	41	5.0	41	78	4	214	32	22	25	20	1.97
119560--119710	47	3.2	48	87	2	227	29	32	1	36	1.66
122485--122607	59	2.1	59	98	0	237	24	13	25	37	1.91
125433--125483	18	2.9	17	82	8	66	45	1	3	49	1.32
125465--125552	6	15.5	6	71	15	71	40	1	3	54	1.24
125451--125567	27	4.3	27	73	17	91	40	1	3	54	1.27
125467--125498	10	3.1	10	95	4	55	40	0	0	59	0.97
125477--125568	17	5.4	17	84	2	121	41	1	3	54	1.24
125466--125568	11	9.2	11	72	15	70	41	0	2	54	1.22
127330--127537	29	7.4	29	76	14	211	32	33	3	30	1.74
127322--127537	59	3.8	59	81	11	272	33	32	3	31	1.74
127456--127493	20	2.0	20	94	5	69	42	36	5	15	1.70
127425--127522	49	2.0	49	93	0	169	37	34	3	24	1.71
128909--128958	21	2.4	20	90	3	73	34	18	46	2	1.60
128909--128965	21	2.7	21	86	5	62	35	17	45	1	1.59
129173--129205	15	2.2	15	94	0	57	24	0	27	48	1.51
129272--129539	43	6.1	42	74	13	220	26	18	26	28	1.98
129365--129539	85	2.0	86	90	3	273	27	18	27	26	1.98
130146--130222	34	2.3	34	84	4	102	16	31	3	48	1.65
135114--135175	17	3.6	17	73	16	65	19	37	3	40	1.68
135118--135192	34	2.2	34	95	0	132	18	37	2	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135135--135193	17	3.5	16	70	25	50	18	37	1	42	1.61
144977--145038	29	2.1	30	82	11	74	45	0	1	53	1.10
147264--147289	7	3.7	7	100	0	52	0	11	0	88	0.52
147347--147412	29	2.2	29	78	7	71	27	12	7	53	1.65
147807--147840	17	1.9	18	94	5	61	64	0	0	35	0.94
149587--149624	10	3.8	10	96	0	67	36	0	0	63	0.95
149566--149618	18	2.9	18	75	10	54	41	0	3	54	1.18
149581--149635	29	1.9	28	85	10	76	34	1	1	61	1.17
150813--150941	63	2.1	62	80	4	143	32	6	17	44	1.73
154596--154639	22	2.0	21	83	12	54	65	4	2	27	1.23
156370--156550	96	1.9	96	86	4	258	37	14	18	29	1.91
156950--157199	29	8.5	29	75	6	200	35	3	25	36	1.73
156897--157085	59	3.2	58	82	6	186	36	3	25	33	1.74
156950--157199	59	4.2	58	80	11	217	35	3	25	36	1.73
158956--159005	6	8.7	6	76	8	50	58	4	0	38	1.17
158969--159005	17	2.2	17	95	0	65	62	2	0	35	1.10
158952--159007	11	5.5	11	68	23	50	60	3	0	35	1.14
159337--159919	193	2.9	199	85	5	716	20	22	19	36	1.95
171145--171329	96	1.9	96	82	6	232	35	12	19	32	1.89
171595--171909	60	5.3	58	80	10	298	33	1	27	37	1.68
171615--171934	29	10.8	29	81	8	324	33	1	27	37	1.66
173710--173793	6	14.7	6	77	14	88	54	2	1	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173695--173793	17	5.7	17	83	9	87	53	2	2	42	1.23
173711--173782	23	3.1	22	82	7	90	54	2	1	41	1.23
173706--173794	11	8.4	11	69	18	55	57	2	1	39	1.19
177011--177053	19	2.3	19	79	0	50	48	11	4	34	1.60
180579--180611	12	2.8	12	86	13	50	54	0	0	45	0.99
180578--180629	24	2.4	21	82	17	63	55	0	0	44	0.99
181530--181581	26	2.0	27	92	3	88	53	0	1	44	1.11
181528--181586	11	6.3	10	75	25	58	49	0	1	49	1.11
181521--181593	11	7.4	11	76	21	56	50	0	2	46	1.15
181529--181612	38	2.3	38	85	10	120	52	1	1	45	1.16
181521--181614	19	5.1	19	73	20	74	53	1	2	43	1.19
182413--182493	34	2.3	35	81	12	87	46	0	35	17	1.48
182549--182623	27	2.7	29	79	6	100	50	0	0	49	1.00
182570--182615	13	3.4	13	80	11	56	56	0	0	43	0.99
182573--182615	14	3.1	14	82	0	59	60	0	0	39	0.97
182549--182620	28	2.6	26	78	10	81	51	0	0	48	1.00
198322--198410	43	2.1	43	93	0	151	28	8	23	39	1.85
205323--205577	141	1.8	137	82	8	327	29	10	7	53	1.61
205483--205665	87	2.1	87	87	6	260	31	14	4	49	1.63

Tables:   1

The End!