Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01014294.1 Kokia drynarioides strain JFW-HI SEQ_129329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2117
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34


Found at i:1627 original size:17 final size:17

Alignment explanation


    Indices: 1586--1627  Score: 52
    Period size: 15  Copynumber: 2.6  Consensus size: 17

       1576 GATGATCTAC

                         * * 
       1586 ATGTTATAAAAAAGTTT
          1 ATGTTATAAAAAAATAT

                             
       1603 AT-TT-TAAAAAAATAT
          1 ATGTTATAAAAAAATAT

                      
       1618 ATGTTATAAA
          1 ATGTTATAAA

       1628 TGTGTTATAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 4
        0.78            0.07        0.15

Matches are distributed among these distances:
  15   11  0.52
  16    4  0.19
  17    6  0.29

ACGTcount: A:0.52, C:0.00, G:0.07, T:0.40


Consensus pattern (17 bp):   
ATGTTATAAAAAAATAT
Done.