genome.fa.s14296.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014296.1 Kokia drynarioides strain JFW-HI SEQ_129331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110665

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250--289	21	1.9	21	85	10	55	72	0	10	17	1.11
10908--10965	32	1.9	30	82	10	73	27	1	6	63	1.29
10996--11051	28	1.9	28	85	7	76	48	5	7	39	1.54
18193--18244	17	3.1	17	80	5	61	28	5	0	65	1.16
18193--18341	36	4.2	34	70	22	94	29	4	2	64	1.23
28556--28742	96	1.9	97	80	6	218	37	13	18	30	1.89
29010--29350	58	5.9	58	80	5	316	34	4	26	34	1.76
29010--29350	116	2.9	115	81	8	363	34	4	26	34	1.76
29061--29361	29	10.3	29	74	14	228	35	4	27	33	1.77
30403--30441	19	2.1	19	85	0	51	43	0	0	56	0.99
31110--31196	17	5.1	17	80	0	93	56	5	1	36	1.31
32600--32660	11	5.2	11	75	21	61	68	0	31	0	0.89
32600--32654	14	3.9	14	82	2	65	67	0	32	0	0.91
32612--32661	14	3.7	13	80	15	57	68	0	32	0	0.90
35883--35938	23	2.4	23	76	5	60	17	21	17	42	1.89
36121--36171	23	2.3	22	79	3	57	45	9	17	27	1.80
43598--43654	24	2.4	25	85	14	84	8	36	7	47	1.62
51661--51692	11	2.9	11	100	0	64	18	0	18	62	1.33
51844--51911	6	11.5	6	79	6	59	47	0	20	32	1.51
52643--52724	42	2.0	42	85	4	112	40	17	13	29	1.87
72053--72334	140	2.0	140	98	0	546	48	9	19	23	1.77
84494--84565	37	1.9	37	100	0	144	26	2	6	63	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88906--88944	15	2.4	17	83	12	55	66	0	0	33	0.92
90846--90885	17	2.5	17	81	18	50	40	2	0	57	1.12
103637--103665	4	7.2	4	100	0	58	51	24	0	24	1.48
104254--104278	3	8.3	3	100	0	50	68	0	32	0	0.90
108014--108053	19	2.1	20	86	9	57	67	12	0	20	1.22
108193--108301	53	2.0	55	89	3	168	37	4	6	51	1.48

Tables:   1

The End!