genome.fa.s14295.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014295.1 Kokia drynarioides strain JFW-HI SEQ_129330, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86187

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4--47	17	2.5	18	85	7	63	54	2	0	43	1.12
137--283	34	4.1	34	64	10	78	23	20	22	34	1.97
84--356	108	2.5	107	83	3	341	24	19	21	34	1.96
3840--3892	22	2.4	23	75	15	58	39	0	1	58	1.09
7098--7144	19	2.5	19	79	6	60	55	4	0	40	1.19
10223--10288	33	2.0	33	82	11	82	33	6	24	36	1.80
14268--14322	26	2.1	26	89	0	83	29	20	21	29	1.98
14336--14550	81	2.7	81	87	1	299	32	28	15	23	1.96
14928--14965	18	2.1	19	85	5	51	36	10	10	42	1.74
16733--16835	43	2.4	43	87	4	147	31	24	8	35	1.86
19980--20015	16	2.2	16	95	0	63	58	8	5	27	1.50
25953--26047	49	1.9	49	84	0	127	42	9	18	29	1.82
26967--27002	17	2.1	17	94	0	63	25	13	19	41	1.88
33143--33173	9	3.4	9	95	0	53	19	38	0	41	1.51
36145--36207	30	2.0	31	85	14	85	46	1	3	49	1.27
36454--36493	20	2.0	21	85	5	55	45	7	5	42	1.54
40574--40615	13	2.9	14	80	13	50	52	0	2	45	1.13
40644--40700	15	3.5	15	71	17	51	50	3	0	45	1.18
42100--42177	6	13.5	6	68	12	56	42	3	2	51	1.34
42100--42188	17	5.2	17	78	11	92	42	3	3	50	1.35
43955--44262	30	10.4	29	82	6	334	35	29	2	32	1.70
43955--44351	59	6.7	60	80	8	390	35	28	2	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44336--44396	27	2.2	28	94	2	106	34	31	9	24	1.88
44336--44406	28	2.6	27	88	6	90	30	29	9	29	1.89
57993--58250	30	8.8	29	76	10	204	34	28	4	32	1.77
57981--58251	59	4.6	60	83	5	283	33	29	4	32	1.77
57981--58252	118	2.3	119	84	5	331	34	29	4	32	1.77
58001--58347	59	5.9	59	78	4	253	33	28	4	33	1.79
58324--58385	28	2.2	28	82	0	79	33	29	9	27	1.88
59331--59405	21	3.6	20	79	16	73	30	12	26	30	1.92
59747--59780	17	2.0	17	94	0	59	35	14	17	32	1.91
59764--59826	32	2.0	32	100	0	126	31	15	25	26	1.96
65565--65987	188	2.2	191	88	2	629	27	20	24	27	1.99
66688--66741	21	2.6	20	85	11	65	33	11	27	27	1.91
69420--69466	22	2.2	22	96	3	87	74	0	8	17	1.05
71852--71911	25	2.4	25	86	8	77	80	0	3	16	0.85
71846--71914	6	11.3	6	76	14	70	79	0	2	17	0.85
71846--71911	13	5.3	12	76	20	57	80	0	3	16	0.84
78225--78268	20	2.1	21	84	12	56	61	6	2	29	1.34
80260--80289	15	1.9	16	93	6	53	70	0	13	16	1.18
80234--80280	22	2.2	22	96	3	87	74	0	8	17	1.05
82235--82268	18	1.9	18	88	5	52	29	0	5	64	1.17
82607--82688	6	14.2	6	70	7	62	41	1	1	56	1.15
82607--82688	17	4.4	18	77	16	78	41	1	1	56	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82613--82670	23	2.5	23	88	2	89	37	0	1	60	1.07
83402--83439	3	12.0	3	89	10	58	65	0	0	34	0.93
84436--84812	29	12.8	29	78	9	334	34	28	2	34	1.72
84436--84817	59	6.5	57	82	8	369	34	28	2	33	1.72
84856--84919	29	2.2	29	88	5	94	34	28	9	28	1.88
84868--84930	30	2.1	30	85	5	83	30	26	9	33	1.88

Tables:   1

The End!