Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014290.1 Kokia drynarioides strain JFW-HI SEQ_129324, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7629
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:2931 original size:109 final size:108

Alignment explanation


    Indices: 2740--2956  Score: 407
    Period size: 109  Copynumber: 2.0  Consensus size: 108

       2730 TACCTGAATC

                                                                             
       2740 ACCTGTTAGGAAATGCCACCACGAGTTTCTCTGATTTTGTCATATCGAGAGAGATGATTGAAAAT
          1 ACCTGTTAGGAAATGCCACCACGAGTTTCTCTGATTTTGTCATATCGAGAGAGATGATTGAAAAT

                                                       
       2805 GAAATCAAGACTAGCAAGATTGAAACCGAAGAAAACACTAAAT
         66 GAAATCAAGACTAGCAAGATTGAAACCGAAGAAAACACTAAAT

                                                              *              
       2848 NACCTGTTAGGAAATGCCACCACGAGTTTCTCTGATTTTGTCATATCGAGGGAGATGATTGAAAA
          1 -ACCTGTTAGGAAATGCCACCACGAGTTTCTCTGATTTTGTCATATCGAGAGAGATGATTGAAAA

              *                                         
       2913 TGCAATCAAGACTAGCAAGATTGAAACCGAAGAAAACACTAAAT
         65 TGAAATCAAGACTAGCAAGATTGAAACCGAAGAAAACACTAAAT

       2957 GGCTTGCCTC


Statistics
Matches: 106,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 109  106  1.00

ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24


Consensus pattern (108 bp):   
ACCTGTTAGGAAATGCCACCACGAGTTTCTCTGATTTTGTCATATCGAGAGAGATGATTGAAAAT
GAAATCAAGACTAGCAAGATTGAAACCGAAGAAAACACTAAAT
Done.