genome.fa.s14285.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014285.1 Kokia drynarioides strain JFW-HI SEQ_129318, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  377859

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2935--3120	96	1.9	96	82	6	234	38	13	18	28	1.90
3348--3705	30	12.2	28	72	14	206	32	4	30	32	1.78
3342--3713	59	6.3	60	82	7	401	31	4	30	33	1.79
3343--3727	176	2.2	175	85	6	494	31	4	30	32	1.78
4762--4832	33	2.2	32	87	7	99	38	0	5	56	1.23
4857--4903	24	2.0	23	84	12	60	27	14	6	51	1.67
5492--5554	17	3.8	16	77	10	54	49	4	0	46	1.23
15150--15190	18	2.3	18	87	4	57	0	21	0	78	0.76
23108--23161	22	2.5	22	90	0	81	22	29	24	24	1.99
23937--24220	43	6.6	43	82	2	275	39	24	15	20	1.91
23987--24219	129	1.8	128	83	5	308	40	23	15	21	1.90
23909--24220	86	3.6	86	80	2	333	38	23	16	21	1.92
27935--27966	6	5.3	6	100	0	64	31	15	0	53	1.43
27963--27999	3	12.3	3	94	0	65	29	0	2	67	1.04
27935--27996	12	5.2	12	86	11	58	30	8	1	59	1.36
27939--27996	18	3.2	18	83	13	59	31	6	1	60	1.33
30127--30518	182	2.1	183	83	7	476	39	14	10	35	1.80
32962--33017	20	2.8	19	76	10	58	12	3	7	76	1.11
38315--38340	2	13.0	2	100	0	52	50	0	0	50	1.00
46091--46145	27	2.0	27	92	0	92	16	43	9	30	1.79
49670--49813	60	2.4	60	85	2	191	25	22	14	37	1.92
49806--50026	51	4.3	51	81	6	241	31	23	12	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57099--57290	51	3.8	51	90	1	278	30	22	13	33	1.92
59295--59471	88	2.0	88	94	2	311	27	16	21	35	1.94
61044--61309	138	1.9	137	88	2	399	24	16	8	50	1.73
62630--62681	25	2.1	25	100	0	104	46	15	11	26	1.80
85015--85045	16	1.9	16	93	0	53	54	0	9	35	1.33
88119--88162	17	2.6	17	88	0	61	29	4	18	47	1.68
88239--88272	16	2.1	17	88	5	52	26	0	35	38	1.57
89504--89536	14	2.3	15	94	5	59	75	0	6	18	1.00
120947--120985	17	2.3	17	86	8	53	38	5	5	51	1.46
122642--122967	29	11.2	29	75	9	256	35	22	2	38	1.68
122652--122967	59	5.4	58	77	10	245	36	22	2	38	1.68
134486--134812	39	8.4	39	73	6	241	24	27	19	28	1.99
134537--134812	117	2.4	116	75	10	281	25	27	20	27	1.99
134486--134812	78	4.2	76	82	6	318	24	27	19	28	1.99
134527--134902	156	2.4	153	77	7	350	24	28	19	27	1.98
134537--134853	78	4.1	78	79	7	279	25	27	19	28	1.99
134838--134907	36	1.9	36	88	0	104	22	35	18	22	1.95
135358--135410	18	3.0	18	83	2	63	37	3	3	54	1.36
137135--137404	30	9.2	30	74	11	188	38	23	2	35	1.69
137172--137404	59	4.0	58	72	14	158	37	24	3	35	1.71
137236--137428	29	6.6	30	74	8	93	36	25	3	34	1.72
137482--137543	30	2.1	29	80	11	65	19	8	3	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137496--137535	15	2.7	15	88	11	64	20	7	0	72	1.08
137667--137857	97	2.0	97	84	2	249	30	17	15	36	1.92
143896--143954	26	2.3	26	84	0	73	32	6	13	47	1.69
148640--148669	14	2.1	14	93	0	51	20	3	0	76	0.92
149265--149332	29	2.3	29	80	9	77	32	20	19	27	1.97
149340--149426	29	3.0	29	78	11	79	34	18	16	31	1.93
153494--153552	29	2.0	29	100	0	118	35	20	23	20	1.96
157099--157134	18	2.0	18	94	0	63	50	8	22	19	1.74
166307--166368	31	2.0	31	96	0	115	16	37	19	27	1.93
169568--169832	132	2.0	130	94	2	469	36	6	21	34	1.80
180106--180157	21	2.5	22	84	6	72	50	38	0	11	1.39
180106--180156	22	2.4	21	86	3	66	50	39	0	9	1.35
189347--189373	8	3.4	8	100	0	54	33	0	0	66	0.92
192547--192604	29	2.0	28	86	3	80	46	1	12	39	1.51
221069--221101	15	2.1	16	88	5	50	51	6	30	12	1.63
223053--223105	18	2.7	19	77	16	56	30	3	13	52	1.57
226780--226813	17	2.1	17	88	5	52	35	0	14	50	1.44
232003--232033	13	2.4	13	94	0	53	35	19	19	25	1.95
234291--234326	13	2.7	13	91	4	54	13	5	11	69	1.34
239618--239694	38	2.0	38	92	0	127	28	9	31	31	1.88
242336--242402	18	3.7	18	81	0	80	25	2	46	25	1.67
242558--242598	18	2.3	18	86	0	55	41	7	21	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245154--245212	24	2.5	24	85	0	82	49	10	13	27	1.74
247138--247200	24	2.6	24	87	0	90	50	9	14	25	1.72
247448--247500	22	2.4	22	74	3	61	39	7	11	41	1.69
254675--254707	11	3.0	11	100	0	66	54	9	18	18	1.69
260115--260147	6	5.5	6	86	13	50	0	12	3	84	0.72
263354--263569	110	2.0	110	97	0	405	24	12	20	43	1.86
267281--267321	18	2.2	19	83	12	50	34	2	4	58	1.32
270273--270347	22	3.4	21	87	3	78	32	30	22	14	1.94
270286--270352	22	3.0	22	91	0	98	34	31	19	14	1.92
272154--272192	5	7.4	5	88	11	60	79	0	2	17	0.84
272154--272192	17	2.4	17	91	8	64	79	0	2	17	0.84
278542--278573	6	5.2	6	92	7	55	84	0	0	15	0.63
278659--278693	17	2.1	16	89	5	52	77	0	5	17	0.96
280993--281043	25	2.0	27	84	7	70	35	1	1	60	1.19
280993--281043	24	2.0	27	81	11	63	35	1	1	60	1.19
281251--281280	14	2.1	14	93	0	51	43	20	6	30	1.77
285979--286066	36	2.4	36	86	0	113	21	13	22	42	1.88
286574--286766	50	3.8	49	79	7	208	38	12	11	36	1.80
286577--286783	101	2.1	99	85	5	274	39	13	10	36	1.79
290687--290730	12	3.7	12	84	0	52	77	2	18	2	0.98
306228--306359	47	2.7	48	82	3	158	29	15	24	30	1.96
306246--306359	50	2.4	47	83	4	138	28	16	24	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309943--309971	11	2.6	11	100	0	58	37	17	0	44	1.49
312496--312536	20	2.1	19	90	4	64	68	0	7	24	1.15
315428--315483	25	2.1	25	87	9	76	73	5	1	19	1.12
315427--315485	26	2.2	29	82	14	81	72	5	1	20	1.12
315527--315560	15	2.3	15	94	0	59	73	2	0	23	0.97
315527--315560	11	3.1	11	91	8	52	73	2	0	23	0.97
315661--315718	15	3.9	15	73	17	50	70	3	6	18	1.24
316635--317285	50	13.0	50	80	0	582	22	21	16	38	1.93
316627--317287	150	4.4	150	81	1	660	22	21	16	38	1.93
322362--322411	21	2.5	20	90	6	82	24	0	4	72	1.02
325977--326042	29	2.3	29	84	5	89	62	4	6	27	1.39
326515--326551	6	6.2	6	96	0	56	78	0	0	21	0.75
340177--340219	22	2.0	22	86	4	61	34	13	0	51	1.42
344510--344541	13	2.4	14	94	5	57	78	0	21	0	0.76
344510--344636	58	2.1	62	82	16	162	60	9	18	11	1.57
345898--346114	112	1.9	112	80	0	254	29	21	11	36	1.89
346498--347209	49	14.6	50	70	7	347	38	15	24	20	1.92
346549--346810	144	1.8	144	88	0	398	39	14	25	21	1.91
346498--347241	98	7.6	98	76	6	460	39	15	24	20	1.92
346791--347103	147	2.1	147	87	0	446	40	15	23	19	1.90
347560--347703	42	3.4	42	86	3	209	27	31	14	26	1.95
348719--348781	2	32.0	2	80	3	74	41	0	7	50	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348719--348795	8	10.0	8	86	6	106	37	0	11	50	1.39
365498--365557	29	2.1	29	90	0	93	41	15	21	21	1.89
367952--368003	20	2.4	21	75	12	52	36	5	15	42	1.71

Tables:   1

The End!