genome.fa.s14298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014298.1 Kokia drynarioides strain JFW-HI SEQ_129333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107721

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18808--18842	17	2.0	18	88	5	54	57	2	5	34	1.37
20045--20097	27	2.0	27	88	0	79	41	7	16	33	1.77
34645--34739	44	2.2	44	88	0	145	25	16	21	36	1.94
36737--36776	17	2.4	17	86	0	53	42	2	10	45	1.51
37860--37922	31	2.1	31	93	3	110	42	23	7	25	1.81
57358--57603	128	2.0	124	88	6	363	26	21	19	32	1.97
66741--66827	29	3.0	29	79	5	95	34	12	21	31	1.91
66724--66839	29	4.0	29	77	4	90	37	13	19	28	1.90
66926--67030	40	2.6	40	83	0	129	24	19	20	36	1.95
67439--67529	41	2.2	41	78	0	101	35	38	9	16	1.82
67461--67675	94	2.3	94	77	7	231	30	37	13	18	1.90
67572--67706	53	2.6	52	80	3	162	27	34	16	21	1.94
67678--67780	43	2.3	46	81	6	122	27	38	13	20	1.90
68790--68924	43	3.2	41	82	8	164	28	37	15	19	1.92
81190--81214	7	3.6	7	100	0	50	76	0	0	24	0.80
90698--90742	7	6.4	7	100	0	90	40	13	0	46	1.43
91122--91191	32	2.2	33	81	2	79	57	2	2	37	1.29
91528--91606	26	3.1	24	73	10	68	56	3	17	21	1.56
96102--96162	33	2.0	31	81	15	74	36	0	0	63	0.94
97384--97438	18	3.1	18	78	21	71	25	0	0	74	0.82
99176--99216	19	2.1	20	86	13	59	43	0	4	51	1.23
102490--102927	29	14.9	29	73	18	327	30	4	30	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102490--102927	59	7.4	59	87	3	578	30	4	30	34	1.77
102485--102918	117	3.7	117	86	4	586	30	4	30	34	1.77
104618--104698	6	14.0	6	78	17	82	49	2	2	45	1.28
104631--104697	11	5.9	11	76	11	64	50	1	1	46	1.19
104618--104705	17	5.1	17	86	6	106	50	2	2	45	1.27
105429--105796	201	1.8	200	85	2	524	21	23	18	36	1.95

Tables:   1

The End!